메뉴 건너뛰기




Volumn 128, Issue , 2014, Pages 57-63

Comparison of genome-wide DNA methylation in urothelial carcinomas of patients with and without arsenic exposure

Author keywords

Arsenic; Cumulative Arsenic Exposure; DNA methylation; Urothelial carcinoma; value

Indexed keywords

ALPHA CATENIN; ARSENIC; CATENIN ALPHA 2; DNA; F BOX PROTEIN; F BOX PROTEIN 39; NEUROPEPTIDE Y RECEPTOR; NEUROPEPTIDE Y RECEPTOR Y2; PHOTOCADHERIN BETA; POTASSIUM CHANNEL; POTASSIUM CHANNEL SUBFAMILY K MEMBER 17; STRATUM CORNEUM CHYMOTRYPTIC ENZYME; UNCLASSIFIED DRUG; ZINC FINGER PROTEIN; ZINC FINGER PROTEIN 132;

EID: 84895130443     PISSN: 00139351     EISSN: 10960953     Source Type: Journal    
DOI: 10.1016/j.envres.2013.10.006     Document Type: Article
Times cited : (33)

References (46)
  • 1
    • 45749137977 scopus 로고    scopus 로고
    • Drinking-water arsenic exposure modulates gene expression in human lymphocytes from a U.S. population
    • Andrew A., et al. Drinking-water arsenic exposure modulates gene expression in human lymphocytes from a U.S. population. Environ. Health Perspect. 2008, 116:524-531.
    • (2008) Environ. Health Perspect. , vol.116 , pp. 524-531
    • Andrew, A.1
  • 2
    • 84856306090 scopus 로고    scopus 로고
    • Genome-wide DNA methylation profiling using Infinium® assay
    • Bibikova M., et al. Genome-wide DNA methylation profiling using Infinium® assay. Epigenomics 2009, 1:177-200.
    • (2009) Epigenomics , vol.1 , pp. 177-200
    • Bibikova, M.1
  • 3
    • 0018905464 scopus 로고
    • Microinjection and localization of a 130K protein in living fibroblasts: a relationship to actin and fibronectin
    • Burridge K., et al. Microinjection and localization of a 130K protein in living fibroblasts: a relationship to actin and fibronectin. Cell 1980, 19:587-595.
    • (1980) Cell , vol.19 , pp. 587-595
    • Burridge, K.1
  • 4
    • 34547665306 scopus 로고    scopus 로고
    • Arsenic salts induced autophagic cell death and hypermethylation of DAPK promoter in SV-40 immortalized human uroepithelial cells
    • Chai C., et al. Arsenic salts induced autophagic cell death and hypermethylation of DAPK promoter in SV-40 immortalized human uroepithelial cells. Toxicol. Lett. 2007, 173:48-56.
    • (2007) Toxicol. Lett. , vol.173 , pp. 48-56
    • Chai, C.1
  • 5
    • 31144434402 scopus 로고    scopus 로고
    • DNA hypermethylation of promoter of gene p53 and p16 in arsenic-exposed people with and without malignancy
    • Chanda S., et al. DNA hypermethylation of promoter of gene p53 and p16 in arsenic-exposed people with and without malignancy. Toxicol. Sci. 2006, 89:431-437.
    • (2006) Toxicol. Sci. , vol.89 , pp. 431-437
    • Chanda, S.1
  • 6
    • 36549053542 scopus 로고    scopus 로고
    • Urothelial carcinomas arising in arsenic-contaminated areas are associated with hypermethylation of the gene promoter of the death-associated protein kinase
    • Chen W.T., et al. Urothelial carcinomas arising in arsenic-contaminated areas are associated with hypermethylation of the gene promoter of the death-associated protein kinase. Histopathology 2007, 51:785-792.
    • (2007) Histopathology , vol.51 , pp. 785-792
    • Chen, W.T.1
  • 7
    • 0022369570 scopus 로고
    • Malignant neoplasms among residents of a Blackfoot disease-endemic area in Taiwan: high-arsenic artesian well water and cancers
    • Chen C.J., et al. Malignant neoplasms among residents of a Blackfoot disease-endemic area in Taiwan: high-arsenic artesian well water and cancers. Cancer Res. 1985, 45:5895-5899.
    • (1985) Cancer Res. , vol.45 , pp. 5895-5899
    • Chen, C.J.1
  • 8
    • 0023866736 scopus 로고
    • Arsenic and cancers
    • Chen C.J., et al. Arsenic and cancers. Lancet 1988, 1:414-415.
    • (1988) Lancet , vol.1 , pp. 414-415
    • Chen, C.J.1
  • 9
    • 0025171686 scopus 로고
    • Ecological correlation between arsenic level in well water and age-adjusted mortality from malignant neoplasms
    • Chen C.J., et al. Ecological correlation between arsenic level in well water and age-adjusted mortality from malignant neoplasms. Cancer Res. 1990, 50:5470-5474.
    • (1990) Cancer Res. , vol.50 , pp. 5470-5474
    • Chen, C.J.1
  • 10
    • 0026498334 scopus 로고
    • Cancer potential in liver, lung, bladder and kidney due to ingested inorganic arsenic in drinking water
    • Chen C.J., et al. Cancer potential in liver, lung, bladder and kidney due to ingested inorganic arsenic in drinking water. Br. J. Cancer 1992, 66:888-892.
    • (1992) Br. J. Cancer , vol.66 , pp. 888-892
    • Chen, C.J.1
  • 11
    • 79960101746 scopus 로고    scopus 로고
    • Detection of bladder cancer using novel DNA methylation biomarkers in urine sediments
    • Chung W., et al. Detection of bladder cancer using novel DNA methylation biomarkers in urine sediments. Cancer Epidemiol. Biomark. Prev. 2011, 20:1483-1491.
    • (2011) Cancer Epidemiol. Biomark. Prev. , vol.20 , pp. 1483-1491
    • Chung, W.1
  • 12
    • 19944427605 scopus 로고    scopus 로고
    • Spink5-deficient mice mimic Netherton syndrome through degradation of desmoglein 1 by epidermal protease hyperactivity
    • Descargues P., et al. Spink5-deficient mice mimic Netherton syndrome through degradation of desmoglein 1 by epidermal protease hyperactivity. Nat. Genet. 2005, 37:56-65.
    • (2005) Nat. Genet. , vol.37 , pp. 56-65
    • Descargues, P.1
  • 13
    • 46249088370 scopus 로고    scopus 로고
    • Lumi: a bioconductor package for processing Illumina microarray
    • Du P., et al. lumi: a bioconductor package for processing Illumina microarray. Bioinformatics 2008, 24:1547-1548.
    • (2008) Bioinformatics , vol.24 , pp. 1547-1548
    • Du, P.1
  • 14
    • 0031585877 scopus 로고    scopus 로고
    • Vinclin promotes cell spreading by mechanically coupling integrins to the cytoskeleton
    • Ezzell R., et al. Vinclin promotes cell spreading by mechanically coupling integrins to the cytoskeleton. Exp. Cell Res. 1997, 231:14-26.
    • (1997) Exp. Cell Res. , vol.231 , pp. 14-26
    • Ezzell, R.1
  • 15
    • 80053356357 scopus 로고    scopus 로고
    • Genome-wide methylation analysis identifies genes specific to breast cancer hormone receptor status and risk of recurrence
    • Fackler M., et al. Genome-wide methylation analysis identifies genes specific to breast cancer hormone receptor status and risk of recurrence. Cancer Res. 2011, 71:6195-6207.
    • (2011) Cancer Res. , vol.71 , pp. 6195-6207
    • Fackler, M.1
  • 16
    • 0034680333 scopus 로고    scopus 로고
    • Sequencing and expression analysis of the serine protease gene cluster located in chromosome 19q13 region
    • Gan L., et al. Sequencing and expression analysis of the serine protease gene cluster located in chromosome 19q13 region. Gene 2000, 257:119-130.
    • (2000) Gene , vol.257 , pp. 119-130
    • Gan, L.1
  • 17
    • 0018692430 scopus 로고
    • 130K protein from chicken gizzard - its localization at the termini of microfilament bundles in cultured chicken-cells
    • Geiger B 130K protein from chicken gizzard - its localization at the termini of microfilament bundles in cultured chicken-cells. Cell 1979, 18:193-205.
    • (1979) Cell , vol.18 , pp. 193-205
    • Geiger, B.1
  • 18
    • 55949137722 scopus 로고    scopus 로고
    • Persistent epigenetic differences associated with prenatal exposure to famine in humans
    • Heijmans B., et al. Persistent epigenetic differences associated with prenatal exposure to famine in humans. Proc. Natl. Acad. Sci. U.S.A. 2008, 105:17046-17049.
    • (2008) Proc. Natl. Acad. Sci. U.S.A. , vol.105 , pp. 17046-17049
    • Heijmans, B.1
  • 19
    • 63549121485 scopus 로고    scopus 로고
    • Matching method for observational microarray studies
    • Heller R., et al. Matching method for observational microarray studies. Bioinformatics 2009, 25:904-909.
    • (2009) Bioinformatics , vol.25 , pp. 904-909
    • Heller, R.1
  • 20
    • 84867890206 scopus 로고    scopus 로고
    • Environmental arsenic exposure and DNA methylation of the tumor suppressor gene p16 and the DNA repair gene MLH1: effect of arsenic metabolism and genotype
    • Hossain M., et al. Environmental arsenic exposure and DNA methylation of the tumor suppressor gene p16 and the DNA repair gene MLH1: effect of arsenic metabolism and genotype. Metallomics 2012, 4:1167-1175.
    • (2012) Metallomics , vol.4 , pp. 1167-1175
    • Hossain, M.1
  • 21
    • 39149104017 scopus 로고    scopus 로고
    • Comparative genomic hybridization study of arsenic-exposed and non-arsenic-exposed urinary transitional cell carcinoma
    • Hsu L.I., et al. Comparative genomic hybridization study of arsenic-exposed and non-arsenic-exposed urinary transitional cell carcinoma. Toxicol. Appl. Pharmacol. 2008, 227:229-238.
    • (2008) Toxicol. Appl. Pharmacol. , vol.227 , pp. 229-238
    • Hsu, L.I.1
  • 22
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang D., et al. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. protoc. 2009, 4:44-57.
    • (2009) Nat. protoc. , vol.4 , pp. 44-57
    • Huang, D.1
  • 23
    • 58549112996 scopus 로고    scopus 로고
    • Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
    • Huang D., et al. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucl. Acids Res. 2009, 37:1-13.
    • (2009) Nucl. Acids Res. , vol.37 , pp. 1-13
    • Huang, D.1
  • 24
    • 33748189773 scopus 로고    scopus 로고
    • IARC Monographs on the Evaluation of Carcinogenic Risks to Humans
    • Including Arsenic, IARC, Lyon
    • International Agency for Research on Cancer, 2004. IARC Monographs on the Evaluation of Carcinogenic Risks to Humans. Some Drinking-water Disinfectants and Contaminants, Including Arsenic, IARC, Lyon, pp. 1-512.
    • (2004) Some Drinking-water Disinfectants and Contaminants , pp. 1-512
  • 25
    • 84941769823 scopus 로고    scopus 로고
    • IARC Monographs on the Evaluation of Carcinogenic Risks to Humans
    • IARC, Lyon
    • International Agency for Research on Cancer, 2012. IARC Monographs on the Evaluation of Carcinogenic Risks to Humans. A Review of Human Carcinogens: Arsenic, Metals, Fibres, and Dusts, IARC, Lyon, pp. 1-469.
    • (2012) A Review of Human Carcinogens: Arsenic, Metals, Fibres, and Dusts , pp. 1-469
  • 26
    • 78649988294 scopus 로고    scopus 로고
    • Candidate single nucleotide polymorphism markers for arsenic responsiveness of protein targets
    • Isokpehi R.D., et al. Candidate single nucleotide polymorphism markers for arsenic responsiveness of protein targets. Bioinform. Biol. Insights 2010, 11:99-111.
    • (2010) Bioinform. Biol. Insights , vol.11 , pp. 99-111
    • Isokpehi, R.D.1
  • 27
    • 31544467813 scopus 로고    scopus 로고
    • De novo CpG island methylation in human cancer cells
    • Jair K.W., et al. De novo CpG island methylation in human cancer cells. Cancer Res. 2006, 66:682-692.
    • (2006) Cancer Res. , vol.66 , pp. 682-692
    • Jair, K.W.1
  • 28
    • 59349117680 scopus 로고    scopus 로고
    • Epigenetic mediated transcriptional activation of WNT5A participates in arsenical-associated malignant transformation
    • Jensen T.J., et al. Epigenetic mediated transcriptional activation of WNT5A participates in arsenical-associated malignant transformation. Toxicol. Appl. Pharmacol. 2009, 235:39-46.
    • (2009) Toxicol. Appl. Pharmacol. , vol.235 , pp. 39-46
    • Jensen, T.J.1
  • 29
    • 0000613310 scopus 로고
    • Zinc fingers: a novel protein motif for nucleic acid recognition
    • Klug A., et al. Zinc fingers: a novel protein motif for nucleic acid recognition. Trends Biochem. Sci. 1987, 12:464-469.
    • (1987) Trends Biochem. Sci. , vol.12 , pp. 464-469
    • Klug, A.1
  • 30
    • 78149262820 scopus 로고    scopus 로고
    • A statistical framework for Illumina DNA methylation arrays
    • Kuan P.F., et al. A statistical framework for Illumina DNA methylation arrays. Bioinformatics 2010, 26:2849-2855.
    • (2010) Bioinformatics , vol.26 , pp. 2849-2855
    • Kuan, P.F.1
  • 31
    • 77956525903 scopus 로고    scopus 로고
    • Genomewide DNA methylation analysis reveals novel targets for drug development in mantle cell lymphoma
    • Leshchenko V.V., et al. Genomewide DNA methylation analysis reveals novel targets for drug development in mantle cell lymphoma. Blood 2010, 116:1025-1034.
    • (2010) Blood , vol.116 , pp. 1025-1034
    • Leshchenko, V.V.1
  • 32
    • 29744460315 scopus 로고    scopus 로고
    • Carcinogen exposure and gene promoter hypermethylation in bladder cancer
    • Marsit C.J., et al. Carcinogen exposure and gene promoter hypermethylation in bladder cancer. Carcinogenesis 2006, 27:112-116.
    • (2006) Carcinogenesis , vol.27 , pp. 112-116
    • Marsit, C.J.1
  • 33
    • 33845671718 scopus 로고    scopus 로고
    • Carcinogen exposure and epigenetic silencing in bladder cancer
    • Marsit C.J., et al. Carcinogen exposure and epigenetic silencing in bladder cancer. Ann. New York Acad. Sci. 2006, 1076:810-821.
    • (2006) Ann. New York Acad. Sci. , vol.1076 , pp. 810-821
    • Marsit, C.J.1
  • 34
    • 0342601549 scopus 로고    scopus 로고
    • Distribution and functional effects of neuropeptide Y on equine ureteral smooth muscle and resistance arteries
    • Prieto D., et al. Distribution and functional effects of neuropeptide Y on equine ureteral smooth muscle and resistance arteries. Regul. Pept. 1997, 69:155-165.
    • (1997) Regul. Pept. , vol.69 , pp. 155-165
    • Prieto, D.1
  • 35
    • 11244286043 scopus 로고    scopus 로고
    • Heterogeneity of the neuropeptide Y (NPY) contractile and relaxing receptors in horse penile small arteries
    • Prieto D., et al. Heterogeneity of the neuropeptide Y (NPY) contractile and relaxing receptors in horse penile small arteries. Br. J. Pharmacol. 2004, 143:976-986.
    • (2004) Br. J. Pharmacol. , vol.143 , pp. 976-986
    • Prieto, D.1
  • 36
    • 0029100680 scopus 로고
    • Cloning and functional expression of a cDNA encoding a human type 2 neuropeptide Y receptor
    • Rose P.M., et al. Cloning and functional expression of a cDNA encoding a human type 2 neuropeptide Y receptor. J. Biol. Chem. 1995, 270:22661-22664.
    • (1995) J. Biol. Chem. , vol.270 , pp. 22661-22664
    • Rose, P.M.1
  • 37
    • 84861572881 scopus 로고    scopus 로고
    • Genome-wide DNA methylation profiles in hepatocellular carcinoma
    • Shen J., et al. Genome-wide DNA methylation profiles in hepatocellular carcinoma. Hepatology 2012, 55:1799-1808.
    • (2012) Hepatology , vol.55 , pp. 1799-1808
    • Shen, J.1
  • 38
    • 79951831638 scopus 로고    scopus 로고
    • Epigenetic changes in individuals with arsenicosis
    • Smeester L., et al. Epigenetic changes in individuals with arsenicosis. Chem. Res. Toxicol. 2011, 24:165-167.
    • (2011) Chem. Res. Toxicol. , vol.24 , pp. 165-167
    • Smeester, L.1
  • 39
    • 4644256972 scopus 로고    scopus 로고
    • Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions
    • Suzuki Y., et al. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. Genome Res. 2004, 14:1711-1718.
    • (2004) Genome Res. , vol.14 , pp. 1711-1718
    • Suzuki, Y.1
  • 40
    • 31544457309 scopus 로고    scopus 로고
    • Differential requirement for DNA methyltransferase 1 in maintaining human cancer cell gene promoter hypermethylation
    • Ting A.H., et al. Differential requirement for DNA methyltransferase 1 in maintaining human cancer cell gene promoter hypermethylation. Cancer Res. 2006, 66:729-735.
    • (2006) Cancer Res. , vol.66 , pp. 729-735
    • Ting, A.H.1
  • 41
    • 70349999407 scopus 로고    scopus 로고
    • DNA methylation differences after exposure to prenatal famine are common and timing- and sex-specific
    • Tobi E.W., et al. DNA methylation differences after exposure to prenatal famine are common and timing- and sex-specific. Hum. Mol. Genet. 2009, 18:4046-4053.
    • (2009) Hum. Mol. Genet. , vol.18 , pp. 4046-4053
    • Tobi, E.W.1
  • 42
    • 0017622358 scopus 로고
    • Effects and dose-response relationships of skin cancer and Blackfoot disease with arsenic
    • Tseng W.P. Effects and dose-response relationships of skin cancer and Blackfoot disease with arsenic. Environ. Health Perspect. 1977, 19:109-119.
    • (1977) Environ. Health Perspect. , vol.19 , pp. 109-119
    • Tseng, W.P.1
  • 43
    • 70350664664 scopus 로고    scopus 로고
    • Multiple testing in genome-wide association studies via hidden Markov models
    • Wei Z., et al. Multiple testing in genome-wide association studies via hidden Markov models. Bioinformatics 2009, 25:2802-2808.
    • (2009) Bioinformatics , vol.25 , pp. 2802-2808
    • Wei, Z.1
  • 44
    • 78149277443 scopus 로고    scopus 로고
    • DNA methylation profiles delineate etiologic heterogeneity and clinically important subgroups of bladder cancer
    • Wilhelm-Benartzi C.S., et al. DNA methylation profiles delineate etiologic heterogeneity and clinically important subgroups of bladder cancer. Carcinogenesis 2010, 31:1972-1976.
    • (2010) Carcinogenesis , vol.31 , pp. 1972-1976
    • Wilhelm-Benartzi, C.S.1
  • 45
    • 0031577334 scopus 로고    scopus 로고
    • DNA (cytosine-5)-methyltransferases in mouse cells and tissues: studies with a mechanism-based probe
    • Yoder J.A., et al. DNA (cytosine-5)-methyltransferases in mouse cells and tissues: studies with a mechanism-based probe. J. Mol. Biol. 1997, 270:385-395.
    • (1997) J. Mol. Biol. , vol.270 , pp. 385-395
    • Yoder, J.A.1
  • 46
    • 0030885707 scopus 로고    scopus 로고
    • Association of arsenic-induced malignant transformation with DNA hypomethylation and aberrant gene expression
    • Zhao C.Q., et al. Association of arsenic-induced malignant transformation with DNA hypomethylation and aberrant gene expression. Proc. Natl. Acad. Sci. U.S.A. 1997, 94:10907-10912.
    • (1997) Proc. Natl. Acad. Sci. U.S.A. , vol.94 , pp. 10907-10912
    • Zhao, C.Q.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.