Nucleic acid diagnostic biosensors

Recognition Receptors in Biosensors

Volumn , Issue , 2010, Pages 343-363

  Glynn, Barry ^a   O'Connor, Louise ^a  

^a NATIONAL UNIVERSITY OF IRELAND   (Ireland)

Author keywords

Biosensors; Microbiology; Nucleic acid diagnostics; PCR

Indexed keywords

EID: 84894449144     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-1-4419-0919-0_8     Document Type: Chapter

References (52)

1. Ahn S, Walt DR (2005) Detection of Salmonella spp. Using microsphere-based, fiber-optic DNA microarrays. Anal Chem 77:5041-5047
2. Anthony RM, Schuitema AR, Oskam L, Klatser PR (2005) Direct detection of Staphylococcus aureus mRNA using a flow through microarray. J Microbiol Methods 60:47-54
3. Baeumner AJ (2003) Biosensors for environmental pollutants and food contaminants. Anal Bioanal Chem 377:434-445
4. Baeumner AJ, Jones C, Wong CY, Price A (2004) A generic sandwich-Type biosensor with nanomolar detection limits. Anal Bioanal Chem 378:1587-1593
5. Borucki MK, Reynolds J, Call DR, Ward TJ, Page B, Kadushin J (2005) Suspension microarray with dendrimer signal amplification allows direct and high-Throughput subtyping of Listeria monocytogenes from genomic DNA. J Clin Microbiol 43:3255-3259
6. De-los-Santos-Alvarez P, De-los-Santos-Alvarez N, Lobo-Castanon MJ, Miranda-Ordieres AJ, Tunon-Blanco P (2006) Amplified label-free electrocatalytic detection of DNA in the presence of calcium ions. Biosens Bioelectron 21:1507-1512
7. Feriotto G, Borgatti M, Mischiati C, Bianchi N, Gambari R (2002) Biosensor technology and surface plasmon resonance for real-Time detection of genetically modified roundup ready soybean gene sequences. J Agric Food Chem 50:955-962
8. Fitzmaurice J, Glennon M, Duffy G, Sheridan JJ, Carroll C, Maher M (2004) Application of realtime PCR and RT-PCR assays for the detection and quantitation of vt1 and vt2 toxin genes in E. coli O157:H7. Mol Cell Probes 18:123-132
9. Fuentes M, Mateo C, Rodriguez A, Casqueiro M, Tercero JC, Riese HH, Fernandez-Lafuente R, Guisan JM (2006) Detecting minimal traces of DNA using DNA covalently attached to superparamagnetic nanoparticles and direct PCR-ELISA. Biosens Bioelectron 21:1574-1580
10. Fung DY (2002) Predictions for rapid methods and automation in food microbiology. J AOAC Int 85:1000-1002
11. Glynn B, Lacey K, Reilly J, Barry T, Smith T, MaherM(2007) Quantification of bacterial tmRNA using in vitro transcribed RNA standards and two-step qRT-PCR. Res J Biol Sci 2:564-570
12. Grennan B, O'Sullivan NA, Fallon R, Carroll C, Smith T, Glennon M, Maher M (2001) PCRELISAs for the detection of Campylobacter jejuni and Campylobacter coli in poultry samples. Biotechniques 30:602-606 608-610
13. Guan JG, Miao YQ, Zhang QJ (2004) Impedimetric biosensors. J Biosci Bioeng 97:219-226
14. Hoa XD, Kirk AG, Tabrizian M (2007) Towards integrated and sensitive surface plasmon resonance biosensors: A review of recent progress. Biosens Bioelectron 23:151-160
15. Iqbal SS, Mayo MW, Bruno JG, Bronk BV, Batt CA, Chambers JP (2000) A review of molecular recognition technologies for detection of biological threat agents. Biosens Bioelectron 15:549-578
16. Ivnitski D, Abdel-Hamid I, Atanasov P, Wilkins E, Stricker S (2000) Application of electrochemical biosensors for detection of food pathogenic bacteria. Electroanalysis 12:317-325
17. Kwakye S, Goral VN, Baeumner AJ (2006) Electrochemical microfluidic biosensor for nucleic acid detection with integrated minipotentiostat. Biosens Bioelectron 21:2217-2223
18. Lazcka O, Del Campo FJ, Munoz FX (2007) Pathogen detection: A perspective of traditional methods and biosensors. Biosens Bioelectron 22:1205-1217
19. Lazerges M, Perrot H, Antoine E, Defontaine A, Compere C (2006) Oligonucleotide quartz crystal microbalance sensor for the microalgae Alexandrium minutum (Dinophyceae). Biosens Bioelectron 21:1355-1358
20. Lee SY, Bailey SC, Apirion D (1978) Small stable RNAs from Escherichia coli: Evidence for the existence of new molecules and for a new ribonucleoprotein particle containing 6s RNA. J Bacteriol 133:1015-1023
21. Maher M, Finnegan C, Collins E, Ward B, Carroll C, Cormican M (2003) Evaluation of culture methods and a DNA probe-based PCR assay for detection of Campylobacter species in clinical specimens of feces. J Clin Microbiol 41:2980-2986
22. Mannelli I, Minunni M, Tombelli S, Wang R, Michela Spiriti M, Mascini M (2005) Direct immobilisation of DNA probes for the development of affinity biosensors. Bioelectrochemistry 66:129-138
23. Mao X, Yang L, Su XL, Li Y (2006) A nanoparticle amplification based quartz crystal microbalance DNA sensor for detection of Escherichia coli O157:H7. Biosens Bioelectron 21:1178-1185
24. Mascini M, Tombelli S, Palchetti I (2005) New trends in nucleic acid based biosensors: University of Florence (Italy), 25-28 October 2003. Bioelectrochemistry 67:131-133
25. Mullis KB, Faloona FA (1987) Specific synthesis of DNA in vitro via a polymerase-catalyzed chain reaction. Methods Enzymol 155:335-350
26. Nelson BP, Grimsrud TE, Liles MR, Goodman RM, Corn RM (2001) Surface plasmon resonance imaging measurements of DNA and RNA hybridization adsorption onto DNA microarrays. Anal Chem 73:1-7
27. O'Connor L (2003) Detection of Listeria monocytogenes using a PCR/DNA probe assay. Methods Mol Biol 216:185-192
28. O'Connor L, Joy J, Kane M, Smith T, Maher M (2000) Rapid polymerase chain reaction/DNA probe membrane-based assay for the detection of Listeria and Listeria monocytogenes in food. J Food Prot 63:337-342
29. O'Connor L, Lahiff S, Casey F, Glennon M, Cormican M, Maher M (2005) Quantification of als1 gene expression in Candida albicans biofilms by RT-PCR using hybridisation probes on the Lightcycler. Mol Cell Probes 19:153-162
30. Peng H, Soeller C, Cannell MB, Bowmaker GA, Cooney RP, Travas-Sejdic J (2006) Electrochemical detection of DNA hybridization amplified by nanoparticles. Biosens Bioelectron 21:1727-1736
31. Pfaller MA (2001) Molecular approaches to diagnosing and managing infectious diseases: Practicality and costs. Emerg Infect Dis 7:312-318
32. Rand AG, Ye JM, Brown CW, Letcher SV (2002) Optical biosensors for food pathogen detection. Food Technology 56:32-39
33. Sachse K, Hotzel H, Slickers P, Ellinger T, Ehricht R (2005) DNA microarray-based detection and identification of Chlamydia and Chlamydophila spp. Mol Cell Probes 19:41-50
34. Schonhuber W, Le Bourhis G, Tremblay J, Amann R, Kulakauskas S (2001) Utilization of tmRNA sequences for bacterial identification. BMC Microbiol 1:20
35. Small J, Call DR, Brockman FJ, Straub TM, Chandler DP (2001) Direct detection of 16s rRNA in soil extracts by using oligonucleotide microarrays. Appl Environ Microbiol 67:4708-4716
36. Southern EM (1975) Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol 98:503-517
37. Spadavecchia J, Manera MG, Quaranta F, Siciliano P, Rella R (2005) Surface plamon resonance imaging of DNA based biosensors for potential applications in food analysis. Biosens Bioelectron 21:894-900
38. Storhoff JJ, Marla SS, Bao P, Hagenow S, Mehta H, Lucas A, Garimella V, Patno T, Buckingham W, Cork W, Muller UR (2004) Gold nanoparticle-based detection of genomic DNA targets on microarrays using a novel optical detection system. Biosens Bioelectron 19:875-883
39. Straub TM, Dockendorff BP, Quinonez-Diaz MD, Valdez CO, Shutthanandan JI, Tarasevich BJ, Grate JW, Bruckner-Lea CJ (2005) Automated methods for multiplexed pathogen detection. J Microbiol Methods 62:303-316
40. Su XL, Li Y (2004) A self-Assembled monolayer-based piezoelectric immunosensor for rapid detection of Escherichia coli O157:H7. Biosens Bioelectron 19:563-574
41. Templeton KE, Scheltinga SA, van der Zee A, Diederen BM, van Kruijssen AM, Goossens H, Kuijper E, Claas EC (2003) Evaluation of real-Time PCR for detection of and discrimination between Bordetella pertussis, Bordetella parapertussis, and Bordetella holmesii for clinical diagnosis. J Clin Microbiol 41:4121-4126
42. Todd EC, Szabo RA, MacKenzie JM, Martin A, Rahn K, Gyles C, Gao A, Alves D, Yee AJ (1999) Application of a DNA hybridization-hydrophobic-grid membrane filter method for detection and isolation of verotoxigenic Escherichia coli. Appl Environ Microbiol 65:4775-4780
43. Tortoli E, Mariottini A, Mazzarelli G (2003) Evaluation of Inno-LIPA Mycobacteria V2: Improved reverse hybridization multiple DNA probe assay for Mycobacterial identification. J Clin Microbiol 41:4418-4420
44. Updike SJ, Hicks GP (1967) The enzyme electrode. Nature 214:986-988
45. Van Der Pol B, Quinn TC, Gaydos CA, Crotchfelt K, Schachter J, Moncada J, Jungkind D, Martin DH, Turner B, Peyton C, Jones RB (2000) Multicenter evaluation of the Amplicor and automated Cobas Amplicor CT/NG tests for detection of Chlamydia trachomatis. J Clin Microbiol 38:1105-1112
46. Wang J, Fernandes JR, Kubota LT (1998) Polishable and renewable DNA hybridization biosensors. Anal Chem 70:3699-3702
47. Wang R, Tombelli S, Minunni M, Spiriti MM, Mascini M (2004) Immobilisation of DNA probes for the development of SPR-based sensing. Biosens Bioelectron 20:967-974
48. Wang R, Zhang L, Feng Y, Ning C, Jian F, Xiao L, Zhao J,Wang Y (2008) Molecular characterization of a new genotype of Cryptosporidium from American minks (Mustela vison) in China. Vet Parasitol 154:162-166
49. Williams KP (2002) The tmRNA website: Invasion by an intron. Nucleic Acids Res 30:179-182
50. Wilson WJ, Strout CL, DeSantis TZ, Stilwell JL, Carrano AV, Andersen GL (2002) Sequencespecific identification of 18 pathogenic microorganisms using microarray technology. Mol Cell Probes 16:119-127
51. Wu VC, Chen SH, Lin CS (2007) Real-Time detection of Escherichia coli O157:H7 sequences using a circulating-flow system of quartz crystal microbalance. Biosens Bioelectron 22: 2967-2975
52. Yao G, Fang X, Yokota H, Yanagida T, Tan W (2003) Monitoring molecular beacon DNA probe hybridization at the single-molecule level. Chemistry 9:5686-5692