Multi-resolution correlative focused ion beam scanning electron microscopy: Applications to cell biology

Journal of Structural Biology

Volumn 185, Issue 3, 2014, Pages 278-284

  Narayan, Kedar ^a   Danielson, Cindy M ^b   Lagarec, Ken ^c   Lowekamp, Bradley C ^d   Coffman, Phil ^a   Laquerre, Alexandre ^c   Phaneuf, Michael W ^c   Hope, Thomas J ^b   Subramaniam, Sriram ^a  

^a NATIONAL CANCER INSTITUTE   (United States)

^b NORTHWESTERN UNIVERSITY   (United States)

^c Fibics Incorporated   (Canada)

^d NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

3D imaging of bacteria; Correlative microscopy; FIB SEM; HIV 1 core; Ion abrasion scanning electron microscopy; Three dimensional electron microscopy; Tomography

Indexed keywords

3D IMAGING OF BACTERIA; CORRELATIVE MICROSCOPY; FIB-SEM; HIV-1 CORE; ION ABRASION SCANNING ELECTRON MICROSCOPY; THREE-DIMENSIONAL ELECTRON MICROSCOPY; TOMOGRAPHY;

CELL BIOLOGY; CELL LINE; HUMANS; MICROSCOPY, ELECTRON, SCANNING; MICROSCOPY, FLUORESCENCE;

EID: 84894488054     PISSN: 10478477     EISSN: 10958657     Source Type: Journal    
DOI: 10.1016/j.jsb.2013.11.008     Document Type: Article

References (18)

1. Anderson J.L., Campbell E.M., Wu X., Vandegraaff N., Engelman A., Hope T.J. Proteasome inhibition reveals that a functional preintegration complex intermediate can be generated during restriction by diverse TRIM5 proteins. J. Virol. 2006, 80:9754-9760.
2. Briggman K.L., Helmstaedter M., Denk W. Wiring specificity in the direction-selectivity circuit of the retina. Nature 2011, 471:183-188.
3. Campbell E.M., Dodding M.P., Yap M.W., Wu X., Gallois-Montbrun S., Malim M.H., Stoye J.P., Hope T.J. TRIM5 alpha cytoplasmic bodies are highly dynamic structures. Mol. Biol. Cell 2007, 18:2102-2111.
4. Denk W., Horstmann H. Serial block-face scanning electron microscopy to reconstruct three-dimensional tissue nanostructure. PLoS Biol. 2004, 2:e329.
5. Drobne D. 3D imaging of cells and tissues by focused ion beam/scanning electron microscopy (FIB/SEM). Methods Mol. Biol. 2013, 950:275-292.
6. Drobne D., Milani M., Leser V., Tatti F., Zrimec A., Znidarsic N., Kostanjsek R., Strus J. Imaging of intracellular spherical lamellar structures and tissue gross morphology by a focused ion beam/scanning electron microscope (FIB/SEM). Ultramicroscopy 2008, 108:663-670.
7. Fedorov A., Beichel R., Kalpathy-Cramer J., Finet J., Fillion-Robin J.C., Pujol S., Bauer C., Jennings D., Fennessy F., Sonka M., Buatti J., Aylward S., Miller J.V., Pieper S., Kikinis R. 3D slicer as an image computing platform for the quantitative imaging network. Magn. Reson. Imaging 2012, 30:1323-1341.
8. Ganser-Pornillos B.K., Chandrasekaran V., Pornillos O., Sodroski J.G., Sundquist W.I., Yeager M. Hexagonal assembly of a restricting TRIM5alpha protein. Proc. Natl. Acad. Sci. USA 2011, 108:534-539.
9. Heymann J.A., Hayles M., Gestmann I., Giannuzzi L.A., Lich B., Subramaniam S. Site-specific 3D imaging of cells and tissues with a dual beam microscope. J. Struct. Biol. 2006, 155:63-73.
10. Heymann J.A., Shi D., Kim S., Bliss D., Milne J.L., Subramaniam S. 3D imaging of mammalian cells with ion-abrasion scanning electron microscopy. J. Struct. Biol. 2009, 166:1-7.
11. Hildebrand M., Kim S., Shi D., Scott K., Subramaniam S. 3D imaging of diatoms with ion-abrasion scanning electron microscopy. J. Struct. Biol. 2009, 166:316-328.
12. Knott G., Marchman H., Wall D., Lich B. Serial section scanning electron microscopy of adult brain tissue using focused ion beam milling. J. Neurosci. 2008, 28:2959-2964.
13. Kremer J.R., Mastronarde D.N., McIntosh J.R. Computer visualization of three-dimensional image data using IMOD. J. Struct. Biol. 1996, 116:71-76.
14. Murphy G.E., Narayan K., Lowekamp B.C., Hartnell L.M., Heymann J.A., Fu J., Subramaniam S. Correlative 3D imaging of whole mammalian cells with light and electron microscopy. J. Struct. Biol. 2011, 176:268-278.
15. Perron M.J., Stremlau M., Song B., Ulm W., Mulligan R.C., Sodroski J. TRIM5alpha mediates the postentry block to N-tropic murine leukemia viruses in human cells. Proc. Natl. Acad. Sci. USA 2004, 101:11827-11832.
16. Schroeder J.L., Bakalar M., Pohida T.J., Balaban R.S. Rapid overlapping-volume acquisition and reconstruction (ROVAR): automated 3D tiling for high-resolution, large field-of-view optical microscopy. J. Microsc. 2011, 243:103-110.
17. Shu X., Lev-Ram V., Deerinck T.J., Qi Y., Ramko E.B., Davidson M.W., Jin Y., Ellisman M.H., Tsien R.Y. A genetically encoded tag for correlated light and electron microscopy of intact cells, tissues, and organisms. PLoS Biol. 2011, 9:e1001041.
18. Stremlau M., Owens C.M., Perron M.J., Kiessling M., Autissier P., Sodroski J. The cytoplasmic body component TRIM5alpha restricts HIV-1 infection in old world monkeys. Nature 2004, 427:848-853.