-
1
-
-
67650895858
-
Global Prediction of Tissue-Specific Gene Expression and Context-Dependent Gene Networks in Caenorhabditis elegans
-
Chikina MD, Huttenhower C, Murphy CT, Troyanskaya OG, (2009) Global Prediction of Tissue-Specific Gene Expression and Context-Dependent Gene Networks in Caenorhabditis elegans. PLoS computational biology 5: e1000417.
-
(2009)
PLoS Computational Biology
, vol.5
-
-
Chikina, M.D.1
Huttenhower, C.2
Murphy, C.T.3
Troyanskaya, O.G.4
-
2
-
-
38549180634
-
Nematode genome evolution
-
Coghlan A, (2005) Nematode genome evolution. WormBook pp. 1-15.
-
(2005)
WormBook
, pp. 1-15
-
-
Coghlan, A.1
-
3
-
-
0034878923
-
Biodiversity in helminths and nematodes as a field of study: an overview
-
Hugot J-P, Baujard P, Morand S, (2001) Biodiversity in helminths and nematodes as a field of study: an overview. Nematology pp. 199-208.
-
(2001)
Nematology
, pp. 199-208
-
-
Hugot, J.-P.1
Baujard, P.2
Morand, S.3
-
4
-
-
0242658695
-
Parasitic nematode interactions with mammals and plants
-
Jasmer DP, Goverse A, Smant G, (2003) Parasitic nematode interactions with mammals and plants. Annu Rev Phytopathol 41: 245-270.
-
(2003)
Annu Rev Phytopathol
, vol.41
, pp. 245-270
-
-
Jasmer, D.P.1
Goverse, A.2
Smant, G.3
-
5
-
-
33744486308
-
Incorporating a Rapid-Impact Package for Neglected Tropical Diseases with Programs for HIV/AIDS, Tuberculosis, and Malaria
-
Hotez PJ, Molyneux DH, Fenwick A, Ottesen E, Ehrlich Sachs S, et al. (2006) Incorporating a Rapid-Impact Package for Neglected Tropical Diseases with Programs for HIV/AIDS, Tuberculosis, and Malaria. PLoS Med 3: e102.
-
(2006)
PLoS Med
, vol.3
-
-
Hotez, P.J.1
Molyneux, D.H.2
Fenwick, A.3
Ottesen, E.4
Ehrlich Sachs, S.5
-
6
-
-
84861207340
-
WormBase 2012: more genomes, more data, new website
-
Yook K, Harris TW, Bieri T, Cabunoc A, Chan J, et al. (2012) WormBase 2012: more genomes, more data, new website. Nucleic acids research 40: D735-D741.
-
(2012)
Nucleic Acids Research
, vol.40
-
-
Yook, K.1
Harris, T.W.2
Bieri, T.3
Cabunoc, A.4
Chan, J.5
-
7
-
-
84862223905
-
Nematode.net update 2011: addition of data sets and tools featuring next-generation sequencing data
-
Martin J, Abubucker S, Heizer E, Taylor C, Mitreva M, (2012) Nematode.net update 2011: addition of data sets and tools featuring next-generation sequencing data. Nucleic acids research 40: D720-D728.
-
(2012)
Nucleic Acids Research
, vol.40
-
-
Martin, J.1
Abubucker, S.2
Heizer, E.3
Taylor, C.4
Mitreva, M.5
-
8
-
-
78751516220
-
A global analysis of C. elegans trans-splicing
-
Allen MA, Hillier LW, Waterston RH, Blumenthal T, (2011) A global analysis of C. elegans trans-splicing. Genome research 21: 255-264.
-
(2011)
Genome Research
, vol.21
, pp. 255-264
-
-
Allen, M.A.1
Hillier, L.W.2
Waterston, R.H.3
Blumenthal, T.4
-
9
-
-
84860800529
-
Transcription profiling reveals stage- and function-dependent expression patterns in the filarial nematode Brugia malayi
-
Li B-W, Wang Z, Rush A, Mitreva M, Weil G, (2012) Transcription profiling reveals stage- and function-dependent expression patterns in the filarial nematode Brugia malayi. BMC Genomics 13: 184.
-
(2012)
BMC Genomics
, vol.13
, pp. 184
-
-
Li, B.-W.1
Wang, Z.2
Rush, A.3
Mitreva, M.4
Weil, G.5
-
10
-
-
10744220169
-
Comparative genomics of gene expression in the parasitic and free-living nematodes Strongyloides stercoralis and Caenorhabditis elegans
-
Mitreva M, McCarter JP, Martin J, Dante M, Wylie T, et al. (2004) Comparative genomics of gene expression in the parasitic and free-living nematodes Strongyloides stercoralis and Caenorhabditis elegans. Genome Res 14: 209-220.
-
(2004)
Genome Res
, vol.14
, pp. 209-220
-
-
Mitreva, M.1
McCarter, J.P.2
Martin, J.3
Dante, M.4
Wylie, T.5
-
11
-
-
84869078220
-
RNAseq Analysis of the Parasitic Nematode Strongyloides stercoralis Reveals Divergent Regulation of Canonical Dauer Pathways
-
Stoltzfus JD, Minot S, Berriman M, Nolan TJ, Lok JB, (2012) RNAseq Analysis of the Parasitic Nematode Strongyloides stercoralis Reveals Divergent Regulation of Canonical Dauer Pathways. PLoS Negl Trop Dis 6: e1854.
-
(2012)
PLoS Negl Trop Dis
, vol.6
-
-
Stoltzfus, J.D.1
Minot, S.2
Berriman, M.3
Nolan, T.J.4
Lok, J.B.5
-
12
-
-
0035935627
-
Caenorhabditis elegans: how good a model for veterinary parasites?
-
Geary TG, Thompson DP, (2001) Caenorhabditis elegans: how good a model for veterinary parasites? Vet Parasitol 101: 371-386.
-
(2001)
Vet Parasitol
, vol.101
, pp. 371-386
-
-
Geary, T.G.1
Thompson, D.P.2
-
13
-
-
81855167105
-
Ascaris suum draft genome
-
Jex AR, Liu S, Li B, Young ND, Hall RS, et al. (2011) Ascaris suum draft genome. Nature 479: 529-533.
-
(2011)
Nature
, vol.479
, pp. 529-533
-
-
Jex, A.R.1
Liu, S.2
Li, B.3
Young, N.D.4
Hall, R.S.5
-
15
-
-
56149121546
-
Intestinal transcriptomes of nematodes: comparison of the parasites Ascaris suum and Haemonchus contortus with the free-living Caenorhabditis elegans
-
Yin Y, Martin J, Abubucker S, Scott AL, McCarter JP, et al. (2008) Intestinal transcriptomes of nematodes: comparison of the parasites Ascaris suum and Haemonchus contortus with the free-living Caenorhabditis elegans. PLoS Negl Trop Dis 2: e269.
-
(2008)
PLoS Negl Trop Dis
, vol.2
-
-
Yin, Y.1
Martin, J.2
Abubucker, S.3
Scott, A.L.4
McCarter, J.P.5
-
16
-
-
85015490106
-
Gene expression analysis distinguishes tissue-specific and gender-related functions among adult Ascaris suum tissues
-
Wang Z, Gao X, Martin J, Yin Y, Abubucker S, et al. (2013) Gene expression analysis distinguishes tissue-specific and gender-related functions among adult Ascaris suum tissues. Mol Genet Genomics 10: 10.
-
(2013)
Mol Genet Genomics
, vol.10
, pp. 10
-
-
Wang, Z.1
Gao, X.2
Martin, J.3
Yin, Y.4
Abubucker, S.5
-
17
-
-
33745617710
-
A fast and symmetric DUST implementation to mask low-complexity DNA sequences
-
Morgulis A, Gertz EM, Schaffer AA, Agarwala R, (2006) A fast and symmetric DUST implementation to mask low-complexity DNA sequences. Journal of computational biology: a journal of computational molecular cell biology 13: 1028-1040.
-
(2006)
Journal of Computational Biology: A Journal of Computational Molecular Cell Biology
, vol.13
, pp. 1028-1040
-
-
Morgulis, A.1
Gertz, E.M.2
Schaffer, A.A.3
Agarwala, R.4
-
18
-
-
13444304389
-
GenBank
-
Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL, (2005) GenBank. Nucleic acids research 33: D34-38.
-
(2005)
Nucleic Acids Research
, vol.33
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Wheeler, D.L.5
-
19
-
-
65449136284
-
TopHat: discovering splice junctions with RNA-Seq
-
Trapnell C, Pachter L, Salzberg SL, (2009) TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25: 1105-1111.
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
20
-
-
63849342015
-
Massively parallel sequencing of the polyadenylated transcriptome of C. elegans
-
Hillier LW, Reinke V, Green P, Hirst M, Marra MA, et al. (2009) Massively parallel sequencing of the polyadenylated transcriptome of C. elegans. Genome research 19: 657-666.
-
(2009)
Genome Research
, vol.19
, pp. 657-666
-
-
Hillier, L.W.1
Reinke, V.2
Green, P.3
Hirst, M.4
Marra, M.A.5
-
21
-
-
84866634299
-
Finding consistent patterns: A nonparametric approach for identifying differential expression in RNA-Seq data
-
Li J, Tibshirani R, (2011) Finding consistent patterns: A nonparametric approach for identifying differential expression in RNA-Seq data. Stat Methods Med Res 28: 28.
-
(2011)
Stat Methods Med Res
, vol.28
, pp. 28
-
-
Li, J.1
Tibshirani, R.2
-
22
-
-
84882692468
-
Large Scale Comparison of Gene Expression Levels by Microarrays and RNAseq Using TCGA Data
-
Guo Y, Sheng Q, Li J, Ye F, Samuels DC, et al. (2013) Large Scale Comparison of Gene Expression Levels by Microarrays and RNAseq Using TCGA Data. PLoS One 8: e71462.
-
(2013)
PLoS One
, vol.8
-
-
Guo, Y.1
Sheng, Q.2
Li, J.3
Ye, F.4
Samuels, D.C.5
-
23
-
-
84887156607
-
Parallel comparison of Illumina RNA-Seq and Affymetrix microarray platforms on transcriptomic profiles generated from 5-aza-deoxy-cytidine treated HT-29 colon cancer cells and simulated datasets
-
Xu X, Zhang Y, Williams J, Antoniou E, McCombie WR, et al. (2013) Parallel comparison of Illumina RNA-Seq and Affymetrix microarray platforms on transcriptomic profiles generated from 5-aza-deoxy-cytidine treated HT-29 colon cancer cells and simulated datasets. BMC bioinformatics 14: 1471-2105.
-
(2013)
BMC Bioinformatics
, vol.14
, pp. 1471-2105
-
-
Xu, X.1
Zhang, Y.2
Williams, J.3
Antoniou, E.4
McCombie, W.R.5
-
24
-
-
84874677498
-
A comparison of methods for differential expression analysis of RNA-seq data
-
Soneson C, Delorenzi M, (2013) A comparison of methods for differential expression analysis of RNA-seq data. BMC bioinformatics 14: 91.
-
(2013)
BMC Bioinformatics
, vol.14
, pp. 91
-
-
Soneson, C.1
Delorenzi, M.2
-
25
-
-
84883420810
-
In-Depth Characterization of microRNA Transcriptome in Melanoma
-
Kozubek J, Ma Z, Fleming E, Duggan T, Wu R, et al. (2013) In-Depth Characterization of microRNA Transcriptome in Melanoma. PLoS One 8: e72699.
-
(2013)
PLoS One
, vol.8
-
-
Kozubek, J.1
Ma, Z.2
Fleming, E.3
Duggan, T.4
Wu, R.5
-
26
-
-
84880748598
-
A mammalian pseudogene lncRNA at the interface of inflammation and anti-inflammatory therapeutics
-
Rapicavoli NA, Qu K, Zhang J, Mikhail M, Laberge RM, et al. (2013) A mammalian pseudogene lncRNA at the interface of inflammation and anti-inflammatory therapeutics. Elife 2: e00762.
-
(2013)
Elife
, vol.2
-
-
Rapicavoli, N.A.1
Qu, K.2
Zhang, J.3
Mikhail, M.4
Laberge, R.M.5
-
27
-
-
84872801486
-
Identification and functional annotation of genome-wide ER-regulated genes in breast cancer based on ChIP-Seq data
-
568950
-
Ding M, Wang H, Chen J, Shen B, Xu Z, (2012) Identification and functional annotation of genome-wide ER-regulated genes in breast cancer based on ChIP-Seq data. Comput Math Methods Med 568950: 31.
-
(2012)
Comput Math Methods Med
, pp. 31
-
-
Ding, M.1
Wang, H.2
Chen, J.3
Shen, B.4
Xu, Z.5
-
28
-
-
77955102632
-
Transcriptome and targetome analysis in MIR155 expressing cells using RNA-seq
-
Xu G, Fewell C, Taylor C, Deng N, Hedges D, et al. (2010) Transcriptome and targetome analysis in MIR155 expressing cells using RNA-seq. Rna 16: 1610-1622.
-
(2010)
Rna
, vol.16
, pp. 1610-1622
-
-
Xu, G.1
Fewell, C.2
Taylor, C.3
Deng, N.4
Hedges, D.5
-
29
-
-
0034800374
-
InterProScan-an integration platform for the signature-recognition methods in InterPro
-
Zdobnov EM, Apweiler R, (2001) InterProScan-an integration platform for the signature-recognition methods in InterPro. Bioinformatics 17: 847-848.
-
(2001)
Bioinformatics
, vol.17
, pp. 847-848
-
-
Zdobnov, E.M.1
Apweiler, R.2
-
30
-
-
77954296666
-
A new bioinformatics analysis tools framework at EMBL-EBI
-
Goujon M, McWilliam H, Li W, Valentin F, Squizzato S, et al. (2010) A new bioinformatics analysis tools framework at EMBL-EBI. Nucleic Acids Res 38: W695-699.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Goujon, M.1
McWilliam, H.2
Li, W.3
Valentin, F.4
Squizzato, S.5
-
31
-
-
0034069495
-
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, et al. (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 25: 25-29.
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
-
32
-
-
84858983547
-
KEGG for integration and interpretation of large-scale molecular data sets
-
Kanehisa M, Goto S, Sato Y, Furumichi M, Tanabe M, (2012) KEGG for integration and interpretation of large-scale molecular data sets. Nucleic acids research 40: D109-114.
-
(2012)
Nucleic Acids Research
, vol.40
-
-
Kanehisa, M.1
Goto, S.2
Sato, Y.3
Furumichi, M.4
Tanabe, M.5
-
33
-
-
34547588704
-
KAAS: an automatic genome annotation and pathway reconstruction server
-
Moriya Y, Itoh M, Okuda S, Yoshizawa AC, Kanehisa M, (2007) KAAS: an automatic genome annotation and pathway reconstruction server. Nucleic acids research 35: W182-185.
-
(2007)
Nucleic Acids Research
, vol.35
-
-
Moriya, Y.1
Itoh, M.2
Okuda, S.3
Yoshizawa, A.C.4
Kanehisa, M.5
-
34
-
-
2142657817
-
A combined transmembrane topology and signal peptide prediction method
-
Kall L, Krogh A, Sonnhammer EL, (2004) A combined transmembrane topology and signal peptide prediction method. Journal of molecular biology 338: 1027-1036.
-
(2004)
Journal of Molecular Biology
, vol.338
, pp. 1027-1036
-
-
Kall, L.1
Krogh, A.2
Sonnhammer, E.L.3
-
35
-
-
3042692704
-
Feature-based prediction of non-classical and leaderless protein secretion
-
Bendtsen JD, Jensen LJ, Blom N, Von Heijne G, Brunak S, (2004) Feature-based prediction of non-classical and leaderless protein secretion. Protein engineering, design & selection: PEDS 17: 349-356.
-
(2004)
Protein Engineering, Design & Selection: PEDS
, vol.17
, pp. 349-356
-
-
Bendtsen, J.D.1
Jensen, L.J.2
Blom, N.3
Von Heijne, G.4
Brunak, S.5
-
36
-
-
33847173733
-
FUNC: a package for detecting significant associations between gene sets and ontological annotations
-
Prufer K, Muetzel B, Do H, Weiss G, Khaitovich P, et al. (2007) FUNC: a package for detecting significant associations between gene sets and ontological annotations. BMC bioinformatics 8: 41.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 41
-
-
Prufer, K.1
Muetzel, B.2
Do, H.3
Weiss, G.4
Khaitovich, P.5
-
37
-
-
84861207340
-
WormBase 2012: more genomes, more data, new website
-
Yook K, Harris TW, Bieri T, Cabunoc A, Chan J, et al. (2012) WormBase 2012: more genomes, more data, new website. Nucleic acids research 40: 8.
-
(2012)
Nucleic Acids Research
, vol.40
, pp. 8
-
-
Yook, K.1
Harris, T.W.2
Bieri, T.3
Cabunoc, A.4
Chan, J.5
-
38
-
-
79958090979
-
DREME: motif discovery in transcription factor ChIP-seq data
-
Bailey TL, (2011) DREME: motif discovery in transcription factor ChIP-seq data. Bioinformatics 27: 1653-1659.
-
(2011)
Bioinformatics
, vol.27
, pp. 1653-1659
-
-
Bailey, T.L.1
-
39
-
-
79953300078
-
FIMO: scanning for occurrences of a given motif
-
Grant CE, Bailey TL, Noble WS, (2011) FIMO: scanning for occurrences of a given motif. Bioinformatics 27: 1017-1018.
-
(2011)
Bioinformatics
, vol.27
, pp. 1017-1018
-
-
Grant, C.E.1
Bailey, T.L.2
Noble, W.S.3
-
41
-
-
38549096565
-
JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update
-
Bryne JC, Valen E, Tang MH, Marstrand T, Winther O, et al. (2008) JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update. Nucleic acids research 36: 15.
-
(2008)
Nucleic Acids Research
, vol.36
, pp. 15
-
-
Bryne, J.C.1
Valen, E.2
Tang, M.H.3
Marstrand, T.4
Winther, O.5
-
42
-
-
58149200952
-
UniPROBE: an online database of protein binding microarray data on protein-DNA interactions
-
Newburger DE, Bulyk ML, (2009) UniPROBE: an online database of protein binding microarray data on protein-DNA interactions. Nucleic acids research 37: 8.
-
(2009)
Nucleic Acids Research
, vol.37
, pp. 8
-
-
Newburger, D.E.1
Bulyk, M.L.2
-
43
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ, (1990) Basic local alignment search tool. Journal of molecular biology 215: 403-410.
-
(1990)
Journal of Molecular Biology
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
44
-
-
0014828088
-
Abbreviations and Symbols for Nucleic Acids, Polynucleotides and their Constituents
-
IUPAC-IUB
-
IUPAC-IUB (1970) Abbreviations and Symbols for Nucleic Acids, Polynucleotides and their Constituents. European Journal of Biochemistry 15: 203-208.
-
(1970)
European Journal of Biochemistry
, vol.15
, pp. 203-208
-
-
-
45
-
-
79551587720
-
Cytoscape 2.8: new features for data integration and network visualization
-
Smoot ME, Ono K, Ruscheinski J, Wang PL, Ideker T, (2011) Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics 27: 431-432.
-
(2011)
Bioinformatics
, vol.27
, pp. 431-432
-
-
Smoot, M.E.1
Ono, K.2
Ruscheinski, J.3
Wang, P.L.4
Ideker, T.5
-
46
-
-
71749094192
-
Arabidopsis gene co-expression network and its functional modules
-
Mao L, Van Hemert J, Dash S, Dickerson J, (2009) Arabidopsis gene co-expression network and its functional modules. BMC bioinformatics 10: 346.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 346
-
-
Mao, L.1
Van Hemert, J.2
Dash, S.3
Dickerson, J.4
-
47
-
-
58049126584
-
A nomenclature for ligand-gated ion channels
-
Collingridge GL, Olsen RW, Peters J, Spedding M, (2009) A nomenclature for ligand-gated ion channels. Neuropharmacology 56: 2-5.
-
(2009)
Neuropharmacology
, vol.56
, pp. 2-5
-
-
Collingridge, G.L.1
Olsen, R.W.2
Peters, J.3
Spedding, M.4
-
48
-
-
2942511454
-
VKCDB: voltage-gated potassium channel database
-
Li B, Gallin WJ, (2004) VKCDB: voltage-gated potassium channel database. BMC bioinformatics 5: 3.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 3
-
-
Li, B.1
Gallin, W.J.2
-
49
-
-
67649235126
-
Serum arylesterase activity is negatively correlated with inflammatory markers in patients with acute coronary syndromes
-
Senturk T, Sarandol E, Gullulu S, Erdinc S, Ozdabakoglu O, et al. (2009) Serum arylesterase activity is negatively correlated with inflammatory markers in patients with acute coronary syndromes. Saudi Med J 30: 334-339.
-
(2009)
Saudi Med J
, vol.30
, pp. 334-339
-
-
Senturk, T.1
Sarandol, E.2
Gullulu, S.3
Erdinc, S.4
Ozdabakoglu, O.5
-
50
-
-
45349083023
-
Decreased serum paraoxonase-1 activity during intestinal nematode (Nippostrongylus brasiliensis) infection in rats
-
Farid AS, Nakahara K, Murakami N, Hayashi T, Horii Y, (2008) Decreased serum paraoxonase-1 activity during intestinal nematode (Nippostrongylus brasiliensis) infection in rats. The American journal of tropical medicine and hygiene 78: 770-776.
-
(2008)
The American Journal of Tropical Medicine and Hygiene
, vol.78
, pp. 770-776
-
-
Farid, A.S.1
Nakahara, K.2
Murakami, N.3
Hayashi, T.4
Horii, Y.5
-
51
-
-
46249130101
-
Protective Effect of an Extract from Ascaris suum in Experimental Arthritis Models
-
Rocha FAC, Leite AKRM, Pompeu MML, Cunha TM, Verri WA, et al. (2008) Protective Effect of an Extract from Ascaris suum in Experimental Arthritis Models. Infection and Immunity 76: 2736-2745.
-
(2008)
Infection and Immunity
, vol.76
, pp. 2736-2745
-
-
Rocha, F.A.C.1
Leite, A.K.R.M.2
Pompeu, M.M.L.3
Cunha, T.M.4
Verri, W.A.5
-
52
-
-
84895766736
-
The C. elegans pharynx: A model for organogenesis
-
editor. WormBook
-
Mango SE (2007) The C. elegans pharynx: a model for organogenesis. In: Community TCeR, editor. WormBook.
-
(2007)
Community TCeR
-
-
Mango, S.E.1
-
53
-
-
0033387285
-
Actions of Nematode FMRFamide-related Peptides on the Pharyngeal Muscle of the Parasitic Nematode, Ascaris suum
-
Brownlee DJA, Walker RJ, (1999) Actions of Nematode FMRFamide-related Peptides on the Pharyngeal Muscle of the Parasitic Nematode, Ascaris suum. Annals of the New York Academy of Sciences 897: 228-238.
-
(1999)
Annals of the New York Academy of Sciences
, vol.897
, pp. 228-238
-
-
Brownlee, D.J.A.1
Walker, R.J.2
-
54
-
-
0037312504
-
Hookworm aspartic protease, Na-APR-2, cleaves human hemoglobin and serum proteins in a host-specific fashion
-
Williamson AL, Brindley PJ, Abbenante G, Datu BJ, Prociv P, et al. (2003) Hookworm aspartic protease, Na-APR-2, cleaves human hemoglobin and serum proteins in a host-specific fashion. J Infect Dis 187: 484-494.
-
(2003)
J Infect Dis
, vol.187
, pp. 484-494
-
-
Williamson, A.L.1
Brindley, P.J.2
Abbenante, G.3
Datu, B.J.4
Prociv, P.5
-
55
-
-
33846057724
-
NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
-
Pruitt KD, Tatusova T, Maglott DR, (2007) NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic acids research 35: 27.
-
(2007)
Nucleic Acids Research
, vol.35
, pp. 27
-
-
Pruitt, K.D.1
Tatusova, T.2
Maglott, D.R.3
-
56
-
-
56149121546
-
Intestinal transcriptomes of nematodes: comparison of the parasites Ascaris suum and Haemonchus contortus with the free-living Caenorhabditis elegans
-
Yin Y, Martin J, Abubucker S, Scott AL, McCarter JP, et al. (2008) Intestinal transcriptomes of nematodes: comparison of the parasites Ascaris suum and Haemonchus contortus with the free-living Caenorhabditis elegans. PLoS Negl Trop Dis 2: 0000269.
-
(2008)
PLoS Negl Trop Dis
, vol.2
, pp. 0000269
-
-
Yin, Y.1
Martin, J.2
Abubucker, S.3
Scott, A.L.4
McCarter, J.P.5
-
57
-
-
3342976387
-
MSP domain proteins show enhanced expression in male germ line cells
-
Tarr DEK, Scott AL, (2004) MSP domain proteins show enhanced expression in male germ line cells. Molecular and Biochemical Parasitology 137: 87-98.
-
(2004)
Molecular and Biochemical Parasitology
, vol.137
, pp. 87-98
-
-
Tarr, D.E.K.1
Scott, A.L.2
-
58
-
-
84869090330
-
Silencing of Germline-Expressed Genes by DNA Elimination in Somatic Cells
-
Wang J, Mitreva M, Berriman M, Thorne A, Magrini V, et al. (2012) Silencing of Germline-Expressed Genes by DNA Elimination in Somatic Cells. Developmental Cell 23: 1072-1080.
-
(2012)
Developmental Cell
, vol.23
, pp. 1072-1080
-
-
Wang, J.1
Mitreva, M.2
Berriman, M.3
Thorne, A.4
Magrini, V.5
-
59
-
-
84863115230
-
Nematode sperm maturation triggered by protease involves sperm-secreted serine protease inhibitor (Serpin)
-
Zhao Y, Sun W, Zhang P, Chi H, Zhang MJ, et al. (2012) Nematode sperm maturation triggered by protease involves sperm-secreted serine protease inhibitor (Serpin). Proc Natl Acad Sci U S A 109: 1542-1547.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 1542-1547
-
-
Zhao, Y.1
Sun, W.2
Zhang, P.3
Chi, H.4
Zhang, M.J.5
-
60
-
-
0037137443
-
Gene Clustering Based on RNAi Phenotypes of Ovary-Enriched Genes in C. elegans
-
Piano F, Schetter AJ, Morton DG, Gunsalus KC, Reinke V, et al. (2002) Gene Clustering Based on RNAi Phenotypes of Ovary-Enriched Genes in C. elegans. Current Biology 12: 1959-1964.
-
(2002)
Current Biology
, vol.12
, pp. 1959-1964
-
-
Piano, F.1
Schetter, A.J.2
Morton, D.G.3
Gunsalus, K.C.4
Reinke, V.5
-
61
-
-
0033639116
-
A Global Profile of Germline Gene Expression in C. elegans
-
Reinke V, Smith HE, Nance J, Wang J, Van Doren C, et al. (2000) A Global Profile of Germline Gene Expression in C. elegans. Molecular Cell 6: 605-616.
-
(2000)
Molecular Cell
, vol.6
, pp. 605-616
-
-
Reinke, V.1
Smith, H.E.2
Nance, J.3
Wang, J.4
Van Doren, C.5
-
62
-
-
20244369068
-
New genes with roles in the C. elegans embryo revealed using RNAi of ovary-enriched ORFeome clones
-
Fernandez AG, Gunsalus KC, Huang J, Chuang L-S, Ying N, et al. (2005) New genes with roles in the C. elegans embryo revealed using RNAi of ovary-enriched ORFeome clones. Genome research 15: 250-259.
-
(2005)
Genome Research
, vol.15
, pp. 250-259
-
-
Fernandez, A.G.1
Gunsalus, K.C.2
Huang, J.3
Chuang, L.-S.4
Ying, N.5
-
63
-
-
34249982937
-
Role of phosphatidylinositol-4-phosphate 5′ kinase (ppk-1) in ovulation of Caenorhabditis elegans
-
Xu X, Guo H, Wycuff DL, Lee M, (2007) Role of phosphatidylinositol-4-phosphate 5′ kinase (ppk-1) in ovulation of Caenorhabditis elegans. Exp Cell Res 313: 2465-2475.
-
(2007)
Exp Cell Res
, vol.313
, pp. 2465-2475
-
-
Xu, X.1
Guo, H.2
Wycuff, D.L.3
Lee, M.4
-
64
-
-
84863115230
-
Nematode sperm maturation triggered by protease involves sperm-secreted serine protease inhibitor (Serpin)
-
Zhao Y, Sun W, Zhang P, Chi H, Zhang M-J, et al. (2012) Nematode sperm maturation triggered by protease involves sperm-secreted serine protease inhibitor (Serpin). Proceedings of the National Academy of Sciences.
-
(2012)
Proceedings of the National Academy of Sciences
-
-
Zhao, Y.1
Sun, W.2
Zhang, P.3
Chi, H.4
Zhang, M.-J.5
-
65
-
-
81755163132
-
For Male Caenorhabditis elegans, Sperm Activation Is a "Just-in-Time" Event
-
Shakes DC, (2011) For Male Caenorhabditis elegans, Sperm Activation Is a "Just-in-Time" Event. PLoS Genet 7: e1002392.
-
(2011)
PLoS Genet
, vol.7
-
-
Shakes, D.C.1
-
66
-
-
0034599633
-
Acting like actin. The dynamics of the nematode major sperm protein (msp) cytoskeleton indicate a push-pull mechanism for amoeboid cell motility
-
Roberts TM, Stewart M, (2000) Acting like actin. The dynamics of the nematode major sperm protein (msp) cytoskeleton indicate a push-pull mechanism for amoeboid cell motility. J Cell Biol 149: 7-12.
-
(2000)
J Cell Biol
, vol.149
, pp. 7-12
-
-
Roberts, T.M.1
Stewart, M.2
-
67
-
-
0032838754
-
Characterization of human semen α-l-fucosidases
-
Alhadeff JA, Khunsook S, Choowongkomon K, Baney T, Heredia V, et al. (1999) Characterization of human semen α-l-fucosidases. Molecular Human Reproduction 5: 809-815.
-
(1999)
Molecular Human Reproduction
, vol.5
, pp. 809-815
-
-
Alhadeff, J.A.1
Khunsook, S.2
Choowongkomon, K.3
Baney, T.4
Heredia, V.5
-
69
-
-
0026438406
-
Morphology of the uterus of Ascaris lumbricoides in the region where fertilization and formation of egg-shell occur
-
Lysek H, Ondrus J, (1992) Morphology of the uterus of Ascaris lumbricoides in the region where fertilization and formation of egg-shell occur. Folia Parasitol 39: 41-50.
-
(1992)
Folia Parasitol
, vol.39
, pp. 41-50
-
-
Lysek, H.1
Ondrus, J.2
-
70
-
-
0029855583
-
Morphogenesis of the C. elegans hermaphrodite uterus
-
Newman AP, White JG, Sternberg PW, (1996) Morphogenesis of the C. elegans hermaphrodite uterus. Development 122: 3617-3626.
-
(1996)
Development
, vol.122
, pp. 3617-3626
-
-
Newman, A.P.1
White, J.G.2
Sternberg, P.W.3
-
71
-
-
0033545660
-
Reciprocal EGF signaling back to the uterus from the induced C. elegans vulva coordinates morphogenesis of epithelia
-
Chang C, Newman AP, Sternberg PW, (1999) Reciprocal EGF signaling back to the uterus from the induced C. elegans vulva coordinates morphogenesis of epithelia. Current biology: CB 9: 237-246.
-
(1999)
Current Biology: CB
, vol.9
, pp. 237-246
-
-
Chang, C.1
Newman, A.P.2
Sternberg, P.W.3
-
72
-
-
23144458473
-
InterProScan: protein domains identifier
-
Quevillon E, Silventoinen V, Pillai S, Harte N, Mulder N, et al. (2005) InterProScan: protein domains identifier. Nucleic acids research 33: W116-120.
-
(2005)
Nucleic Acids Research
, vol.33
-
-
Quevillon, E.1
Silventoinen, V.2
Pillai, S.3
Harte, N.4
Mulder, N.5
-
73
-
-
0033747384
-
Mab-3 is a direct tra-1 target gene regulating diverse aspects of C. elegans male sexual development and behavior
-
Yi W, Ross JM, Zarkower D, (2000) Mab-3 is a direct tra-1 target gene regulating diverse aspects of C. elegans male sexual development and behavior. Development 127: 4469-4480.
-
(2000)
Development
, vol.127
, pp. 4469-4480
-
-
Yi, W.1
Ross, J.M.2
Zarkower, D.3
-
74
-
-
60549094760
-
ELT-2 is the predominant transcription factor controlling differentiation and function of the C. elegans intestine, from embryo to adult
-
McGhee JD, Fukushige T, Krause MW, Minnema SE, Goszczynski B, et al. (2009) ELT-2 is the predominant transcription factor controlling differentiation and function of the C. elegans intestine, from embryo to adult. Dev Biol 327: 551-565.
-
(2009)
Dev Biol
, vol.327
, pp. 551-565
-
-
McGhee, J.D.1
Fukushige, T.2
Krause, M.W.3
Minnema, S.E.4
Goszczynski, B.5
-
75
-
-
75549085494
-
Gene expression atlas at the European bioinformatics institute
-
Kapushesky M, Emam I, Holloway E, Kurnosov P, Zorin A, et al. (2010) Gene expression atlas at the European bioinformatics institute. Nucleic acids research 38: 11.
-
(2010)
Nucleic Acids Research
, vol.38
, pp. 11
-
-
Kapushesky, M.1
Emam, I.2
Holloway, E.3
Kurnosov, P.4
Zorin, A.5
-
76
-
-
0028106198
-
Targeted mutations in the Caenorhabditis elegans POU homeo box gene ceh-18 cause defects in oocyte cell cycle arrest, gonad migration, and epidermal differentiation
-
Greenstein D, Hird S, Plasterk RH, Andachi Y, Kohara Y, et al. (1994) Targeted mutations in the Caenorhabditis elegans POU homeo box gene ceh-18 cause defects in oocyte cell cycle arrest, gonad migration, and epidermal differentiation. Genes & Development 8: 1935-1948.
-
(1994)
Genes & Development
, vol.8
, pp. 1935-1948
-
-
Greenstein, D.1
Hird, S.2
Plasterk, R.H.3
Andachi, Y.4
Kohara, Y.5
-
77
-
-
33748486517
-
AceView: a comprehensive cDNA-supported gene and transcripts annotation
-
Thierry-Mieg D, Thierry-Mieg J, (2006) AceView: a comprehensive cDNA-supported gene and transcripts annotation. Genome Biol 7: 1-14.
-
(2006)
Genome Biol
, vol.7
, pp. 1-14
-
-
Thierry-Mieg, D.1
Thierry-Mieg, J.2
-
78
-
-
79953758068
-
A Bow-Tie Genetic Architecture for Morphogenesis Suggested by a Genome-Wide RNAi Screen in Caenorhabditis elegans
-
Nelson MD, Zhou E, Kiontke K, Fradin H, Maldonado G, et al. (2011) A Bow-Tie Genetic Architecture for Morphogenesis Suggested by a Genome-Wide RNAi Screen in Caenorhabditis elegans. PLoS Genet 7: e1002010.
-
(2011)
PLoS Genet
, vol.7
-
-
Nelson, M.D.1
Zhou, E.2
Kiontke, K.3
Fradin, H.4
Maldonado, G.5
-
79
-
-
84858602406
-
InterPro in 2011: new developments in the family and domain prediction database
-
Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, et al. (2012) InterPro in 2011: new developments in the family and domain prediction database. Nucleic acids research 40: 16.
-
(2012)
Nucleic Acids Research
, vol.40
, pp. 16
-
-
Hunter, S.1
Jones, P.2
Mitchell, A.3
Apweiler, R.4
Attwood, T.K.5
-
80
-
-
74349123142
-
Antagonistic Smad transcription factors control the dauer/non-dauer switch in C. elegans
-
Park D, Estevez A, Riddle DL, (2010) Antagonistic Smad transcription factors control the dauer/non-dauer switch in C. elegans. Development 137: 477-485.
-
(2010)
Development
, vol.137
, pp. 477-485
-
-
Park, D.1
Estevez, A.2
Riddle, D.L.3
-
81
-
-
0035931097
-
Further defining housekeeping, or "maintenance," genes Focus on A compendium of gene expression in normal human tissues
-
Butte AJ, Dzau VJ, Glueck SB, (2001) Further defining housekeeping, or "maintenance," genes Focus on "A compendium of gene expression in normal human tissues". Physiological Genomics 7: 95-96.
-
(2001)
Physiological Genomics
, vol.7
, pp. 95-96
-
-
Butte, A.J.1
Dzau, V.J.2
Glueck, S.B.3
-
82
-
-
84866065824
-
Weighted Frequent Gene Co-expression Network Mining to Identify Genes Involved in Genome Stability
-
Zhang J, Lu K, Xiang Y, Islam M, Kotian S, et al. (2012) Weighted Frequent Gene Co-expression Network Mining to Identify Genes Involved in Genome Stability. PLoS computational biology 8: e1002656.
-
(2012)
PLoS Computational Biology
, vol.8
-
-
Zhang, J.1
Lu, K.2
Xiang, Y.3
Islam, M.4
Kotian, S.5
-
83
-
-
67650865944
-
Multi-tissue coexpression networks reveal unexpected subnetworks associated with disease
-
Dobrin R, Zhu J, Molony C, Argman C, Parrish M, et al. (2009) Multi-tissue coexpression networks reveal unexpected subnetworks associated with disease. Genome Biology 10: R55.
-
(2009)
Genome Biology
, vol.10
-
-
Dobrin, R.1
Zhu, J.2
Molony, C.3
Argman, C.4
Parrish, M.5
-
84
-
-
79960657553
-
Gene Coexpression Network Analysis as a Source of Functional Annotation for Rice Genes
-
Childs KL, Davidson RM, Buell CR, (2011) Gene Coexpression Network Analysis as a Source of Functional Annotation for Rice Genes. PLoS One 6: e22196.
-
(2011)
PLoS One
, vol.6
-
-
Childs, K.L.1
Davidson, R.M.2
Buell, C.R.3
-
86
-
-
66349115612
-
Haemonchus contortus Acetylcholine Receptors of the DEG-3 Subfamily and Their Role in Sensitivity to Monepantel
-
Rufener L, Mäser P, Roditi I, Kaminsky R, (2009) Haemonchus contortus Acetylcholine Receptors of the DEG-3 Subfamily and Their Role in Sensitivity to Monepantel. PLoS Pathog 5: e1000380.
-
(2009)
PLoS Pathog
, vol.5
-
-
Rufener, L.1
Mäser, P.2
Roditi, I.3
Kaminsky, R.4
-
87
-
-
40749099893
-
A new class of anthelmintics effective against drug-resistant nematodes
-
Kaminsky R, Ducray P, Jung M, Clover R, Rufener L, et al. (2008) A new class of anthelmintics effective against drug-resistant nematodes. Nature 452: 176-180.
-
(2008)
Nature
, vol.452
, pp. 176-180
-
-
Kaminsky, R.1
Ducray, P.2
Jung, M.3
Clover, R.4
Rufener, L.5
-
88
-
-
48349144172
-
Identification of the amino-acetonitrile derivative monepantel (AAD 1566) as a new anthelmintic drug development candidate
-
Kaminsky R, Gauvry N, Schorderet Weber S, Skripsky T, Bouvier J, et al. (2008) Identification of the amino-acetonitrile derivative monepantel (AAD 1566) as a new anthelmintic drug development candidate. Parasitology research 103: 931-939.
-
(2008)
Parasitology Research
, vol.103
, pp. 931-939
-
-
Kaminsky, R.1
Gauvry, N.2
Schorderet Weber, S.3
Skripsky, T.4
Bouvier, J.5
-
89
-
-
84878768610
-
Molecular Characterization and Functions of Fatty Acid and Retinoid Binding Protein Gene (Ab-far-1) in Aphelenchoides besseyi
-
Cheng X, Xiang Y, Xie H, Xu C-L, Xie T-F, et al. (2013) Molecular Characterization and Functions of Fatty Acid and Retinoid Binding Protein Gene (Ab-far-1) in Aphelenchoides besseyi. PLoS One 8: e66011.
-
(2013)
PLoS One
, vol.8
-
-
Cheng, X.1
Xiang, Y.2
Xie, H.3
Xu, C.-L.4
Xie, T.-F.5
-
90
-
-
0035479012
-
River blindness: a role for parasite retinoid-binding proteins in the generation of pathology?
-
Bradley JE, Nirmalan N, Kläger SL, Faulkner H, Kennedy MW, (2001) River blindness: a role for parasite retinoid-binding proteins in the generation of pathology? Trends in parasitology 17: 471-475.
-
(2001)
Trends in Parasitology
, vol.17
, pp. 471-475
-
-
Bradley, J.E.1
Nirmalan, N.2
Kläger, S.L.3
Faulkner, H.4
Kennedy, M.W.5
-
91
-
-
0037242769
-
Ac-FAR-1, a 20 kDa fatty acid- and retinol-binding protein secreted by adult Ancylostoma caninum hookworms: gene transcription pattern, ligand binding properties and structural characterisation
-
Basavaraju SV, Zhan B, Kennedy MW, Liu Y, Hawdon J, et al. (2003) Ac-FAR-1, a 20 kDa fatty acid- and retinol-binding protein secreted by adult Ancylostoma caninum hookworms: gene transcription pattern, ligand binding properties and structural characterisation. Mol Biochem Parasitol 126: 63-71.
-
(2003)
Mol Biochem Parasitol
, vol.126
, pp. 63-71
-
-
Basavaraju, S.V.1
Zhan, B.2
Kennedy, M.W.3
Liu, Y.4
Hawdon, J.5
-
92
-
-
0035365837
-
A surface-associated retinol- and fatty acid-binding protein (Gp-FAR-1) from the potato cyst nematode Globodera pallida: lipid binding activities, structural analysis and expression pattern
-
Prior A, Jones JT, Blok VC, Beauchamp J, McDermott L, et al. (2001) A surface-associated retinol- and fatty acid-binding protein (Gp-FAR-1) from the potato cyst nematode Globodera pallida: lipid binding activities, structural analysis and expression pattern. Biochem J 356: 387-394.
-
(2001)
Biochem J
, vol.356
, pp. 387-394
-
-
Prior, A.1
Jones, J.T.2
Blok, V.C.3
Beauchamp, J.4
McDermott, L.5
-
93
-
-
0037242769
-
Ac-FAR-1, a 20 kDa fatty acid- and retinol-binding protein secreted by adult Ancylostoma caninum hookworms: gene transcription pattern, ligand binding properties and structural characterisation
-
Basavaraju SV, Zhan B, Kennedy MW, Liu Y, Hawdon J, et al. (2003) Ac-FAR-1, a 20 kDa fatty acid- and retinol-binding protein secreted by adult Ancylostoma caninum hookworms: gene transcription pattern, ligand binding properties and structural characterisation. Molecular and biochemical parasitology 126: 63-71.
-
(2003)
Molecular and Biochemical Parasitology
, vol.126
, pp. 63-71
-
-
Basavaraju, S.V.1
Zhan, B.2
Kennedy, M.W.3
Liu, Y.4
Hawdon, J.5
-
94
-
-
77950390653
-
Molecular evidence for a functional ecdysone signaling system in Brugia malayi
-
Tzertzinis G, Egana AL, Palli SR, Robinson-Rechavi M, Gissendanner CR, et al. (2010) Molecular evidence for a functional ecdysone signaling system in Brugia malayi. PLoS Negl Trop Dis 4: 0000625.
-
(2010)
PLoS Negl Trop Dis
, vol.4
, pp. 0000625
-
-
Tzertzinis, G.1
Egana, A.L.2
Palli, S.R.3
Robinson-Rechavi, M.4
Gissendanner, C.R.5
|