Genetic analysis of bamboo corals (Cnidaria: Octocorallia: Isididae): Does lack of colony branching distinguish Lepidisis from Keratoisis?

Bulletin of Marine Science

Volumn 81, Issue 3, 2007, Pages 323-333

  France, Scott C ^a  

^a UNIVERSITY OF LOUISIANA AT LAFAYETTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COLONY; CORAL; DEEP WATER; DNA; GENETIC ANALYSIS; MORPHOLOGY; PHYLOGENY; SKELETON; TAXONOMY;

ACANELLA; ALCYONARIA; ANTHOZOA; CNIDARIA; COELENTERATA; ISIDELLA; ISIDIDAE; KERATOISIS; LEPIDISIS;

EID: 38349035751     PISSN: 00074977     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Conference Paper

References (29)

1. Bayer, F. M. 1990. A new isidid octocoral (Anthozoa: Gorgonacea) from New Caledonia, with descriptions of other new species from elsewhere in the Pacific Ocean. Proc. Biol. Soc. Wash. 103: 205-228.
2. _ and J. Stefani. 1987a. New and previously known taxa of isidid octocorals (Coelenterata: Gorgonacea) partly from Antarctic waters. Proc. Biol. Soc. Wash. 100: 937-991.
3. _ and _. 1987b. Isididae (Gorgonacea) de Nouvelle-Calédonie: Nouvelle clé des genres de la famille. Bull. Mus. Natl. Hist. Paris, 4e sér. 9: 47-106.
4. Berntson, E. A. and S. C. France. 2001. Generating DNA sequence information from museum collections of octocoral specimens (Phylum Cnidaria: Class Anthozoa). Bull. Biol. Soc. Wash. 10: 119-129.
5. Cairns, S. D. and F. M. Bayer. 2005. A review of the genus Primnoa (Octocorallia: Gorgonacea: Primnoidae), with the description of two new species. Bull. Mar. Sci. 77: 225-256.
6. France, S. C. and L. L. Hoover. 2001. Analysis of variation in mitochondrial DNA sequences (ND3, ND4L, MSH) among Octocorallia (=Alcyonaria) (Cnidaria: Anthozoa). Bull. Biol. Soc. Wash. 10: 110-118.
7. _ and _. 2002. DNA sequences of the mitochondrial COI gene have low levels of divergence among deep-sea octocorals (Cnidaria: Anthozoa). Hydrobiologia 471: 149-155.
8. Gilbert, D. G. 1992. SeqApp: a biosequence editor and analysis application, ver. 1.9a169. Published electronically, Available from: ftp.bio.indiana.edu/molbio/seqapp.
9. Grant, R. 1976. The marine fauna of New Zealand: Isididae (Octocorallia: Gorgonacea) from New Zealand and the Antarctic. N. Z. Oceanogr. Inst. Mem. 66: 1-54.
10. Huelsenbeck, J. P. and F. Ronquist. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
11. Kükenthal, W. 1915. System und Stammesgeschichte der Isididae. Zool. Anz. 46: 118-158.
12. Lepard, A. 2003. Analysis of variation in the mitochondrial encoded msh1 in the genus Leptogorgia (Cnidaria:Octocorallia) and implications for population and systematic studies. M.Sc. thesis, University of Charleston, South Carolina. 99 p.
13. Mills, S. W. and L. S. Mullineaux. 2005. Size and distributions of octocorals Keratoisis sp. and Paragorgia sp. on the New England Seamount chain: Implications for colonization dynamics. 3rd Int. Symp. on Deep-Sea Corals, Miami, Florida. (Abstract)
14. Muzik, K. 1978. A bioluminescent gorgonian, Lepidisis olapa, new species (Coelenterata: Octocorallia), from Hawaii. Bull. Mar. Sci. 28: 735-741.
15. Neil, H., R. Thresher, D. Tracey, P. Marriott, A. Andrews, and J. Sanchez. 2005. Preliminary evidence of oceanic climate change around New Zealand over the last century: the pole-equator seesaw. 3rd Int. Symp. Deep-Sea Corals, Miami, Florida. (Abstract)
16. Noé, S. U. and W.-C. Dullo. 2006. Skeletal morphogenesis and growth mode of modern and fossil deep-water isidid gorgonians (Octocorallia) in the West Pacific (New Zealand and Sea of Okhotsk). Coral Reefs 25: 303-320.
17. Roark, E. B., T. P. Guilderson, S. Flood-Page, R. B. Dunbar, B. L. Ingram, S. Fallon, and M. McCulloch. 2005. Radiocarbon-based ages and growth rates of bamboo corals from the Gulf of Alaska. Geophys. Res. Lett. 32: 1-5.
18. Ronquist, F. and J. P. Huelsenbeck. 2003. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
19. Sanchez, J. A., C. S. Mcfadden, S. C. France, and H. R. Lasker. 2003. Molecular phylogenetic analyses of shallow-water Caribbean octocorals. Mar. Biol. 142: 975-987.
20. Shearer, T. L., M. J. H. Van Oppen, S. L. Romano, and G. Wörheide. 2002. Slow mitochondrial DNA sequence evolution in the Anthozoa (Cnidaria). Mol. Ecol. 11: 2475-2487.
21. Simmons, M. P. and H. Ochoterena. 2000. Gaps as characters in sequence-based phylogenetic analyses. Syst. Biol. 49: 369-381.
22. _, K. M. Pickett, and M. Miya. 2004. How Meaningful Are Bayesian Support Values? Mol. Biol. Evol. 21: 188-199.
23. Smith, P. J., J. M. McVeagh, J. T. Mingoia, and S. C. France. 2004. Mitochondrial DNA sequence variation in deep-sea bamboo corals (Keratoisidinae) species in the southwest and northwest Pacific Ocean. Mar. Biol. 144: 253-261.
24. Suzuki, Y., G. V. Glazko, and M. Nei. 2002. Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics. PNAS 99: 16138-16143.
25. Swofford, D. L. 2002. PAUP*: Phylogenetic analysis using parsimony (*and other methods), Version 4. Sinauer Associates, Sunderland.
26. Thresher, R., H. Neil, J. Adkins, C. Macrae, N. Wilson, R. Gurney, and D. Tracey. 2007. Environmental effects on the skeletal composition of deep-water gorgonians (Keratoisis spp; Isididae). Bull. Mar. Sci. 81: 409-422.
27. Verrill, A. E. 1883. Reports on the Anthozoa, and on some additional species dredged by the "Blake" in 1877-1879, and by the U. S. Fish Commission Steamer "Fish Hawk" in 1880-82. Bull. Mus. Comp. Zool. Harvard 11: 1-72.
28. Wirshing, H. H., C. G. Messing, C. J. Douady, J. Reed, M. J. Stanhope, and M. S. Shivji. 2005. Molecular evidence for multiple lineages in the gorgonian family Plexauridae (Anthozoa: Octocorallia). Mar. Biol. 147: 497-508.
29. Young, N. D. and J. Healy. 2003. GapCoder automates the use of indel characters in phylogenetic analysis. BMC Bioinformatics 4: 1-6.