Molecular systematics of the deep-sea bamboo corals (Octocorallia: Isididae: Keratoisidinae) from New Zealand with descriptions of two new species of Keratoisis

Molecular Phylogenetics and Evolution

Volumn 74, Issue 1, 2014, Pages 15-28

  Dueñas, Luisa F ^a   Alderslade, Phil ^b   Sánchez, Juan A ^a  

^a UNIVERSIDAD DE LOS ANDES   (Colombia)

^b CSIRO   (Australia)

Author keywords

Antarctica; Igr4; Large sub unit rRNA 16S; MtMutS; Octocoral; Taxonomy

Indexed keywords

ANIMAL; ANTARCTICA; ANTHOZOA; ARTICLE; BAYES THEOREM; DNA SEQUENCE; GENETICS; HISTOLOGY; IGR4; LARGE SUB-UNIT RRNA 16S; MTMUTS; NEW ZEALAND; OCTOCORAL; PHYLOGENY; SCANNING ELECTRON MICROSCOPY; STATISTICAL MODEL; TAXONOMY;

ANTARCTICA; IGR4; LARGE SUB-UNIT RRNA 16S; MTMUTS; OCTOCORAL; TAXONOMY;

ANIMALS; ANTHOZOA; BAYES THEOREM; LIKELIHOOD FUNCTIONS; MICROSCOPY, ELECTRON, SCANNING; NEW ZEALAND; PHYLOGENY; SEQUENCE ANALYSIS, DNA;

EID: 84894676289     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2014.01.031     Document Type: Article

References (47)

1. Alderslade, P., 1998. Revisionary systematics in the gorgonian family, Isididae, with descriptions of numerous new taxa (Coelenterata: Octocorallia). Records of the Western Australian Museum Supplement No. 55, 359pp.
2. Alderslade P., McFadden C.S. A new genus and species of the family Isididae (Coelenterata: Octocorallia) from a CMAR Biodiversity study, and a discussion on the subfamilial placement of some nominal isidid genera. Zootaxa 2012, 3154:21-39.
3. Allard, G., Sinclair, D.J., Williams, B., Hillaire-Marcel, C., Ross, S., Risk, M., 2005. Dendrochronology in Bamboo? Geochemical profiles and reproducibility in a specimen of the deep-water bamboo coral, Keratoisis spp. In: Science, B.O.M. (Ed.), Third International Symposium on Deep-Sea Corals: Science and Management., Rosenstiel School of Marine and Atmospheric Science, Miami, Florida, USA, p. 252.
4. Andrews A.H., Stone R.P., Lundstrom C.C., DeVogelaere A.P. Growth rate and age determination of bamboo corals from the northeastern Pacific Ocean using refined 210Pb dating. Mar. Ecol. Prog. Ser. 2009, 397:173-185.
5. Baco A.R., Cairns S.D. Comparing molecular variation to morphological species designations in the deep-sea coral narella reveals new insights into seamount coral ranges. PLoS ONE 2012, 7:e45555.
6. Bayer F. Octocorallia. Treatise on Invertebrate Paleontology Part F: Coelenterata 1956, Geological Society of America and University of Kansas Press, Lawrence. R.C. Moore (Ed.).
7. Bayer F. A new isidid octocoral (Anthozoa:Gorgonace) from new caledonia, with descriptions of other new species from elsewhere in the Pacific Ocean. Proc. Biol. Soc. Wash. 1990, 103:205-228.
8. Bayer, F.M., Cairns, S.D., 2004. The unpublished plates for A. E. Verrill's unfinished report on the Alcyonaria of the "Blake" expeditions. i-viii + 156 pls., Dept. of Zoology, National Museum of Natural History, Washington, D. C.
9. Bayer F., Stefani J. New and previously known taxa of isidid octocorals (Coelenterata:Gorgonacea), partly from Antartic Waters. Proc. Biol. Soc. Wash. 1987, 100:937-991.
10. Cartes J.E., LoIacono C., Mamouridis V., López-Pérez C., Rodríguez P. Geomorphological, trophic and human influences on the bamboo coral Isidella elongata assemblages in the deep Mediterranean: to what extent does Isidella form habitat for fish and invertebrates?. Deep-Sea Res. I 2013, 76:52-65.
11. Coffroth M.A., Lasker H.R., Diamond M.E., Bruenn J.A., Berringham E. DNA fingerprints of a gorgonian coral: a method for detecting clonal structure in a vegetative species. Mar. Biol. 1992, 114:317-325.
12. Drummond A.J., Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 2007, 7:214.
13. Dueñas L.F., Sánchez J.A. Character lability in deep-sea bamboo corals (Octocorallia, Isididae, Keratoisidinae). Mar. Ecol. Prog. Ser. 2009, 397:11-23.
14. Edgar R. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, 32:1792-1797.
15. Ehrlich H., Etnoyer P., Litvinov S., Olennikova M., Domaschke H., Hanke T., Born R., Meissner H., Worch H. Biomaterial structure in deep-sea bamboo coral (Anthozoa: Gorgonacea: Isididae): perspectives for the development of bone implants and templates for tissue engineering. Mat.-wiss. u. Werkstofftech 2006, 37:552-557.
16. Etnoyer P.J. A new species of isidella bamboo coral (Octocorallia: Alcyonacea: Isididae) from northeast Pacific seamounts. Proc. Biol. Soc. Wash. 2008, 121:541-553.
17. Etnoyer, P., Cairns, S.D., Sanchez, J.A., Reed, J.K., Lopez, J.V., Schroeder, W.W., Brooke, S.D., Watling, L., Baco-Taylor, A., Williams, G.C., Lindner, A., France, S.C., Bruckner, A.A., 2006. Deep-Sea Coral Collection Protocols. NOAA Technical Memorandum NMFS-OPR-28, Silver Spring, MD.
18. Fehrer J., Krak K., Chrtek J. Intra-individual polymorphism in diploid and apomictic polyploid hawkweeds (Hieracium, Lactuceae, Asteraceae): disentangling phylogenetic signal, reticulation, and noise. BMC Evol. Biol. 2009, 9:239.
19. France S.C. Genetic analysis of bamboo corals (Cnidaria: Octocorallia: Isididae): does lack of colony branching distinguish Lepidisis from keratoisis?. Bull. Mar. Sci. 2007, 81:323-333.
20. France S.C., Rosel P.E., Agenbroad J.E., Mullineaux L.S., Kocher T.D. DNA sequence variation of mitochondrial large-subunit rRNA provides support for a two subclass organization of the Anthozoa (Cnidaria). Mol. Mar. Biol. Biotech. 1996, 5:15-28.
21. Glor R.E. Phylogenetic insights on adaptive radiation. Annu. Rev. Ecol. Evol. Syst. 2010, 41:251-270.
22. Grant, R., 1976. The marine fauna of New Zealand: Isididae (Octocorallia:Gorgonacea) from New Zealand and the Antartic. New Zealand Oceanographic Institute Memoir 66.
23. Guindon S., Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 2003, 52:696-704.
24. Holterman M. Phylogenetic Relationships within the Phylum Nematoda as Revealed by Risomal DNA, and their Biological Implications 2008, Wageningen University, Wageningen, The Netherlands.
25. Koslow J.A., Gowlett-Holmes K., Lowry J.K., O'Hara T., Poore G.C.B., Williams A. Seamount benthic macrofauna off southern Tasmania: community structure and impacts of trawling. Mar. Ecol. Prog. Ser. 2001, 213:111-125.
26. Mah C., NizinskiI M., Lundsten L. Phylogenetic revision of the Hippasterinae (Goniasteridae; Asteroidea): systematics of deep sea corallivores, including one new genus and three new species. Zool. J. Linnean Soc. 2010, 160:266-301.
27. Miller, M.A., Pfeiffer, W., Schwartz, T., 2010. Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In: Proceedings of the Gateway Computing Environments Workshop (GCE), New Orleans.
28. Mills, S.W., Mullineaux, L.S., 2005. Sizes and distributions of octocorals Keratoisis sp. and Paragorgia sp. on the New England Seamount Chain: implications for colonization dynamics. In: Science, B.O.M. (Ed.), Third International Symposium on Deep-Sea Corals: Science and Management, Rosenstiel School of Marine and Atmospheric Science, Miami, Florida, USA, p. 252.
29. Noé S., Dullo W.-C. Skeletal morphogenesis and growth mode of modern and fossil deep-water isidid gorgonians (Octocorallia) in the West Pacific (New Zealand and Sea of Okhotsk). Coral Reefs 2006, 25:303-320.
30. Nylander, J., 2004. MrModeltest. version 2 <>. http://www.abc.se/~nylander/mrmodeltest2/mrmodeltest2.html.
31. Poe S., Chubb A.L. Birds in a bush: five genes indicate explosive evolution of avian orders. Evolution 2004, 58:404-415.
32. Posada D. JModelTest: phylogenetic model averaging. Mol. Biol. Evol. 2008, 25:1253-1256.
33. Probert P.K., McKnight D.G., Grove S.L. Benthic invertebrate bycatch from deep-water trawl fishery, Chatham Rise, New Zealand. Aquatic Conserv.: Mar. Freshwater Ecosyst. 1997, 7:27-40.
34. Rambaut, A., Drummond, A.J., 2007. Tracer v1.4. <>. http://beast.bio.ed.ac.uk/Tracer.
35. Rokas A., Carroll S.B. Bushes in the tree of life. PLoS Biol. 2006, 4:e352.
36. Sánchez J.A., Lasker H.R., Taylor D.J. Phylogenetic analyses among octocorals (Cnidaria) according to mitochondrial and nuclear DNA sequences (lsu-rRNA 16S, and ssu-rRNA 18S) support two convergent clades of branching gorgonians. Mol. Phylogenet. Evol. 2003, 29:31-42.
37. Sánchez J.A., Tracy D., Neil H., Marriott P. Coral rings in the deep ocean: using SEM to date New Zealand́s bamboo corals. Water Atmos. 2004, 12:22-23.
38. Schlick-Steiner B.C., Steiner F.M., Seifert B., Stauffer C., Christian E., Crozier R.H. Integrative taxonomy: a multisource approach to exploring biodiversity. Annu. Rev. Entomol. 2010, 55:421-438.
39. Stamatakis A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 2006, 22:2688-2690.
40. Stamatakis A., Hovver P., Rougemont J. A fast bootstrapping algorithm for the RAxML web-servers. Syst. Biol. 2008, 57:758-771.
41. Thresher R.E., MacRae C.M., Wilson N.C., Fallonc S. Feasibility of age determination of deep-water bamboo corals (Gorgonacea; Isididae) from annual cycles in skeletal composition. Deep-Sea Res. I 2009, 56:442-449.
42. Tracey D., Neil H., Marriott P., Andrews A., Cailliet G., Sanchez J. Age and growth of twoo genera of deep-sea bamboo corals (family isididae) in New Zealand waters. Bull. Mar. Sci. 2007, 81:393-408.
43. van der Ham J.L., Brugler M., France S.C. Exploring the utility of an indel-rich, mitochondrial intergenic region as a molecular barcode for bamboo corals (Octocorallia: Isididae). Mar. Genom. 2009, 2:183-192.
44. Verrill A.E. Reports on the Anthozoa, and on some additional species dredged by the "Blake" in 18771879, and by the U. S. Fish Commission Steamer "Fish Hawk" in 188082. Bullet. Museum Compar. Zool. Harvard 1883, 11:1-72.
45. Watling L., France S.C. A new genus and species of bamboo coral (Octocorallia: Isididae: Keratoisidinae) from the New England seamounts. Bullet. Peabody Museum Natural History 2011, 52:209-220.
46. Watling, L., France, S.C., Pante, E., Simpson, A., 2011. Biology of deep-water octocorals. In: Lesser, M. (Ed.), Advances in Marine Biology, Academic Press, pp. 41-122.
47. Zwickl D.J. Genetic Algorithm Approaches for the Phylogenetic Analysis of Large Biological Sequence Datasets under the Maximum Likelihood Criterion 2006, The University of Texas at Austin, Austin.