Rapid overlapping-volume acquisition and reconstruction (ROVAR): Automated 3D tiling for high-resolution, large field-of-view optical microscopy

Journal of Microscopy

Volumn 243, Issue 1, 2011, Pages 103-110

  Schroeder, J L ^a   Bakalar, M ^b   Pohida, T J ^b   Balaban, Robert S ^a  

^a National Institutes of Health   (United States)

^b NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

3D; Automation; In vivo; Multiphoton; Stitching; Volume

Indexed keywords

FLUORESCENCE; IMAGE ACQUISITION; IMAGE RECONSTRUCTION; MICROSCOPES; TISSUE;

3D; FIELD OF VIEWS; HIGH RESOLUTION; IMAGE STACKS; IN-VIVO; LARGE FIELD OF VIEWS; MULTIPHOTONS; STITCHING; TISSUE SURFACE; VOLUME;

AUTOMATION;

ANIMAL EXPERIMENT; ARTICLE; IMAGING SYSTEM; IN VIVO STUDY; MICROSCOPY; MOUSE; MULTIPHOTON MICROSCOPY; NONHUMAN; OPTICAL RESOLUTION; PRIORITY JOURNAL; RAPID OVERLAPPING VOLUME ACQUISITION AND RECONSTRUCTION; SURFACE PROPERTY; THREE DIMENSIONAL IMAGING;

EID: 79958820927     PISSN: 00222720     EISSN: 13652818     Source Type: Journal    
DOI: 10.1111/j.1365-2818.2011.03490.x     Document Type: Article

References (12)

1. Combs, C.A., Smirnov, A., Chess, D., et al. (2011) Optimizing multiphoton fluorescence microscopy light collection from living tissue by noncontact total emission detection (epiTED). J. Microsc. 241, 153-161.
2. Debarre, D., Botcherby, E.J., Watanabe, T., Srinivas, S., Booth, M.J. & Wilson, T. (2009) Image-based adaptive optics for two-photon microscopy. Opt. Lett. 34, 2495-2497.
3. Denk, W., Strickler, J.H. & Webb, W.W. (1990) Two-photon laser scanning fluorescence microscopy. Science 248, 73-76.
4. Emmenlauer, M., Ronneberger, O., Ponti, A., et al. (2009) XuvTools: free, fast and reliable stitching of large 3D datasets. J. Microsc. 233, 42-60.
5. Jobsis, P.D., Rothstein, E.C. & Balaban, R.S. (2007) Limited utility of acetoxymethyl (AM)-based intracellular delivery systems, in vivo: interference by extracellular esterases. J. Microsc. 226, 74-81.
6. Losavio, B.E., Liang, Y., Santamaria-Pang, A., Kakadiaris, I.A., Colbert, C.M. & Saggau, P. (2008) Live neuron morphology automatically reconstructed from multiphoton and confocal imaging data. J. Neurophysiol. 100, 2422-2429.
7. McMullen, J.D. & Zipfel, W.R. (2010) A multiphoton objective design with incorporated beam splitter for enhanced fluorescence collection. Opt. Exp. 18, 5390-5398.
8. Preibisch, S., Saalfeld, S. & Tomancak, P. (2009) Globally optimal stitching of tiled 3D microscopic image acquisitions. Bioinformatics 25, 1463-1465.
9. Price, D.L., Chow, S.K., Hakozaki, H., Phung, V., Smarr, B., Peltier, S., Martone, M.E. & Ellisman, M.H.. (2006) Automated microscopy system for mosaic acquisition and processing. J. Microsc. 222, 76-84.
10. Rothstein, E.C., Nauman, M., Chesnick, S. & Balaban, R.S. (2006) Multi-photon excitation microscopy in intact animals. J. Microsc. 222, 58-64.
11. Schroeder, J.L., Luger-Hamer, M., Pursley, R., Pohida, T., Chefd'hotel, C., Kellman, P. & Balaban, R.S. (2010) Subcellular motion compensation for minimally invasive microscopy, in vivo: evidence for oxygen gradients in resting muscle. Circ. Res. 106, 1129-1133.
12. Sherman, L., Ye, J.Y., Albert, O. & Norris, T.B. (2002) Adaptive correction of depth-induced aberrations in multiphoton scanning microscopy using a deformable mirror. J. Microsc. 206, 65-71.