메뉴 건너뛰기




Volumn 8, Issue 11, 2013, Pages

Identification of methanogenic archaea in the hyporheic sediment of Sitka stream

Author keywords

[No Author keywords available]

Indexed keywords

METHANE;

EID: 84894273044     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0080804     Document Type: Article
Times cited : (24)

References (74)
  • 1
    • 28044460522 scopus 로고    scopus 로고
    • Anaerobic microbial metabolism in hyporheic sediment of a gravel bar in a small lowland stream
    • doi:10.1002/rra.866
    • Hlaváčová E, Rulík M, Čáp L (2005) Anaerobic microbial metabolism in hyporheic sediment of a gravel bar in a small lowland stream. River Res Appl 21: 1003-1011. doi:10.1002/rra.866.
    • (2005) River Res Appl , vol.21 , pp. 1003-1011
    • Hlaváčová, E.1    Rulík, M.2    Čáp, L.3
  • 3
    • 0031791592 scopus 로고    scopus 로고
    • The hyporheic zone as a source of dissolved organic carbon and carbon gases to a temperate forested stream
    • DOI 10.1023/A:1006005311257
    • Schindler JE, Krabbenhoft DP (1998) The hyporheic zone as a source of dissolved organic carbon and carbon gases to a temperate forested stream. Biogeochemistry 43: 157-174. doi:10.1023/A:1006005311257. (Pubitemid 28485812)
    • (1998) Biogeochemistry , vol.43 , Issue.2 , pp. 157-174
    • Schindler, J.E.1    Krabbenhoft, D.P.2
  • 4
    • 38349147945 scopus 로고    scopus 로고
    • 2O from low-gradient streams in agriculturally developed catchments
    • doi:10.1007/s11270-007-9532-8
    • 2O from low-gradient streams in agriculturally developed catchments. Water Air, Soil Pollut 188: 155-170. doi:10.1007/s11270- 007-9532-8.
    • (2008) Water Air, Soil Pollut , vol.188 , pp. 155-170
    • Wilcock, R.J.1    Sorrell, B.K.2
  • 5
    • 33646461598 scopus 로고    scopus 로고
    • 2O) emissions to the atmosphere from a small lowland stream
    • doi:10.1127/0003-9136/2006/0165-0339
    • 2O) emissions to the atmosphere from a small lowland stream. Arch Hydrobiol 165: 339-353. doi:10.1127/0003-9136/2006/0165-0339.
    • (2006) Arch Hydrobiol , vol.165 , pp. 339-353
    • Hlaváčová, E.1    Rulík, M.2    Čáp, L.3    Mach, V.4
  • 6
    • 33744483524 scopus 로고    scopus 로고
    • Archaeal habitats - From the extreme to the ordinary
    • DOI 10.1139/w05-147
    • Chaban B, Ng SYM, Jarrell KF (2006) Archaeal habitats - from the extreme to the ordinary. Can J Microbiol 52: 73-116. doi:10.1139/w05-147. PubMed: 16541146. (Pubitemid 43806441)
    • (2006) Canadian Journal of Microbiology , vol.52 , Issue.2 , pp. 73-116
    • Chaban, B.1    Ng, S.Y.M.2    Jarrell, K.F.3
  • 7
    • 0033867966 scopus 로고    scopus 로고
    • Taxonomic, phylogenetic, and ecological diversity of methanogenic Archaea
    • DOI 10.1006/anae.2000.0345
    • Garcia JL, Patel BKC, Ollivier B (2000) Taxonomic, phylogenetic, and ecological diversity of methanogenic Archaea. Anaerobe 6: 205-226. doi:10.1006/anae.2000.0345. PubMed: 16887666. (Pubitemid 30604012)
    • (2000) Anaerobe , vol.6 , Issue.4 , pp. 205-226
    • Garcia, J.-L.1    Patel, B.K.C.2    Ollivier, B.3
  • 9
    • 77953363842 scopus 로고    scopus 로고
    • Methane formation by oxidation of ascorbic acid using iron minerals and hydrogen peroxide
    • doi:10.1016/j.chemosphere.2010.04.004. PubMed: 20444486
    • Althoff F, Jugold A, Keppler F (2010) Methane formation by oxidation of ascorbic acid using iron minerals and hydrogen peroxide. Chemosphere 80: 286-292. doi:10.1016/j.chemosphere.2010.04.004. PubMed: 20444486.
    • (2010) Chemosphere , vol.80 , pp. 286-292
    • Althoff, F.1    Jugold, A.2    Keppler, F.3
  • 10
    • 84870794077 scopus 로고    scopus 로고
    • "Methanoplasmatales," Thermoplasmatales-related archaea in termite guts and other environments, are the seventh order of methanogens
    • doi:10.1128/AEM.02193-12. PubMed: 23001661. Epub 2012 Sep 21
    • Paul K, Nonoh JO, Mikulski L, Brune A (2012) "Methanoplasmatales, " Thermoplasmatales-related archaea in termite guts and other environments, are the seventh order of methanogens. Appl Environ Microbiol 78(23): 8245-8253. doi:10.1128/AEM.02193-12. PubMed: 23001661. Epub 2012 Sep 21
    • (2012) Appl Environ Microbiol , vol.78 , Issue.23 , pp. 8245-8253
    • Paul, K.1    Nonoh, J.O.2    Mikulski, L.3    Brune, A.4
  • 11
    • 84859837631 scopus 로고    scopus 로고
    • Complete Genome Sequence of a Thermophilic methanogen, Methanocella conradii HZ254, Isolated from Chinese Rice Field Soil
    • doi:10.1128/JB.00207-12. PubMed: 22493204
    • Zhe L, Yahai L (2012) Complete Genome Sequence of a Thermophilic methanogen, Methanocella conradii HZ254, Isolated from Chinese Rice Field Soil. J Bacteriol 194(9): 2398-2399. doi:10.1128/JB.00207-12. PubMed: 22493204.
    • (2012) J Bacteriol , vol.194 , Issue.9 , pp. 2398-2399
    • Zhe, L.1    Yahai, L.2
  • 12
    • 0035043535 scopus 로고    scopus 로고
    • Production, oxidation, emission and consumption of methane by soils: A review
    • DOI 10.1016/S1164-5563(01)01067-6
    • Le Mer J, Roger P (2001) Production, oxidation, emission and consumption of methane by soils: a review. European Journal of Soil Biology 37: 25-50. doi:10.1016/S1164-5563(01)01067-6. (Pubitemid 32406435)
    • (2001) European Journal of Soil Biology , vol.37 , Issue.1 , pp. 25-50
    • Le, M.J.1    Roger, P.2
  • 13
    • 2542508293 scopus 로고    scopus 로고
    • Diversity and structure of the methanogenic community in anoxic rice paddy soil microcosms as examined by cultivation and direct 16S rRNA gene sequence retrieval
    • Großkopf R, Janssen PH, Liesack W (1998) Diversity and structure of the methanogenic community in anoxic rice paddy soil microcosms as examined by cultivation and direct 16S rRNA gene sequence retrieval. Appl Environ Microbiol 64: 960-969. PubMed: 9501436. (Pubitemid 28108471)
    • (1998) Applied and Environmental Microbiology , vol.64 , Issue.3 , pp. 960-969
    • Grosskopf, R.1    Janssen, P.H.2    Liesack, W.3
  • 14
    • 27844507042 scopus 로고
    • Taxonomy and ecology of methanogens
    • doi:10.1111/j.1574-6968.1990.tb04928.x
    • Garcia JL (1990) Taxonomy and ecology of methanogens. FEMS Microbiol Rev 87: 297-308. doi:10.1111/j.1574-6968.1990.tb04928.x.
    • (1990) FEMS Microbiol Rev , vol.87 , pp. 297-308
    • Garcia, J.L.1
  • 15
    • 22744434150 scopus 로고    scopus 로고
    • Vertical distribution of structure and function of the methanogenic archaeal community in Lake Dagow sediment
    • DOI 10.1111/j.1462-2920.2005.00790.x
    • Chan OC, Claus P, Casper P, Ulrich A, Lueders T et al. (2005) Vertical distribution of methanogenic archaeal community in Lake Dagow sediment. Environ Microbiol 7: 1139-1149. doi:10.1111/j.1462-2920.2005.00790.x. PubMed: 16011751. (Pubitemid 41026514)
    • (2005) Environmental Microbiology , vol.7 , Issue.8 , pp. 1139-1149
    • On, C.C.1    Claus, P.2    Casper, P.3    Ulrich, A.4    Lueders, T.5    Conrad, R.6
  • 16
    • 0032953045 scopus 로고    scopus 로고
    • Methanococcus vulcanius sp. nov., a novel hyperthermophilic methanogen isolated from East Pacific Rise, and identification of Methanococcus sp. DSM 4213T as Methanococcus fervens sp. nov.
    • PubMed: 10319479
    • Jeanthon C, L'Haridon S, Reysenbach AL, Corre E, Vernet M et al. (1999) Methanococcus vulcanius sp. nov., a novel hyperthermophilic methanogen isolated from East Pacific Rise, and identification of Methanococcus sp. DSM 4213T as Methanococcus fervens sp. nov. Int J Syst Evol Microbiol 49: 583-589. PubMed: 10319479.
    • (1999) Int J Syst Evol Microbiol , vol.49 , pp. 583-589
    • Jeanthon, C.1    L'Haridon, S.2    Reysenbach, A.L.3    Corre, E.4    Vernet, M.5
  • 17
    • 33846197826 scopus 로고    scopus 로고
    • Methanogenic communities in permafrost-affected soils of the Laptev Sea coast, Siberian Arctic, characterized by 16S rRNA gene fingerprints
    • DOI 10.1111/j.1574-6941.2006.00205.x
    • Ganzert L, Jurgens G, Münster U, Wagner D (2007) Methanogenic communities in permafrost-affected soils of the Laptev Sea coast, Siberian Arctic, characterized by 16S rRNA gene fingerprints. FEMS Microbiol Ecol 59: 476-488. PubMed: 16978241. (Pubitemid 46105885)
    • (2007) FEMS Microbiology Ecology , vol.59 , Issue.2 , pp. 476-488
    • Ganzert, L.1    Jurgens, G.2    Munster, U.3    Wagner, D.4
  • 18
    • 4644325724 scopus 로고    scopus 로고
    • Characterisation of microbial community composition of a Siberian tundra soil by fluorescence in situ hybridisation
    • DOI 10.1016/j.femsec.2004.05.003, PII S0168649604001618
    • Kobabe S, Wagner D, Pfeiffer EM (2004) Characterisation of microbial community composition of a Siberian tundra soil by fluorescence in situ hybridization. FEMS Microbiol Ecol 50: 13-23. doi:10.1016/j.femsec.2004.05.003. PubMed: 19712373. (Pubitemid 39265392)
    • (2004) FEMS Microbiology Ecology , vol.50 , Issue.1 , pp. 13-23
    • Kobabe, S.1    Wagner, D.2    Pfeiffer, E.-M.3
  • 19
    • 0030860126 scopus 로고    scopus 로고
    • Microbial community structure in gastrointestinal tracts of domestic animals: Comparative analyzes using rRNA-targeted oligonucleotide probes
    • doi:10.1111/j.1574-6941.1997.tb00380.x
    • Lin C, Raskin L, Stahl DA (1997) Microbial community structure in gastrointestinal tracts of domestic animals: comparative analyzes using rRNA-targeted oligonucleotide probes. FEMS Microbiol Ecol 22: 281-294. doi:10.1111/j.1574-6941.1997.tb00380.x.
    • (1997) FEMS Microbiol Ecol , vol.22 , pp. 281-294
    • Lin, C.1    Raskin, L.2    Stahl, D.A.3
  • 21
    • 35148855832 scopus 로고    scopus 로고
    • Microbial Ecology of Methanogens and Methanotrophs
    • doi:10.1016/S0065-2113(07)96005-8
    • Conrad R (2007) Microbial Ecology of Methanogens and Methanotrophs. Advances in Agronomy 96: 1-63. doi:10.1016/S0065-2113(07)96005-8.
    • (2007) Advances in Agronomy , vol.96 , pp. 1-63
    • Conrad, R.1
  • 22
    • 0028811852 scopus 로고
    • Hydrogen isotopic composition of bacterial methane: Incubation CO2/H2 contribution and acetate fermentation
    • doi:10.1016/0016-7037(95)00047-4
    • Sugimoto A, Wada E (1995) Hydrogen isotopic composition of bacterial methane: incubation CO2/H2 contribution and acetate fermentation. Geochim Cosmochim Acta 59: 1329-1337. doi:10.1016/0016-7037(95)00047-4.
    • (1995) Geochim Cosmochim Acta , vol.59 , pp. 1329-1337
    • Sugimoto, A.1    Wada, E.2
  • 23
    • 0009441383 scopus 로고    scopus 로고
    • Renewable biological systems for alternative sustainable energy production
    • Miyamoto K (1997) Renewable biological systems for alternative sustainable energy production. FAO Agricultural Services Bulletin 128.
    • (1997) FAO Agricultural Services Bulletin 128
    • Miyamoto, K.1
  • 24
    • 0033050621 scopus 로고    scopus 로고
    • Contribution of hydrogen to methane production and control of hydrogen concentrations in methanogenic soils and sediments
    • doi:10.1111/j.1574-6941.1999.tb00575.x
    • Conrad R (1999) Contribution of hydrogen to methane production and control of hydrogen concentrations in methanogenic soils and sediments. FEMS Microbiol Ecol 28: 193-202. doi:10.1111/j.1574-6941.1999.tb00575.x.
    • (1999) FEMS Microbiol Ecol , vol.28 , pp. 193-202
    • Conrad, R.1
  • 25
    • 20144364162 scopus 로고    scopus 로고
    • Higher-level classification of the Archaea: Evolution of methanogenesis and methanogens
    • Bapteste E, Brochier C, Boucher Y (2005) Higher-level classification of the Archaea: evolution of methanogenesis and methanogens. Archaea 1: 353-363. doi:10.1155/2005/859728. PubMed: 15876569. (Pubitemid 40801843)
    • (2005) Archaea , vol.1 , Issue.5 , pp. 353-363
    • Bapteste, E.1    Brochier, C.2    Boucher, Y.3
  • 26
    • 77954415974 scopus 로고    scopus 로고
    • Effect of temperature change on the composition of the bacterial and archaeal community potentially involved in the turnover of acetate and propionate in methanogenic rice field soil
    • doi:10.1111/j.1574-6941.2010.00883.x. PubMed: 20491920
    • Noll M, Klose M, Conrad R (2010) Effect of temperature change on the composition of the bacterial and archaeal community potentially involved in the turnover of acetate and propionate in methanogenic rice field soil. FEMS Microbiol Ecol 73: 215-225. doi:10.1111/j.1574-6941.2010.00883.x. PubMed: 20491920.
    • (2010) FEMS Microbiol Ecol , vol.73 , pp. 215-225
    • Noll, M.1    Klose, M.2    Conrad, R.3
  • 27
    • 0033012295 scopus 로고    scopus 로고
    • Effect of Temperature on Structure and Function of the Methanogenic Archaeal Community in an Anoxic Rice Field Soil
    • PubMed: 10347011
    • Chin KJ, Lukow T, Conrad R (1999) Effect of Temperature on Structure and Function of the Methanogenic Archaeal Community in an Anoxic Rice Field Soil. Appl Environ Microbiol 65: 2341-2349. PubMed: 10347011.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 2341-2349
    • Chin, K.J.1    Lukow, T.2    Conrad, R.3
  • 28
    • 0141592799 scopus 로고    scopus 로고
    • Identification of methyl coenzyme M reductase A (mcrA) genes associated with methane-oxidizing archaea
    • DOI 10.1128/AEM.69.9.5483-5491.2003
    • Hallam SJ, Girguis PR, Preston CM, Richardson PM, DeLong EF (2003) Identification of Methyl Coenzyme M Reductase A (mcrA) Genes Associated with Methane-Oxidizing. Archaea - Appl Environ Microbiol 69: 5483-5491. doi:10.1128/AEM.69.9.5483-5491.2003. (Pubitemid 37150773)
    • (2003) Applied and Environmental Microbiology , vol.69 , Issue.9 , pp. 5483-5491
    • Hallam, S.J.1    Girguis, P.R.2    Preston, C.M.3    Richardson, P.M.4    DeLong, E.F.5
  • 29
    • 12344271962 scopus 로고    scopus 로고
    • The impact of sludge amendment on methanogen community structure in an upland soil
    • DOI 10.1016/j.apsoil.2004.07.004, PII S0929139304000988
    • Sheppard SK, McCarthy AJ, Loughnane JP, Gray ND, Head IM et al. (2005) The impact of sludge amendment on methanogen community structure in an upland soil. Appl Soil Ecol 28: 147-162. doi:10.1016/j.apsoil.2004.07.004. (Pubitemid 40118314)
    • (2005) Applied Soil Ecology , vol.28 , Issue.2 , pp. 147-162
    • Sheppard, S.K.1    McCarthy, A.J.2    Loughnane, J.P.3    Gray, N.D.4    Head, I.M.5    Lloyd, D.6
  • 30
    • 0142154985 scopus 로고    scopus 로고
    • Analysis of methanogen diversity in a hypereutrophic lake using PCR-RFLP analysis of mcr sequences
    • DOI 10.1007/s00248-003-2003-x
    • Earl JG, Hall R, Pickup W, Ritchie DA, Edwards C (2003) Analysis of Methanogen Diversity in a Hypereutrophic Lake Using PCR-RFLP Analysis of mcr Sequences. FEMS Microbiol Ecol 46: 270-278. doi:10.1007/s00248-003-2003-x. (Pubitemid 37298779)
    • (2003) Microbial Ecology , vol.46 , Issue.2 , pp. 270-278
    • Earl, J.1    Hall, G.2    Pickup, R.W.3    Ritchie, D.A.4    Edwards, C.5
  • 31
    • 23744453851 scopus 로고    scopus 로고
    • Methanogen diversity evidenced by molecular characterization of methyl coenzyme M reductase A (mcrA) genes in hydrothermal sediments of the Guaymas Basin
    • DOI 10.1128/AEM.71.8.4592-4601.2005
    • Dhillon A, Lever M, Lloyd KG, Albert DB, Sogin ML et al. (2005) Methanogen Diversity Evidenced by Molecular Characterization of Methyl Coenzyme M Reductase A (mcrA) Genes in Hydrothermal Sediments of the Guaymas Basin. Appl Environ Microbiol 71: 4592-4601. doi:10.1128/AEM.71.8.4592-4601.2005. PubMed: 16085853. (Pubitemid 41129515)
    • (2005) Applied and Environmental Microbiology , vol.71 , Issue.8 , pp. 4592-4601
    • Dhillon, A.1    Lever, M.2    Lloyd, K.G.3    Albert, D.B.4    Sogin, M.L.5    Teske, A.6
  • 32
    • 0034782286 scopus 로고    scopus 로고
    • Archaeal community structures in rice soils from different geographical regions before and after initiation of methane production
    • DOI 10.1016/S0168-6496(01)00158-1, PII S0168649601001581
    • Ramakrishnan B, Leuders T, Dunfield PF, Conrad R, Friedrich MW (2001) Archaeal community structure in rice soils from different geographical regions before and after initiation of methane production. FEMS Microbiol Ecol 37: 175-186. doi:10.1111/j.1574-6941.2001.tb00865.x. (Pubitemid 33000286)
    • (2001) FEMS Microbiology Ecology , vol.37 , Issue.2 , pp. 175-186
    • Ramakrishnan, B.1    Lueders, T.2    Dunfield, P.F.3    Conrad, R.4    Friedrich, M.W.5
  • 33
    • 0036856362 scopus 로고    scopus 로고
    • The mcrA gene as an alternative to 16S rRNA in the phylogenetic analysis of methanogen populations in landfill
    • Luton PE, Wayne JM, Sharp RJ, Riley PW (2002) The mcrA gene as an alternative to 16S rRNA in the phylogenetic analysis of methanogen populations in landfill. Microbiology 148: 3521-3530. PubMed: 12427943. (Pubitemid 35414462)
    • (2002) Microbiology , vol.148 , Issue.11 , pp. 3521-3530
    • Luton, P.E.1    Wayne, J.M.2    Sharp, R.J.3    Riley, P.W.4
  • 34
    • 0034465304 scopus 로고    scopus 로고
    • Methane in the hyporheic zone of a small lowland stream (Sitka, Czech Republic)
    • doi:10.1016/S0075-9511(00)80029-8
    • Rulík M, Čáp L, Hlaváčová E (2000) Methane in the hyporheic zone of a small lowland stream (Sitka, Czech Republic). Limnologica 30: 359-366. doi:10.1016/S0075-9511(00)80029-8.
    • (2000) Limnologica , vol.30 , pp. 359-366
    • Rulík, M.1    Čáp, L.2    Hlaváčová, E.3
  • 35
    • 5344243763 scopus 로고    scopus 로고
    • Extracellular enzyme activity within hyporheic sediments of a smalllowland stream
    • doi:10.1016/j.soilbio.2004.07.005
    • Rulík M, Spáčil R (2004) Extracellular enzyme activity within hyporheic sediments of a smalllowland stream. Soil Biol Biochem 36: 1653-1662. doi:10.1016/j.soilbio.2004.07.005.
    • (2004) Soil Biol Biochem , vol.36 , pp. 1653-1662
    • Rulík, M.1    Spáčil, R.2
  • 36
    • 84876055277 scopus 로고    scopus 로고
    • Methanogens and methanotrophs distribution in the hyporheic sediments of a small lowland stream
    • Buriánková I, Brablcová L, Mach V, Hýblová A, Badurová P et al. (2012) Methanogens and methanotrophs distribution in the hyporheic sediments of a small lowland stream. Fundam Appl Limnol 17: 87-102.
    • (2012) Fundam Appl Limnol , vol.17 , pp. 87-102
    • Buriánková, I.1    Brablcová, L.2    Mach, V.3    Hýblová, A.4    Badurová, P.5
  • 37
    • 0022830484 scopus 로고
    • Quantitative methods and aspects in the study of the interstitial fauna of running waters
    • Bretschko G, Klemens WE (1986) Quantitative methods and aspects in the study of the interstitial fauna of running waters. Stygologia 2: 297-316.
    • (1986) Stygologia , vol.2 , pp. 297-316
    • Bretschko, G.1    Klemens, W.E.2
  • 38
    • 0000062219 scopus 로고
    • Bacterial substrates in gravel beds of a second order alpine stream (Project Ritrodat-Lunz, Austria)
    • Leichtfried M (1988) Bacterial substrates in gravel beds of a second order alpine stream (Project Ritrodat-Lunz, Austria). Verh Internat Verein Limnol 23: 1325-1332.
    • (1988) Verh Internat Verein Limnol , vol.23 , pp. 1325-1332
    • Leichtfried, M.1
  • 39
    • 0002905517 scopus 로고
    • Phosphorus, nitrogen, and organic carbon flux in a headwater stream
    • Meyer JL, Likens GE, Sloane J (1981) Phosphorus, nitrogen, and organic carbon flux in a headwater stream. Arch Hydrobiol 91: 28-44.
    • (1981) Arch Hydrobiol , vol.91 , pp. 28-44
    • Meyer, J.L.1    Likens, G.E.2    Sloane, J.3
  • 40
    • 0346750618 scopus 로고    scopus 로고
    • Stream and interstitial water DOC of a gravel bar (Sitka stream, Czech Republic): Characteristics, dynamics and presumable origin
    • doi:10.1127/0003-9136/2003/0158-0407
    • Truleyová Š, Rulík M, Popelka J (2003) Stream and interstitial water DOC of a gravel bar (Sitka stream, Czech Republic): characteristics, dynamics and presumable origin. Arch Hydrobiol 158: 407-420. doi:10.1127/0003-9136/2003/0158-0407.
    • (2003) Arch Hydrobiol , vol.158 , pp. 407-420
    • Truleyová, Š.1    Rulík, M.2    Popelka, J.3
  • 41
    • 0031943516 scopus 로고    scopus 로고
    • Methane production and methane consumption: A review of processes underlying wetland methane fluxes
    • doi:10.1023/A:1005929032764
    • Segers R (1998) Methane production and methane consumption: a review of processes underlying wetland methane fluxes. Biogeochemistry 41: 23-51. doi:10.1023/A:1005929032764.
    • (1998) Biogeochemistry , vol.41 , pp. 23-51
    • Segers, R.1
  • 43
    • 33751536386 scopus 로고    scopus 로고
    • Fluorescence in situ Hybridization with rRNA-targeted Oligonucleotide Probes
    • Marine Microbiology
    • Pernthaler J, Glockner FO, Schonhuber W, Amann R (2001) Fluorescence in situ hybridization (FISH) with rRNA-targeted oligonucleotide probes. Methods in Microbiology 30: 207-226. doi:10.1016/S0580-9517(01)30046-6. (Pubitemid 33287422)
    • (2001) METHODS IN MICROBIOLOGY , Issue.30 , pp. 207-226
    • Pernthaler, J.1    Glockner, F.-O.2    Schonhuber, W.3    Amann, R.4
  • 44
    • 34447532558 scopus 로고    scopus 로고
    • Structure and function of methanogens along a short-term restoration chronosequence in the Florida Everglades
    • DOI 10.1128/AEM.02557-06
    • Smith JM, Castro H, Ogram A (2007) Structure and Function of Methanogens along a Short-Term Restoration Chronosequence in the Florida Everglades. Appl Environ Microbiol 73: 4135-4141. doi:10.1128/AEM.02557-06. PubMed: 17449688. (Pubitemid 47068150)
    • (2007) Applied and Environmental Microbiology , vol.73 , Issue.13 , pp. 4135-4141
    • Smith, J.M.1    Castro, H.2    Ogram, A.3
  • 45
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL 295 W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680. doi:10.1093/nar/22.22.4673. PubMed: 7984417. (Pubitemid 24354800)
    • (1994) Nucleic Acids Research , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 46
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
    • doi:10.1093/molbev/msr121. PubMed: 21546353
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M et al. (2011) MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Mol Biol Evol 28: 2731-2739. doi:10.1093/molbev/msr121. PubMed: 21546353.
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5
  • 47
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • doi:10.2307/2408678
    • Felsenstein J (1985) Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39: 783-791. doi:10.2307/2408678.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 50
    • 33748744860 scopus 로고    scopus 로고
    • Temporal changes in the bacterial assemblage of a Northeast Ohio stream: A comparison of community and population-level responses
    • DOI 10.1127/0003-9136/2006/0166-0491
    • Santmire JA, Leff LG (2006) Temporal changes in the bacterial assemblage of a Northeast Ohio stream: a comparison of community and population-level responses. Arch Hydrobiol 166: 491-503. (Pubitemid 44400900)
    • (2006) Archiv fur Hydrobiologie , vol.166 , Issue.4 , pp. 491-503
    • Santmire, J.A.1    Leff, L.G.2
  • 51
    • 77953926286 scopus 로고    scopus 로고
    • Influence of streambed sediment clogging on microbial processes in the hyporheic zone
    • doi:10.1111/j.1365-2427.2009.02352.x
    • Nogaro G, Datry T, Mermillod-Blondin F, Descloux S, Montuelle B (2010) Influence of streambed sediment clogging on microbial processes in the hyporheic zone. Freshwat Biol 55: 1288-1302. doi:10.1111/j.1365-2427.2009.02352.x.
    • (2010) Freshwat Biol , vol.55 , pp. 1288-1302
    • Nogaro, G.1    Datry, T.2    Mermillod-Blondin, F.3    Descloux, S.4    Montuelle, B.5
  • 52
    • 50549085647 scopus 로고    scopus 로고
    • Recovery and quantification of bacterial cells associated with streambed sediments
    • doi:10.1016/j.mimet.2008.06.004. PubMed: 18602952
    • Amalfitano S, Fazi S (2008) Recovery and quantification of bacterial cells associated with streambed sediments. J Microbiol Methods 75: 237-243. doi:10.1016/j.mimet.2008.06.004. PubMed: 18602952.
    • (2008) J Microbiol Methods , vol.75 , pp. 237-243
    • Amalfitano, S.1    Fazi, S.2
  • 53
    • 65449120756 scopus 로고    scopus 로고
    • Sonication is superior to scraping for retrieval of bacteria in biofilm on titanium and steel surfaces in vitro
    • doi:10.3109/17453670902947457. PubMed: 19404811
    • Bjerkan G, Witsø E, Bergh K (2009) Sonication is superior to scraping for retrieval of bacteria in biofilm on titanium and steel surfaces in vitro. Acta Orthop 80: 245-250. doi:10.3109/17453670902947457. PubMed: 19404811.
    • (2009) Acta Orthop , vol.80 , pp. 245-250
    • Bjerkan, G.1    Witsø, E.2    Bergh, K.3
  • 54
    • 25144507206 scopus 로고    scopus 로고
    • Bacterial communities associated with benthic organic matter in headwater stream microhabitats
    • DOI 10.1111/j.1462-2920.2005.00857.x
    • Fazi S, Amalfitano S, Pernthaler J, Puddu A (2005). Bacterial Communities Associated with Benthic Organic Matter in Headwater Stream Microhabitats. Environ Microbiol 7: 1633-1640. (Pubitemid 41345905)
    • (2005) Environmental Microbiology , vol.7 , Issue.10 , pp. 1633-1640
    • Fazi, S.1    Amalfitano, S.2    Pernthaler, J.3    Puddu, A.4
  • 55
    • 79958263914 scopus 로고    scopus 로고
    • Competing formate- and carbon dioxide-utilizing prokaryotes in an anoxic methane-emitting fen soil
    • doi:10.1128/AEM.00282-11. PubMed: 21478308
    • Hunger S, Schmidt O, Hilgarth M, Horn MA, Kolb S et al. (2011) Competing formate- and carbon dioxide-utilizing prokaryotes in an anoxic methane-emitting fen soil. Appl Environ Microbiol 77: 3773-3785. doi:10.1128/AEM.00282-11. PubMed: 21478308.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 3773-3785
    • Hunger, S.1    Schmidt, O.2    Hilgarth, M.3    Horn, M.A.4    Kolb, S.5
  • 56
    • 44849083800 scopus 로고    scopus 로고
    • Methanogen community in Zoige wetland of Tibetan plateau and phenotypic characterization of a dominant uncultured methanogen cluster ZC-I
    • DOI 10.1111/j.1462-2920.2008.01606.x
    • Zhang G, Tian J, Jiang N, Guo X, Wang Y et al. (2008) Methanogen community in Zoige wetland of Tibetan plateau and phenotypic characterization of a dominant uncultured methanogen cluster ZC-I. Environ Microbiol 10(7): 1850-1860. doi:10.1111/j.1462-2920.2008.01606.x. PubMed: 18373675. (Pubitemid 351793625)
    • (2008) Environmental Microbiology , vol.10 , Issue.7 , pp. 1850-1860
    • Zhang, G.1    Tian, J.2    Jiang, N.3    Guo, X.4    Wang, Y.5    Dong, X.6
  • 57
    • 38949155147 scopus 로고    scopus 로고
    • Soil type links microbial colonization of rice roots to methane emission
    • DOI 10.1111/j.1365-2486.2007.01516.x
    • Conrad R, Klose M, Noll M, Kemnitz D, Bodelier PLE (2008) Soil type links microbial colonization of rice roots to methane emission. Glob Chang Biol 14: 657-669. doi:10.1111/j.1365-2486.2007.01516.x. (Pubitemid 351228535)
    • (2008) Global Change Biology , vol.14 , Issue.3 , pp. 657-669
    • Conrad, R.1    Klose, M.2    Noll, M.3    Kemnitz, D.4    Bodelier, P.L.E.5
  • 58
    • 79961168056 scopus 로고    scopus 로고
    • Identification of microbial communities involved in the methane cycle of a freshwater meromictic lake
    • doi:10.1111/j.1574-6941.2011.01134.x. PubMed: 21595728
    • Biderre-Petit C, Jézéquel D, Dugat-Bony E, Lopes F, Kuever J, Borrel G et al. (2011) Identification of microbial communities involved in the methane cycle of a freshwater meromictic lake. FEMS Microbiol Ecol 77: 533-545. doi:10.1111/j.1574-6941.2011.01134.x. PubMed: 21595728.
    • (2011) FEMS Microbiol Ecol , vol.77 , pp. 533-545
    • Biderre-Petit, C.1    Jézéquel, D.2    Dugat-Bony, E.3    Lopes, F.4    Kuever, J.5    Borrel, G.6
  • 59
    • 1942443842 scopus 로고    scopus 로고
    • Community analysis of methanogenic archaea within a riparian flooding gradient
    • DOI 10.1111/j.1462-2920.2004.00573.x
    • Kemnitz D, Chin KJ, Bodelier P, Conrad R (2004) Community analysis of methanogenic archaea within a riparian flooding gradient. Environ Microbiol 6: 449-461. doi:10.1111/j.1462-2920.2004.00573.x. PubMed: 15049918. (Pubitemid 38503684)
    • (2004) Environmental Microbiology , vol.6 , Issue.5 , pp. 449-461
    • Kemnitz, D.1    Chin, K.-J.2    Bodelier, P.3    Conrad, R.4
  • 60
    • 1942443842 scopus 로고    scopus 로고
    • Spatial structure and persistence of methanogen populations in humic bog lakes
    • doi:10.1111/j.1462-2920.2004.00573.x. PubMed: 15049918
    • Milferstedt K, Youngblut ND, Whitaker RJ (2004) Spatial structure and persistence of methanogen populations in humic bog lakes. Environ Microbiol 6 (5): 449-461. doi:10.1111/j.1462-2920.2004.00573.x. PubMed: 15049918.
    • (2004) Environ Microbiol , vol.6 , Issue.5 , pp. 449-461
    • Milferstedt, K.1    Youngblut, N.D.2    Whitaker, R.J.3
  • 61
    • 67649582926 scopus 로고    scopus 로고
    • mcrA-targeted real-time quantitative PCR method to examine methanogen communities
    • doi:10.1128/AEM.02858-08. PubMed: 19447957
    • Steinberg LM, Regan JM (2009) mcrA-targeted real-time quantitative PCR method to examine methanogen communities. Appl Environ Microbiol 75 (13): 4435-4442. doi:10.1128/AEM.02858-08. PubMed: 19447957.
    • (2009) Appl Environ Microbiol , vol.75 , Issue.13 , pp. 4435-4442
    • Steinberg, L.M.1    Regan, J.M.2
  • 62
    • 84866155065 scopus 로고    scopus 로고
    • Methane-cycling microbial communities and methane emission in natural and restored peatlands
    • doi:10.1128/AEM.00261-12. PubMed: 22752167
    • Juottonen H, Hynninen A, Nieminen M, Tuomivirta TT, Tuittila ES et al. (2012) Methane-cycling microbial communities and methane emission in natural and restored peatlands. Appl Environ Microbiol 78 (17): 6386-6389. doi:10.1128/AEM.00261-12. PubMed: 22752167.
    • (2012) Appl Environ Microbiol , vol.78 , Issue.17 , pp. 6386-6389
    • Juottonen, H.1    Hynninen, A.2    Nieminen, M.3    Tuomivirta, T.T.4    Tuittila, E.S.5
  • 64
    • 43049141117 scopus 로고    scopus 로고
    • Investigation of methanogen population structure in biogas reactor by molecular characterization of methyl-coenzyme M reductase A (mcrA) genes
    • doi:10.1016/j.biortech.2007.11.024. PubMed: 18155901
    • Rastogi G, Ranade DR, Yeole TY, Patole MS, Shouche YS (2008) Investigation of methanogen population structure in biogas reactor by molecular characterization of methyl-coenzyme M reductase A (mcrA) genes. Bioresour Technol 99 (13): 5317-5326. doi:10.1016/j.biortech.2007.11.024. PubMed: 18155901.
    • (2008) Bioresour Technol , vol.99 , Issue.13 , pp. 5317-5326
    • Rastogi, G.1    Ranade, D.R.2    Yeole, T.Y.3    Patole, M.S.4    Shouche, Y.S.5
  • 65
    • 0000803388 scopus 로고
    • The population frequencies of species and the estimation of population parameters
    • doi:10.2307/2333344
    • Good IJ (1953) The population frequencies of species and the estimation of population parameters. Biometrika 40: 237-262. doi:10.2307/2333344.
    • (1953) Biometrika , vol.40 , pp. 237-262
    • Good, I.J.1
  • 68
    • 33947271334 scopus 로고    scopus 로고
    • Community structure of Archaea and Bacteria in a profundal lake sediment Lake Kinneret (Israel)
    • DOI 10.1016/j.syapm.2006.05.004, PII S0723202006000737
    • Schwarz JIK, Eckert W, Conrad R (2007) Community structure of Archaea and Bacteria in a profundal lake sediment Lake Kinneret (Israel). Syst Appl Microbiol 30: 239-254. doi:10.1016/j.syapm.2006.05.004. PubMed: 16857336. (Pubitemid 46428502)
    • (2007) Systematic and Applied Microbiology , vol.30 , Issue.3 , pp. 239-254
    • Schwarz, J.I.K.1    Eckert, W.2    Conrad, R.3
  • 69
    • 79951552894 scopus 로고    scopus 로고
    • Investigation of Microbial Populations in the Extremely Metal-Contaminated Coeur d'Alene River Sediments
    • doi:10.3354/ame01451. PubMed: 21331609
    • Rastogi G, Barua S, Sani RK, Peyton BM (2011) Investigation of Microbial Populations in the Extremely Metal-Contaminated Coeur d'Alene River Sediments. Microb Ecol 62: 1-13. doi:10.3354/ame01451. PubMed: 21331609.
    • (2011) Microb Ecol , vol.62 , pp. 1-13
    • Rastogi, G.1    Barua, S.2    Sani, R.K.3    Peyton, B.M.4
  • 70
    • 80052299526 scopus 로고    scopus 로고
    • Methyl Coenzyme M Reductase (mcrA) gene based phylogenetic analysis of methanogenspopulation in Murrah Buffaloes (Bubalus bubalis)
    • doi:10.1007/s12275-011-1052-y
    • Chaudhary PP, Sirohi SK, Singh D, Saxena J (2011) Methyl Coenzyme M Reductase (mcrA) gene based phylogenetic analysis of methanogenspopulation in Murrah Buffaloes (Bubalus bubalis). J Microbiol 49(4): 558-561. doi:10.1007/s12275-011-1052-y.
    • (2011) J Microbiol , vol.49 , Issue.4 , pp. 558-561
    • Chaudhary, P.P.1    Sirohi, S.K.2    Singh, D.3    Saxena, J.4
  • 71
    • 84655163822 scopus 로고    scopus 로고
    • Diversity analysis of methanogens in rumen of Bubalus bubalis by 16S riboprinting and sequence analysis
    • doi:10.1016/j.gene.2011.11.041. PubMed: 22155312
    • Chaudhary PP, Sirohi SK, Saxena J (2012) Diversity analysis of methanogens in rumen of Bubalus bubalis by 16S riboprinting and sequence analysis. Gene 493: 13-17. doi:10.1016/j.gene.2011.11.041. PubMed: 22155312.
    • (2012) Gene , vol.493 , pp. 13-17
    • Chaudhary, P.P.1    Sirohi, S.K.2    Saxena, J.3
  • 72
    • 84892604041 scopus 로고    scopus 로고
    • Molecular diversity and tools for deciphering the methanogen community structure and diversity in freshwater sediments
    • doi:10.1007/s00253-013-5102-8. PubMed: 23877581
    • Chaudhary PP, Brablcová L, Buriánková I, Rulík M (2013) Molecular diversity and tools for deciphering the methanogen community structure and diversity in freshwater sediments. Appl Microbiol Biotechnol 97(17): 7553-7562. doi:10.1007/s00253-013-5102-8. PubMed: 23877581.
    • (2013) Appl Microbiol Biotechnol , vol.97 , Issue.17 , pp. 7553-7562
    • Chaudhary, P.P.1    Brablcová, L.2    Buriánková, I.3    Rulík, M.4
  • 73
    • 34548479471 scopus 로고    scopus 로고
    • Detection of methanogenic Archaea in peat: Comparison of PCR primers targeting the mcrA gene
    • DOI 10.1016/j.resmic.2006.08.006, PII S0923250806001938
    • Juottonen H, Galand PE, Yrjälä K (2006) Detection of methanogenic Archaea in peat: comparison of PCR primers targeting the mcrA gene. Res Microbiol 157: 914-921. doi:10.1016/j.resmic.2006.08.006. PubMed: 17070673. (Pubitemid 44828465)
    • (2006) Research in Microbiology , vol.157 , Issue.10 , pp. 914-921
    • Juottonen, H.1    Galand, P.E.2    Yrjala, K.3
  • 74
    • 0032923140 scopus 로고    scopus 로고
    • Role of multiple gene copies in particulate methane monooxygenase activity in the methane-oxidizing bacterium Methylococcus capsulatus Bath
    • Stolyar S, Costello AM, Lidstrom MA, Peeples TL (1999) Role of multiple gene copies in particulate methane monooxygenase activity in the methane-oxidizing bacterium Methylococcus capsulatus Bath. Microbiology 5: 1235-1244. (Pubitemid 29231828)
    • (1999) Microbiology , vol.145 , Issue.5 , pp. 1235-1244
    • Stolyar, S.1    Costello, A.M.2    Peeples, T.L.3    Lidstrom, M.E.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.