-
2
-
-
61849108691
-
Genome sequence of the pathogenic intestinal spirochete brachyspira hyodysenteriae reveals adaptations to its lifestyle in the porcine large intestine
-
Bellgard MI,Wanchanthuek P, La T, Ryan K,Moolhuijzen P, Albertyn Z, Shaban B,Motro Y, Dunn DS, Schibeci D, Hunter A, Barrero R, Phillips ND, Hampson DJ. 2009. Genome sequence of the pathogenic intestinal spirochete brachyspira hyodysenteriae reveals adaptations to its lifestyle in the porcine large intestine. PLoS ONE 4:e4641.
-
(2009)
PLoS ONE
, vol.4
-
-
Bellgard, M.I.1
Wanchanthuek, P.2
La, T.3
Ryan, K.4
Moolhuijzen, P.5
Albertyn, Z.6
Shaban, B.7
Motro, Y.8
Dunn, D.S.9
Schibeci, D.10
Hunter, A.11
Barrero, R.12
Phillips, N.D.13
Hampson, D.J.14
-
3
-
-
84895773411
-
Geneious version 5 Biomatters
-
Biomatters. 2010. Geneious version 5.6.2. Available from http://www.geneious.com/.
-
(2010)
, vol.6
, Issue.2
-
-
-
4
-
-
0027333330
-
Hundreds of ankyrin-like repeats in functionally diverse proteins: mobile modules that cross phyla horizontally?
-
Bork P. 1993. Hundreds of ankyrin-like repeats in functionally diverse proteins: mobile modules that cross phyla horizontally? Proteins 17:363-374.
-
(1993)
Proteins
, vol.17
, pp. 363-374
-
-
Bork, P.1
-
5
-
-
0023280623
-
Similarity between cell-cycle genes of budding yeast and fission yeast and the Notch gene of Drosophila
-
Breeden L, Nasmyth K. 1987. Similarity between cell-cycle genes of budding yeast and fission yeast and the Notch gene of Drosophila. Nature 329:651-654.
-
(1987)
Nature
, vol.329
, pp. 651-654
-
-
Breeden, L.1
Nasmyth, K.2
-
6
-
-
84864453108
-
more models, new heuristics and parallel computing
-
Darriba D, Taboada GL, Doallo R, Posada D. 2012. jModelTest 2: more models, new heuristics and parallel computing. Nature Methods 9:772.
-
(2012)
Nature Methods
, vol.2
, pp. 772
-
-
Darriba, D.1
Taboada, G.L.2
Doallo, R.3
Posada, D.4
-
7
-
-
50849115482
-
Legionella eukaryotic-like type IV substrates interfere with organelle trafficking
-
de Felipe KS, Glover RT, Charpentier X, Anderson OR, Reyes M, Pericone CD, Shuman HA. Legionella eukaryotic-like type IV substrates interfere with organelle trafficking. PLoS Pathogens 4:e1000117.
-
PLoS Pathogens 4:e1000117
-
-
de Felipe, K.S.1
Glover, R.T.2
Charpentier, X.3
Anderson, O.R.4
Reyes, M.5
Pericone, C.D.6
Shuman, H.A.7
-
8
-
-
0025045446
-
Anaerobic aryl reductive dehalogenation of halobenzoates by cell extracts of "Desulfomonile tiedjei
-
Deweerd KA, Suflita JM. 1990. Anaerobic aryl reductive dehalogenation of halobenzoates by cell extracts of "Desulfomonile tiedjei". Applied and Environmental Microbiology 56:2999-3005.
-
(1990)
Applied and Environmental Microbiology
, vol.56
, pp. 2999-3005
-
-
Deweerd, K.A.1
Suflita, J.M.2
-
9
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Reseach 32:1792-1797.
-
(2004)
Nucleic Acids Reseach
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
10
-
-
84873334559
-
Proteomic analysis of an unculturable bacterial endosymbiont (Blochmannia) reveals high abundance of chaperonins and biosynthetic enzymes
-
Fan Y, Thompson JW, Dubois LG,Moseley MA,Wernegreen JJ. 2013. Proteomic analysis of an unculturable bacterial endosymbiont (Blochmannia) reveals high abundance of chaperonins and biosynthetic enzymes. Journal of Proteome Research 12:704-718.
-
(2013)
Journal of Proteome Research
, vol.12
, pp. 704-718
-
-
Fan, Y.1
Thompson, J.W.2
Dubois, L.G.3
Moseley, M.A.4
Wernegreen, J.J.5
-
11
-
-
84862908910
-
Cj1386 is an ankyrin-containing protein involved in heme trafficking to catalase in Campylobacter jejuni
-
Flint A, Sun YQ, Stintzi A. 2012. Cj1386 is an ankyrin-containing protein involved in heme trafficking to catalase in Campylobacter jejuni. Journal of Bacteriology 194:334-345.
-
(2012)
Journal of Bacteriology
, vol.194
, pp. 334-345
-
-
Flint, A.1
Sun, Y.Q.2
Stintzi, A.3
-
12
-
-
67650886021
-
Epigenetic silencing of host cell defense genes enhances intracellular survival of the rickettsial pathogen Anaplasma phagocytophilum
-
Garcia-Garcia JC, Barat NC, Trembley SJ, Dumler JS. 2009. Epigenetic silencing of host cell defense genes enhances intracellular survival of the rickettsial pathogen Anaplasma phagocytophilum. PLoS Pathogens 5:e1000488.
-
(2009)
PLoS Pathogens
, vol.5
-
-
Garcia-Garcia, J.C.1
Barat, N.C.2
Trembley, S.J.3
Dumler, J.S.4
-
13
-
-
0030575866
-
Structure of the p53 tumor suppressor bound to the ankyrin and SH3 domains of 53BP2
-
Gorina S, Pavletich NP. 1996. Structure of the p53 tumor suppressor bound to the ankyrin and SH3 domains of 53BP2. Science 274:1001-1005.
-
(1996)
Science
, vol.274
, pp. 1001-1005
-
-
Gorina, S.1
Pavletich, N.P.2
-
14
-
-
0035798406
-
Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure
-
Gough J, Karplus K, Hughey R, Chothia C. 2001. Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure. Journal of Molecular Biology 313:903-919.
-
(2001)
Journal of Molecular Biology
, vol.313
, pp. 903-919
-
-
Gough, J.1
Karplus, K.2
Hughey, R.3
Chothia, C.4
-
15
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S, Gascuel O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology 52:696-704.
-
(2003)
Systematic Biology
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
17
-
-
0022376704
-
Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
-
Hasegawa M, Kishino H, Yano T. 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. Journal of Molecular Evolution 22:160-174.
-
(1985)
Journal of Molecular Evolution
, vol.22
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.3
-
20
-
-
16044362074
-
Notch3 mutations in CADASIL, a hereditary adult-onset condition causing stroke and dementia
-
Joutel A, Corpechot C, Ducros A, Vahedi K, Chabriat H,Mouton P, Alamowitch S, Domenga V, Cecillion M,Marechal E,Maciazek J, Vayssiere C, Cruaud C, Cabanis EA, Ruchoux MM, Weissenbach J, Bach JF, Bousser MG, Tournier-Lasserve E. 1996. Notch3 mutations in CADASIL, a hereditary adult-onset condition causing stroke and dementia. Nature 383:707-710.
-
(1996)
Nature
, vol.383
, pp. 707-710
-
-
Joutel, A.1
Corpechot, C.2
Ducros, A.3
Vahedi, K.4
Chabriat, H.5
Mouton, P.6
Alamowitch, S.7
Domenga, V.8
Cecillion, M.9
Marechal, E.10
Maciazek, J.11
Vayssiere, C.12
Cruaud, C.13
Cabanis, E.A.14
Ruchoux, M.M.15
Weissenbach, J.16
Bach, J.F.17
Bousser, M.G.18
Tournier-Lasserve, E.19
-
21
-
-
34147154867
-
Anaplasma phagocytophilum AnkA is tyrosine-phosphorylated at EPIYA motifs and recruits SHP-1 during early infection
-
JW IJdo, Carlson AC, Kennedy EL. 2007. Anaplasma phagocytophilum AnkA is tyrosine-phosphorylated at EPIYA motifs and recruits SHP-1 during early infection. Cellular Microbiology 9:1284-1296.
-
(2007)
Cellular Microbiology
, vol.9
, pp. 1284-1296
-
-
Ijdo, J.W.1
Carlson, A.C.2
Kennedy, E.L.3
-
22
-
-
84862221167
-
recent updates to the protein domain annotation resource
-
Letunic I, Doerks T, Bork P. 2012. SMART 7: recent updates to the protein domain annotation resource. Nucleic Acids Research 40(D1):D302-D305.
-
(2012)
Nucleic Acids Research
, vol.7
, Issue.D1
-
-
Letunic, I.1
Doerks, T.2
Bork, P.3
-
23
-
-
33845934490
-
Ankyrin repeat: a unique motif mediating protein-protein interactions
-
Li J,Mahajan A, Tsai MD. 2006. Ankyrin repeat: a unique motif mediating protein-protein interactions. Biochemistry 45:15168-15178.
-
(2006)
Biochemistry
, vol.45
, pp. 15168-15178
-
-
Li, J.1
Mahajan, A.2
Tsai, M.D.3
-
25
-
-
84865662983
-
Comparative genomics of Brachyspira pilosicoli strains: genome rearrangements, reductions and correlation of genetic compliment with phenotypic diversity
-
Mappley LJ, Black ML, AbuOun M, Darby AC,Woodward MJ, Parkhill J, Turner AK, Bellgard MI, La T, Phillips ND, La Ragione RM, Hampson DJ. 2012. Comparative genomics of Brachyspira pilosicoli strains: genome rearrangements, reductions and correlation of genetic compliment with phenotypic diversity. BMC Genomics 13:454.
-
(2012)
BMC Genomics
, vol.13
, pp. 454
-
-
Mappley, L.J.1
Black, M.L.2
Abuoun, M.3
Darby, A.C.4
Woodward, M.J.5
Parkhill, J.6
Turner, A.K.7
Bellgard, M.I.8
La, T.9
Phillips, N.D.10
La Ragione, R.M.11
Hampson, D.J.12
-
29
-
-
84895752029
-
-
NCBI., Genome, resource., Available at
-
NCBI Genome resource. Available at: http://www.ncbi.nlm.nih.gov/genome.
-
-
-
-
30
-
-
84895755057
-
-
NCBI Protein resource. Available at: http://www.ncbi.nlm.nih.gov/protein.
-
-
-
-
31
-
-
79151472877
-
-
Newton IL, Bordenstein SR. 2011. Correlations between bacterial ecology and mobile DNA. Current Microbiology 62:198-208
-
(2011)
, vol.62
, pp. 198-208
-
-
Newton, I.L.1
Bordenstein, S.R.2
-
32
-
-
46249111623
-
-
Pan X, Luhrmann A, Satoh A, Laskowski-Arce MA, Roy CR. 2008. Ankyrin repeat proteins comprise a diverse family of bacterial type IV effectors. Science 320:1651-1654
-
(2008)
Science
, vol.320
, pp. 1651-1654
-
-
Pan, X.1
Luhrmann, A.2
Satoh, A.3
Laskowski-Arce, M.A.4
Roy, C.R.5
-
33
-
-
84868089864
-
Comparative genomics suggests an independent origin of cytoplasmic incompatibility in Cardinium hertigii
-
Penz T, Schmitz-Esser S, Kelly SE, Cass BN,Muller A,Woyke T,Malfatti SA, Hunter MS, Horn M. 2012. Comparative genomics suggests an independent origin of cytoplasmic incompatibility in Cardinium hertigii. PLoS Genetics 8:e1003012
-
(2012)
PLoS Genetics
, vol.8
-
-
Penz, T.1
Schmitz-Esser, S.2
Kelly, S.E.3
Cass, B.N.4
Muller, A.5
Woyke, T.6
Malfatti, S.A.7
Hunter, M.S.8
Horn, M.9
-
34
-
-
79958008118
-
-
Poliakov A, Russell CW, Ponnala L, Hoops HJ, Sun Q, Douglas AE, van Wijk KJ. 2011. Large-scale label-free quantitative proteomics of the pea aphid-Buchnera symbiosis. Molecular & Cellular Proteomics 10:M110 007039.
-
(2011)
Large-scale label-free quantitative proteomics of the pea aphid-Buchnera symbiosis. Molecular & Cellular Proteomics 10:M110
, pp. 007039
-
-
Poliakov, A.1
Russell, C.W.2
Ponnala, L.3
Hoops, H.J.4
Sun, Q.5
Douglas, A.E.6
Van Wijk, K.J.7
-
35
-
-
49149083960
-
DRD2 and ANKK1 genotype in alcohol-dependent patients with psychopathic traits: association and interaction study
-
Ponce G, Hoenicka J, Jimenez-Arriero MA, Rodriguez-Jimenez R, Aragues M,Martin-Sune N, Huertas E, Palomo T. 2008. DRD2 and ANKK1 genotype in alcohol-dependent patients with psychopathic traits: association and interaction study. The British Journal of Psychiatry 193:121-125.
-
(2008)
The British Journal of Psychiatry
, vol.193
, pp. 121-125
-
-
Ponce, G.1
Hoenicka, J.2
Jimenez-Arriero, M.A.3
Rodriguez-Jimenez, R.4
Aragues, M.5
Martin-Sune, N.6
Huertas, E.7
Palomo, T.8
-
39
-
-
0032568655
-
SMART, a simple modular architecture research tool: identification of signaling domains
-
Schultz J, Milpetz F, Bork P, Ponting CP. 1998. SMART, a simple modular architecture research tool: identification of signaling domains. Proceedings of National Academy of Sciences of United States of America 95:5857-5864.
-
(1998)
Proceedings of National Academy of Sciences of United States of America
, vol.95
, pp. 5857-5864
-
-
Schultz, J.1
Milpetz, F.2
Bork, P.3
Ponting, C.P.4
-
40
-
-
0032792551
-
The ankyrin repeat: a diversity of interactions on a common structural framework
-
Sedgwick SG, Smerdon SJ. 1999. The ankyrin repeat: a diversity of interactions on a common structural framework. Trends in Biochemical Sciences 24:311-316.
-
(1999)
Trends in Biochemical Sciences
, vol.24
, pp. 311-316
-
-
Sedgwick, S.G.1
Smerdon, S.J.2
-
42
-
-
84873488127
-
-
Siozios S, Ioannidis P, Klasson L, Andersson SG, Braig HR, Bourtzis K. 2013. The diversity and evolution ofWolbachia ankyrin repeat domain genes. PLoS ONE 8:e55390.
-
(2013)
The diversity and evolution ofWolbachia ankyrin repeat domain genes. PLoS ONE
, vol.8
-
-
Siozios, S.1
Ioannidis, P.2
Klasson, L.3
Andersson, S.G.4
Braig, H.R.5
Bourtzis, K.6
-
43
-
-
0038610618
-
The complete genome sequence of the carcinogenic bacterium Helicobacter hepaticus
-
Suerbaum S, Josenhans C, Sterzenbach T, Drescher B, Brandt P, Bell M, Droge M, Fartmann B, Fischer HP, Ge Z, Horster A, Holland R, Klein K, Konig J,Macko L,Mendz GL, Nyakatura G, Schauer DB, Shen Z,Weber J, Frosch M, Fox JG. 2003. The complete genome sequence of the carcinogenic bacterium Helicobacter hepaticus. Proceedings of National Academy of Sciences of United States of America 100:7901-7906.
-
(2003)
Proceedings of National Academy of Sciences of United States of America
, vol.100
, pp. 7901-7906
-
-
Suerbaum, S.1
Josenhans, C.2
Sterzenbach, T.3
Drescher, B.4
Brandt, P.5
Bell, M.6
Droge, M.7
Fartmann, B.8
Fischer, H.P.9
Ge, Z.10
Horster, A.11
Holland, R.12
Klein, K.13
Konig, J.14
Macko, L.15
Mendz, G.L.16
Nyakatura, G.17
Schauer, D.B.18
Shen, Z.19
Weber, J.20
Frosch, M.21
Fox, J.G.22
more..
-
44
-
-
84895762636
-
-
SUPERFAMILY., HMM., library and genome assignments, server., Available at
-
SUPERFAMILY. HMM library and genome assignments server. Available at http://supfam.org/SUPERFAMILY/.
-
-
-
-
46
-
-
0037228879
-
Sequential unfolding of ankyrin repeats in tumor suppressor p16
-
Tang KS, Fersht AR, Itzhaki LS. 2003. Sequential unfolding of ankyrin repeats in tumor suppressor p16. Structure 11:67-73.
-
(2003)
Structure
, vol.11
, pp. 67-73
-
-
Tang, K.S.1
Fersht, A.R.2
Itzhaki, L.S.3
-
48
-
-
38049063892
-
Folding and unfolding mechanism of highly stable full-consensus ankyrin repeat proteins
-
Wetzel SK, Settanni G, Kenig M, Binz HK, Pluckthun A. 2008. Folding and unfolding mechanism of highly stable full-consensus ankyrin repeat proteins. Journal of Molecular Biology 376:241-257.
-
(2008)
Journal of Molecular Biology
, vol.376
, pp. 241-257
-
-
Wetzel, S.K.1
Settanni, G.2
Kenig, M.3
Binz, H.K.4
Pluckthun, A.5
-
49
-
-
58149203228
-
UPERFAMILY-sophisticated comparative genomics, data mining, visualization and phylogeny
-
Wilson D, Pethica R, Zhou Y, Talbot C, Vogel C,Madera M, Chothia C, Gough J. 2009. UPERFAMILY-sophisticated comparative genomics, data mining, visualization and phylogeny. Nucleic Acids Research 37:D380-386.
-
(2009)
Nucleic Acids Research
, vol.37
-
-
Wilson, D.1
Pethica, R.2
Zhou, Y.3
Talbot, C.4
Vogel, C.5
Madera, M.6
Chothia, C.7
Gough, J.8
-
50
-
-
70349417835
-
Nuclear translocated Ehrlichia chaffeensis ankyrin protein interacts with a specific adenine-rich motif of host promoter and intronic Alu elements
-
Zhu B, Nethery KA, Kuriakose JA,Wakeel A, Zhang X,McBride JW. 2009. Nuclear translocated Ehrlichia chaffeensis ankyrin protein interacts with a specific adenine-rich motif of host promoter and intronic Alu elements. Infection and Immunity 77:4243-4255.
-
(2009)
Infection and Immunity
, vol.77
, pp. 4243-4255
-
-
Zhu, B.1
Nethery, K.A.2
Kuriakose, J.A.3
Wakeel, A.4
Zhang, X.5
McBride, J.W.6
|