Gene clustering based on RNAi phenotypes of ovary-enriched genes in C. elegans

Current Biology

Volumn 12, Issue 22, 2002, Pages 1959-1964

  Piano, Fabio ^a,b   Schetter, Aaron J ^a   Morton, Diane G ^a   Gunsalus, Kristin C ^a,b   Reinke, Valerie ^c,d   Kim, Stuart K ^d   Kemphues, Kenneth J ^a  

^a Department of Molecular Biology and Genetics   (United States)

^b NEW YORK UNIVERSITY   (United States)

^c STANFORD UNIVERSITY MEDICAL CENTER   (United States)

^d YALE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

SMALL INTERFERING RNA;

ANIMAL; ANIMAL EMBRYO; ARTICLE; CAENORHABDITIS ELEGANS; CHROMOSOME MAP; FEMALE; GENE EXPRESSION REGULATION; GENETICS; LETHAL GENE; METHODOLOGY; MULTIGENE FAMILY; OVARY; PHENOTYPE; PHYSIOLOGY; PRENATAL DEVELOPMENT;

ANIMALS; CAENORHABDITIS ELEGANS; CHROMOSOME MAPPING; EMBRYO, NONMAMMALIAN; FEMALE; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENES, LETHAL; MULTIGENE FAMILY; OVARY; PHENOTYPE; RNA, SMALL INTERFERING;

ANIMALIA; CAENORHABDITIS; CAENORHABDITIS ELEGANS; INVERTEBRATA;

EID: 0037137443     PISSN: 09609822     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0960-9822(02)01301-5     Document Type: Article

References (18)

1. Reinke, V., Smith, H.E., Nance, J., Wang, J., Van Doren, C., Begley, R., Jones, S.J., Davis, E.B., Scherer, S., Ward, S., et al. (2000). A global profile of germline gene expression in C. elegans. Mol. Cell 6, 605-616.
2. Piano, F., Schetter, A.J., Mangone, M., Stein, L., and Kemphues, K.J. (2000). RNAi analysis of genes expressed in the ovary of Caenorhabditis elegans. Curr. Biol. 10, 1619-1622.
3. Maeda, I., Kohara, Y., Yamamoto, M., and Sugimoto, A. (2001). Large-scale analysis of gene function in Caenorhabditis elegans by high-throughput RNAi. Curr. Biol. 11, 171-176.
4. Walhout, A.J.M., Reboul, R., Shtanko, O., Bertin, N., Vaglio, P., Ge, H., Lee, H., Doucette-Stamm, L., Gunsalus, K.C., Schetter, A.J., et al. (2002). Integration of interactome, phenome, and transcriptome maps of the C. elegans germline. Curr. Biol. 12, 1952-1958.
5. Fire, A., Xu, S., Montgomery, M.K., Kostas, S.A., Driver, S.E., and Mello, C.C. (1998). Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 391, 806-811.
6. Gönczy, P., Echeverri, G., Oegema, K., Coulson, A., Jones, S.J., Copley, R.R., Duperon, J., Oegema, J., Brehm, M., Cassin, E., et al. (2000). Functional genomic analysis of cell division in C. elegans using RNAi of genes on chromosome III. Nature 408, 331-336.
7. Fraser, A.G., Kamath, R.S., Zipperlen, P., Martinez-Campos, M., Sohrmann, M., and Ahringer, J. (2000). Functional genomic analysis of C. elegans chromosome I by systematic RNA interference. Nature 408, 325-330.
8. Kelly, W.G., Schaner, C.E., Dernburg, A.F., Lee, M.H., Kim, S.K., Villeneuve, A.M., and Reinke, V. (2002). X-chromosome silencing in the germline of C. elegans. Development 129, 479-492.
9. Piano, F., and Gunsalus, K. (2002). RNAi-based functional genomics in C. elegans. Curr. Genomics 3, 69-81.
10. Zipperlen, P., Fraser, A.G., Kamath, R.S., Martinez-Campos, M., and Ahringer, J. (2001). Roles for 147 embryonic lethal genes on C. elegans chromosome I identified by RNA interference and video microscopy. EMBO J. 20, 3984-3992.
11. Swofford, D.L. (2002). PAUP*, Phylogenetic Analysis Using Parsimony (*and Other Methods). (Sunderland, MA: Sinauer).
12. Boulton, S.J., Gartner, A., Reboul, J., Vaglio, P., Dyson, N., Hill, D.E., and Vidal, M. (2002). Combined functional genomic maps of the C. elegans DNA damage response. Science 295, 127-131.
13. Reeves, R., and Nissen, M.S. (1990). The A.T-DNA-binding domain of mammalian high mobility group I chromosomal proteins. A novel peptide motif for recognizing DNA structure. J. Biol. Chem. 265, 8573-8582.
14. Encalada, S.E., Martin, P.R., Phillips, J.B., Lyczak, R., Hamill, D.R., Swan, K.A., and Bowerman, B. (2000). DNA replication defects delay cell division and disrupt cell polarity in early Caenorhabditis elegans embryos. Dev. Biol. 228, 225-238.
15. Wheatley, S.P., O'Connell, C.B., and Wang, Y. (1998). Inhibition of chromosomal separation provides insights into cleavage furrow stimulation in cultured epithelial cells. Mol. Biol. Cell 9, 2173-2184.
16. Mount, W.D. (2001). Bioinformatics: Sequence and Genome Analysis (Cold Spring Harbor, NY: Cold Spring Harbor Press).
17. Hillis, D.M., and Huelsenbeck, J.P. (1992). Signal, noise, and reliability in molecular phylogenetic analyses. J. Hered. 83, 189-195.
18. Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. (1997). Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402.