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Volumn , Issue , 2013, Pages 103-108

Prioritization of candidate genes based on disease similarity and protein's proximity in PPI networks

Author keywords

disease similarity; prioritizing disease genes; protein proximity; protein protein interaction network

Indexed keywords


EID: 84894515342     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/BIBM.2013.6732471     Document Type: Conference Paper
Times cited : (7)

References (25)
  • 1
    • 0037373275 scopus 로고    scopus 로고
    • Discovering genotypes underlying human phenotypes: Past successes for mendelian disease, future approaches for complex disease
    • D. Botstein, N. Risch, "Discovering genotypes underlying human phenotypes: past successes for mendelian disease, future approaches for complex disease", nature genetics supplement, vol. 33, 2003.
    • (2003) Nature Genetics Supplement , vol.33
    • Botstein, D.1    Risch, N.2
  • 4
    • 0035733690 scopus 로고    scopus 로고
    • Correlation between transcriptome and interactome mapping data from saccharomyces cerevisiae
    • H. Ge, Z. Liu, G. M. Church, M. Vidal, "Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae", Nature Genetics, vol. 29, 2001, pp. 482-6.
    • (2001) Nature Genetics , vol.29 , pp. 482-486
    • Ge, H.1    Liu, Z.2    Church, G.M.3    Vidal, M.4
  • 5
    • 0035445792 scopus 로고    scopus 로고
    • A relationship between gene expression and protein interactions on the proteome scale: Analysis of the bacteriophage T7 and the yeast saccharomyces cerevisiae
    • A. Grigoriev, "A relationship between gene expression and protein interactions on the proteome scale: analysis of the bacteriophage T7 and the yeast Saccharomyces cerevisiae", Nucleic Acids Reearch., vol. 29, 2001, pp. 3513-9.
    • (2001) Nucleic Acids Reearch. , vol.29 , pp. 3513-3519
    • Grigoriev, A.1
  • 6
    • 62849126285 scopus 로고    scopus 로고
    • Disease candidate gene identification and prioritization using protein interaction networks
    • J. Chen, B. Aronow, A. Jegga, "Disease candidate gene identification and prioritization using protein interaction networks", BMC Bioinformatics, vol. 10, 2009, pp. 73.
    • (2009) BMC Bioinformatics , vol.10 , pp. 73
    • Chen, J.1    Aronow, B.2    Jegga, A.3
  • 7
    • 33747035889 scopus 로고    scopus 로고
    • Predicting disease genes using protein-protein interactions
    • M. Oti, B. Snel, M. A. Huynen, H. G. Brunner, "Predicting disease genes using protein-protein interactions", Journal of Medical Genetics, vol. 43, 2006, pp. 691-698.
    • (2006) Journal of Medical Genetics , vol.43 , pp. 691-698
    • Oti, M.1    Snel, B.2    Huynen, M.A.3    Brunner, H.G.4
  • 8
    • 43249114206 scopus 로고    scopus 로고
    • Network-based global inference of human disease genes
    • Article number 189
    • X. Wu, R. Jiang, M. Q. Zhang and S. Li, "Network-based global inference of human disease genes", Molecular Systems Biology, vol. 4, Article number 189.
    • Molecular Systems Biology , vol.4
    • Wu, X.1    Jiang, R.2    Zhang, M.Q.3    Li, S.4
  • 12
    • 80955159942 scopus 로고    scopus 로고
    • Vavien: An algorithm for prioritizing candidate disease genes based on topological similarity of proteins in interaction networks
    • S. Erten, G. Bebek, M. Koyutu, "Vavien: An Algorithm for Prioritizing Candidate Disease Genes Based on Topological Similarity of Proteins in Interaction Networks", Journal of Computational Biology, 2011.
    • (2011) Journal of Computational Biology
    • Erten, S.1    Bebek, G.2    Koyutu, M.3
  • 13
    • 38849203273 scopus 로고    scopus 로고
    • TOM: Enhancement and extension of a tool suite for in silico approaches to multi genic hereditary disorders
    • D. Masotti, C. Nardini, S. Rossi, E. Bonora, G. Romeo, S. Volinia, L. Benini, "TOM: enhancement and extension of a tool suite for in silico approaches to multi genic hereditary disorders", Bioinformatics, vol. 24(3), 2008, pp. 428-429.
    • (2008) Bioinformatics , vol.24 , Issue.3 , pp. 428-429
    • Masotti, D.1    Nardini, C.2    Rossi, S.3    Bonora, E.4    Romeo, G.5    Volinia, S.6    Benini, L.7
  • 14
    • 36849004088 scopus 로고    scopus 로고
    • PathFinder: Mining signal transduction pathway segments from protein-protein interaction networks
    • G. Bebek, J. Yang, "PathFinder: mining signal transduction pathway segments from protein-protein interaction networks", BMC Bioinformatics, vol. 8, 2007, pp. 335.
    • (2007) BMC Bioinformatics , vol.8 , pp. 335
    • Bebek, G.1    Yang, J.2
  • 15
    • 69949101944 scopus 로고    scopus 로고
    • A top-down approach to enhance the power of predicting human protein subcellular localization: Hum-mPLoc 2.0
    • H. Shen, K. Chou, "A top-down approach to enhance the power of predicting human protein subcellular localization: Hum-mPLoc 2.0", Analytical Biochemistry, vol. 394, 2009, pp. 269-274.
    • (2009) Analytical Biochemistry , vol.394 , pp. 269-274
    • Shen, H.1    Chou, K.2
  • 19
    • 0036196320 scopus 로고    scopus 로고
    • NF-κB activates prostate-specific antigen expression and is upregulated in androgen-independent prostate cancer
    • C. D. Chen, C. L. Sawyers, "NF-κB Activates Prostate-Specific Antigen Expression and Is Upregulated in Androgen-Independent Prostate Cancer", Molecular and Cellular Biology, vol. 22(8), 2002, pp. 2862-2870.
    • (2002) Molecular and Cellular Biology , vol.22 , Issue.8 , pp. 2862-2870
    • Chen, C.D.1    Sawyers, C.L.2
  • 21
    • 84866745036 scopus 로고    scopus 로고
    • Are cell cycle and apoptosis genes associated with prostate cancer risk in North Indian population? Urologic oncology
    • R. K. Mandal, R.D. Mittal, "Are cell cycle and apoptosis genes associated with prostate cancer risk in North Indian population? Urologic Oncology", Seminars and Original Investigations, vol. 30(5), 2012, pp. 555-561.
    • (2012) Seminars and Original Investigations , vol.30 , Issue.5 , pp. 555-561
    • Mandal, R.K.1    Mittal, R.D.2
  • 24
    • 20444418183 scopus 로고    scopus 로고
    • Association analysis of the variant in the regulatory subunit of phosphoinositide 3- kinase (p85α) with Type 2 diabetes mellitus and hypertension in the Chinese Han population
    • S. Chen, W. Yan, J. Huang, D. Ge, Z. Yao, D. Gu, "Association analysis of the variant in the regulatory subunit of phosphoinositide 3- kinase (p85α) with Type 2 diabetes mellitus and hypertension in the Chinese Han population", Diabetic Medicine, vol. 22(6), 2005, pp. 737-743.
    • (2005) Diabetic Medicine , vol.22 , Issue.6 , pp. 737-743
    • Chen, S.1    Yan, W.2    Huang, J.3    Ge, D.4    Yao, Z.5    Gu, D.6
  • 25
    • 79952039609 scopus 로고    scopus 로고
    • Association between polymorphisms in RAPGEF1, TP53, NRF1 and type 2 diabetes in Chinese Han population
    • L. Qu, B. He, Y. Pan, Y. Xu, C. Zhu, Z. Tang, Q. Bao, F. Tian, S. Wang, "Association between polymorphisms in RAPGEF1, TP53, NRF1 and type 2 diabetes in Chinese Han population", Diabetes Research and Clinical Practice, vol. 91(2), 2011, pp. 171-176.
    • (2011) Diabetes Research and Clinical Practice , vol.91 , Issue.2 , pp. 171-176
    • Qu, L.1    He, B.2    Pan, Y.3    Xu, Y.4    Zhu, C.5    Tang, Z.6    Bao, Q.7    Tian, F.8    Wang, S.9


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.