-
1
-
-
58149197597
-
DEG 5.0, a database of essential genes in both prokaryotes and eukaryotes
-
Zhang R, Lin Y. DEG 5.0, a database of essential genes in both prokaryotes and eukaryotes. Nucleic Acids Res 37:D455-D458, 2009.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Zhang, R.1
Lin, Y.2
-
2
-
-
0038472048
-
A postgenomic method for predicting essential genes at subsaturation levels of mutagenesis: Application to mycobacterium tuberculosis
-
Lamichhane G, Zignol M, Blades NJ, Geiman DE, Dougherty A, Grosset J, Broman KW, and BishaiWR. A postgenomic method for predicting essential genes at subsaturation levels of mutagenesis:application to Mycobacterium tuberculosis. PNAS 100(12): 7213-7218, 2003.
-
(2003)
PNAS
, vol.100
, Issue.12
, pp. 7213-7218
-
-
Lamichhane, G.1
Zignol, M.2
Blades, N.J.3
Geiman, D.E.4
Dougherty, A.5
Grosset, J.6
Broman, K.W.7
Bishai, W.R.8
-
3
-
-
33747019241
-
Differences in the evolutionary history of disease genes affected by dominant or recessive mutations
-
Furney SJ, Alba MM, Lopez-Bigas N. Differences in the evolutionary history of disease genes affected by dominant or recessive mutations. BMC Genomics 7:165, 2006.
-
(2006)
BMC Genomics
, vol.7
, pp. 165
-
-
Furney, S.J.1
Alba, M.M.2
Lopez-Bigas, N.3
-
4
-
-
71449100299
-
A systems biology tour de force for a near-minimal bacterium
-
Glass JI, Hutchison CA, 3rd, Smith HO, Venter JC. A systems biology tour de force for a near-minimal bacterium. Mol Syst Biol 5:330, 2009.
-
(2009)
Mol Syst Biol
, vol.5
, pp. 330
-
-
Glass, J.I.1
Hutchison III, C.A.2
Smith, H.O.3
Venter, J.C.4
-
5
-
-
0035799707
-
Lethality and centrality in protein networks
-
Jeong H, Mason SP, Barabasi AL, Oltvai ZN. Lethality and centrality in protein networks. Nature, 411 (6833): 41C42, 2001.
-
(2001)
Nature
, vol.411
, Issue.6833
-
-
Jeong, H.1
Mason, S.P.2
Barabasi, A.L.3
Oltvai, Z.N.4
-
6
-
-
84865730611
-
A set of measures of centrality based on betweenness
-
Freeman L.C. A Set of Measures of Centrality Based on Betweenness. Sociometry 40: 35-41, 1977.
-
(1977)
Sociometry
, vol.40
, pp. 35-41
-
-
Freeman, L.C.1
-
9
-
-
84936824655
-
Power and centrality: A family of measures
-
Bonacich P. Power and Centrality: A Family of Measures. Am. J. Sociology 92:1170-1182, 1987.
-
(1987)
Am. J. Sociology
, vol.92
, pp. 1170-1182
-
-
Bonacich, P.1
-
10
-
-
45249126392
-
Rethinking centrality: Methods and examples
-
Stevenson K. and Zelen M. Rethinking Centrality: Methods and Examples. Social Networks 11: 1-37, 1989.
-
(1989)
Social Networks
, vol.11
, pp. 1-37
-
-
Stevenson, K.1
Zelen, M.2
-
11
-
-
84861492539
-
Identification of essential proteins based on edge clustering coefficient
-
Wang J, Li M, Wang H, Pan Y. Identification of Essential Proteins Based on Edge Clustering Coefficient. IEEE/ACM Transactions on Computational Biology and Bioinformatics 9(4):1070-1080, 2012.
-
(2012)
IEEE/ACM Transactions on Computational Biology and Bioinformatics
, vol.9
, Issue.4
, pp. 1070-1080
-
-
Wang, J.1
Li, M.2
Wang, H.3
Pan, Y.4
-
12
-
-
2442477788
-
Genomic analy-sis of essentiality within protein networks
-
Yu H., Greenbaum D., Xin Lu H., Zhu X., Gerstein M. Genomic analy-sis of essentiality within protein networks. Trends in Genetics 20(6):227C231, 2004.
-
(2004)
Trends in Genetics
, vol.20
, Issue.6
-
-
Yu, H.1
Greenbaum, D.2
Xin Lu, H.3
Zhu, X.4
Gerstein, M.5
-
13
-
-
16344381521
-
Comparative genomics of centrality and essentiality in three eukaryotic protein interaction networks
-
(December)
-
Hahn M.W., Kern A.D. Comparative genomics of centrality and essentiality in three eukaryotic protein interaction networks. Molecular Biology and Evolution 22(December (4)):803C806, 2004.
-
(2004)
Molecular Biology and Evolution
, vol.22
, Issue.4
-
-
Hahn, M.W.1
Kern, A.D.2
-
14
-
-
0036916852
-
Interaction and domain networks of yeast
-
Wuchty S. Interaction and domain networks of yeast. Proteomics 2:1715C1723, 2002.
-
(2002)
Proteomics
, vol.2
-
-
Wuchty, S.1
-
15
-
-
33745712594
-
Why do hubs tend to be essential in protein networks?
-
He X.L., Zhang J.Z. Why do hubs tend to be essential in protein networks? PLoS Genetics 2(6):0826C0834, 2006.
-
(2006)
PLoS Genetics
, vol.2
, Issue.6
-
-
He, X.L.1
Zhang, J.Z.2
-
16
-
-
50949092459
-
Why do hubs in the yeast protein interaction network tend to be essential: Reexamining the connection between the network topology and essentiality
-
Zotenko E., Mestre J., OLeary D.P., Przytycka T.M. Why do hubs in the yeast protein interaction network tend to be essential: reexamining the connection between the network topology and essentiality. PLoS Computational Biology 4(8):1C16, 2008.
-
(2008)
PLoS Computational Biology
, vol.4
, Issue.8
-
-
Zotenko, E.1
Mestre, J.2
O'Leary, D.P.3
Przytycka, T.M.4
-
17
-
-
33746631391
-
Evolutionary and physiological importance of hub proteins
-
doi:10.1371/journal.pcbi.0020088
-
Batada N.N., Hurst L.D., Tyers M. Evolutionary and physiological importance of hub proteins. PLoS Computational Biology 2(7): e88, doi:10.1371/journal.pcbi.0020088, 2006.
-
(2006)
PLoS Computational Biology
, vol.2
, Issue.7
-
-
Batada, N.N.1
Hurst, L.D.2
Tyers, M.3
-
18
-
-
65449152586
-
Identifying hubs in protein interaction networks
-
Vallabhajosyula R., Chakravarti D., Lutfeali S., Ray A., Raval A. Identifying hubs in protein interaction networks. Plos One 4(4):1C10, 2009.
-
(2009)
Plos One
, vol.4
, Issue.4
-
-
Vallabhajosyula, R.1
Chakravarti, D.2
Lutfeali, S.3
Ray, A.4
Raval, A.5
-
20
-
-
84877580262
-
Structure and dynamics of molecular networks: A novel paradigm of drug discovery
-
Peter Csermely, Tams Korcsmros, Huba J.M. Kiss, Gbor London and Ruth Nussinov. Structure and dynamics of molecular networks: A novel paradigm of drug discovery. Pharmacology and Therapeutics 138:333C408, 2013.
-
(2013)
Pharmacology and Therapeutics
, vol.138
-
-
Csermely, P.1
Korcsmros, T.2
Kiss, H.J.M.3
London, G.4
Nussinov, R.5
-
21
-
-
84894542051
-
Computational approaches to predicting essential proteins: A survey
-
Wang J, Peng W, Wu FX. Computational approaches to predicting essential proteins: A survey. PROTEOMICS-Clinical Applications 00:1C12, 2012.
-
(2012)
PROTEOMICS-Clinical Applications
, vol.0
-
-
Wang, J.1
Peng, W.2
Wu, F.X.3
-
22
-
-
84876375322
-
Prediction of essential proteins using topological properties in GO-pruned PPI network based on machine learning methods
-
Wooyoung Kim. Prediction of essential proteins using topological properties in GO-pruned PPI network based on machine learning methods. Tsinghua Science and Technology 645-658, 2012.
-
(2012)
Tsinghua Science and Technology
, pp. 645-658
-
-
Kim, W.1
-
24
-
-
84867613437
-
Iteration method for predicting essential proteins based on orthology and protein-protein interaction networks
-
Peng W., Wang J., Wang W., Liu Q. et al. Iteration method for predicting essential proteins based on orthology and protein-protein interaction networks. BMC Syst. Biol. 6:87, 2012.
-
(2012)
BMC Syst. Biol.
, vol.6
, pp. 87
-
-
Peng, W.1
Wang, J.2
Wang, W.3
Liu, Q.4
-
27
-
-
34547787599
-
A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality
-
Hart GT, Lee I, Marcotte E. A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality. BMC Bioinformatics 8(1): 236, 2007.
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.1
, pp. 236
-
-
Hart, G.T.1
Lee, I.2
Marcotte, E.3
-
28
-
-
84862787765
-
A new essential protein discovery method based on the integration of protein-protein interaction and gene expression data
-
Li M, Zhang H, Wang J, Pan Y. A new essential protein discovery method based on the integration of protein-protein interaction and gene expression data. BMC Syst Biol 2012, 6:15-23, 2012.
-
(2012)
BMC Syst Biol 2012
, vol.6
, pp. 15-23
-
-
Li, M.1
Zhang, H.2
Wang, J.3
Pan, Y.4
-
29
-
-
77953785685
-
Essential proteins discovery from weighted protein interaction networks
-
Li M, Wang J, Wang H, Pan Y. Essential Proteins Discovery from Weighted Protein Interaction Networks. ISBRA2010, LNBI 2010 6053:89-100, 2010.
-
(2010)
ISBRA2010, LNBI 2010
, vol.6053
, pp. 89-100
-
-
Li, M.1
Wang, J.2
Wang, H.3
Pan, Y.4
-
30
-
-
13844314048
-
Conserved patterns of protein interaction in multiple species
-
Sharan R, Suthram S, Kelley R M, et al. Conserved patterns of protein interaction in multiple species. PNAS 102(6): 1974-1979, 2005.
-
(2005)
PNAS
, vol.102
, Issue.6
, pp. 1974-1979
-
-
Sharan, R.1
Suthram, S.2
Kelley, R.M.3
-
32
-
-
0033971642
-
DIP: The database of interacting proteins
-
Xenarios I, Rice D W, Salwinski L, et al. DIP: the Database of Interacting Proteins. Nucleic Acids Research 28(1): 289 291, 2000.
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.1
, pp. 289-291
-
-
Xenarios, I.1
Rice, D.W.2
Salwinski, L.3
-
33
-
-
33646347364
-
QPath: A method for querying pathways in a protein-protein interaction network
-
Shlomi T, Segal D, Ruppin E, et al. QPath: a method for querying pathways in a protein-protein interaction network. BMC Bioinformatics 7: 199, 2006.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 199
-
-
Shlomi, T.1
Segal, D.2
Ruppin, E.3
-
34
-
-
33846608310
-
Transcriptional regulation of protein complexes within and across species
-
Tan K, Shlomi T, Feizi H, et al. Transcriptional regulation of protein complexes within and across species. PNAS 104(4): 1283-1288, 2007.
-
(2007)
PNAS
, vol.104
, Issue.4
, pp. 1283-1288
-
-
Tan, K.1
Shlomi, T.2
Feizi, H.3
-
35
-
-
33644875537
-
MIPS: Analysis and annotation of proteins from whole genomes in 2005
-
Mewes HW, Frishman D, Mayer KF, Munsterkotter M, Noubibou O, et al. MIPS: analysis and annotation of proteins from whole genomes in 2005. Nucleic Acids Res 34: D169-172, 2006.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Mewes, H.W.1
Frishman, D.2
Mayer, K.F.3
Munsterkotter, M.4
Noubibou, O.5
-
36
-
-
0031858914
-
SGD: Saccharomyces genome database
-
Cherry JM, Adler C, Ball C, Chervitz SA, Dwight SS, et al. SGD: Saccharomyces Genome Database. Nucleic Acids Res 26: 73-79, 1998.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 73-79
-
-
Cherry, J.M.1
Adler, C.2
Ball, C.3
Chervitz, S.A.4
Dwight, S.S.5
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