-
1
-
-
0033758582
-
Ribosomal RNA-targeted nucleic acid probes for studies in microbial ecology
-
Amann, R., and Ludwig, W. (2000) Ribosomal RNA-targeted nucleic acid probes for studies in microbial ecology. FEMS Microbiol Rev 24: 555-565.
-
(2000)
FEMS Microbiol Rev
, vol.24
, pp. 555-565
-
-
Amann, R.1
Ludwig, W.2
-
2
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
Amann, R., Ludwig, W., and Schleifer, K.H. (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59: 143-169.
-
(1995)
Microbiol Rev
, vol.59
, pp. 143-169
-
-
Amann, R.1
Ludwig, W.2
Schleifer, K.H.3
-
3
-
-
0037311880
-
Bacterial activity and community composition in stream water and biofilm from urban river determined by fluorescent in situ hybridization and DGGE analysis
-
Araya, R., Tani, K., Takagi, T., Yamaguchi, N., and Nasu, M. (2003) Bacterial activity and community composition in stream water and biofilm from urban river determined by fluorescent in situ hybridization and DGGE analysis. FEMS Microbiol Ecol 43: 111-119.
-
(2003)
FEMS Microbiol Ecol
, vol.43
, pp. 111-119
-
-
Araya, R.1
Tani, K.2
Takagi, T.3
Yamaguchi, N.4
Nasu, M.5
-
4
-
-
0036222111
-
Compositional changes in free-living bacterial communities along a salinity gradient in two temperate estuaries
-
Bouvier, T.C., and del Giorgio, P.A. (2002) Compositional changes in free-living bacterial communities along a salinity gradient in two temperate estuaries. Limnol Oceanogr 47: 453-470.
-
(2002)
Limnol Oceanogr
, vol.47
, pp. 453-470
-
-
Bouvier, T.C.1
Del Giorgio, P.A.2
-
5
-
-
0038532917
-
Factors influencing the detection of bacterial cells using fluorescence in situ hybridization (FISH): A qualitative review of published reports
-
Bouvier, T.C., and del Giorgio, P.A. (2003) Factors influencing the detection of bacterial cells using fluorescence in situ hybridization (FISH): a qualitative review of published reports. FEMS Microbiol Ecol 44: 3-15.
-
(2003)
FEMS Microbiol Ecol
, vol.44
, pp. 3-15
-
-
Bouvier, T.C.1
Del Giorgio, P.A.2
-
6
-
-
0043031293
-
Diversity and seasonal variability of β-proteobacteria in biofilms of polluted rivers: Analysis by temperature gradient gel electrophoresis and cloning
-
Brümmer, I.H.M., Felske, A., and Wagner-Döbler, I. (2003) Diversity and seasonal variability of β-proteobacteria in biofilms of polluted rivers: analysis by temperature gradient gel electrophoresis and cloning. Appl Environ Microbiol 69: 4463-4473.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 4463-4473
-
-
Brümmer, I.H.M.1
Felske, A.2
Wagner-Döbler, I.3
-
7
-
-
0030613462
-
Characteristic of biofilms assemblages in two contrasted hydrodynamic and trophic contexts
-
Claret, C., and Fontvielle, D. (1997) Characteristic of biofilms assemblages in two contrasted hydrodynamic and trophic contexts. Microb Ecol 34: 49-57.
-
(1997)
Microb Ecol
, vol.34
, pp. 49-57
-
-
Claret, C.1
Fontvielle, D.2
-
8
-
-
0035206784
-
Quantification of bacterial subgroups in soil: Comparison of DNA extracted directly from soil or from cells previously released by density gradient centrifugation
-
Courtois, S., Frostegard, A., Goransson, P., Depret, G., Jeannin, P., and Simonet, P. (2001) Quantification of bacterial subgroups in soil: comparison of DNA extracted directly from soil or from cells previously released by density gradient centrifugation. Environ Microbiol 3: 431-439.
-
(2001)
Environ Microbiol
, vol.3
, pp. 431-439
-
-
Courtois, S.1
Frostegard, A.2
Goransson, P.3
Depret, G.4
Jeannin, P.5
Simonet, P.6
-
9
-
-
0344172842
-
The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: Development and evaluation of a more comprehensive probe set
-
Daims, H., Bruhl, A., Amann, R., Schleifer, K.H., and Wagner, M. (1999) The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set. Syst Appl Microbiol 22: 434-444.
-
(1999)
Syst Appl Microbiol
, vol.22
, pp. 434-444
-
-
Daims, H.1
Bruhl, A.2
Amann, R.3
Schleifer, K.H.4
Wagner, M.5
-
10
-
-
0034443286
-
Microbial biofilms: From ecology to molecular genetics
-
Davey, M.E., and O'Toole, G.A. (2000) Microbial biofilms: from ecology to molecular genetics. Microbiol Mol Biol Rev 64: 847-867.
-
(2000)
Microbiol Mol Biol Rev
, vol.64
, pp. 847-867
-
-
Davey, M.E.1
O'Toole, G.A.2
-
11
-
-
25144483424
-
Criteri di selezione e caratterizzazione idromorfologica e chimico-fisica delle aree di studio e siti di indagine nell'Italia appenninica e in Sardegna
-
Erba, S., Balestrini, R., Cazzola, M., Casalegno, C., and Buffagni, A. (2004) Criteri di selezione e caratterizzazione idromorfologica e chimico-fisica delle aree di studio e siti di indagine nell'Italia appenninica e in Sardegna. Quaderni dell' Istituto di Ricerca delle Acque, IRSA-CNR 122: 81-104.
-
(2004)
Quaderni Dell' Istituto di Ricerca Delle Acque, IRSA-CNR
, vol.122
, pp. 81-104
-
-
Erba, S.1
Balestrini, R.2
Cazzola, M.3
Casalegno, C.4
Buffagni, A.5
-
12
-
-
0036047019
-
A cross-system comparison of bacterial and fungal biomass in detritus pools of headwater streams
-
Findlay, S., Tank, J., Dye, S., Valett, H.M., Mulholland, P.J., McDowell, W.H., et al. (2002) A cross-system comparison of bacterial and fungal biomass in detritus pools of headwater streams. Microb Ecol 43: 55-66.
-
(2002)
Microb Ecol
, vol.43
, pp. 55-66
-
-
Findlay, S.1
Tank, J.2
Dye, S.3
Valett, H.M.4
Mulholland, P.J.5
McDowell, W.H.6
-
13
-
-
0035892001
-
Spatial trends in sediment structure, bacteria, and periphyton communities across a freshwater ecotone
-
Fleituch, T., Starzecka, A., and Bednarz, T. (2001) Spatial trends in sediment structure, bacteria, and periphyton communities across a freshwater ecotone. Hydrobiologia 464: 165-174.
-
(2001)
Hydrobiologia
, vol.464
, pp. 165-174
-
-
Fleituch, T.1
Starzecka, A.2
Bednarz, T.3
-
14
-
-
17644439150
-
Bacterioplankton compositions of lakes and oceans: A first comparison based on fluorescence in situ hybridization
-
Glöckner, F.O., Fuchs, B.M., and Amann, R. (1999) Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization. Appl Environ Microbiol 65: 3721-3726.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 3721-3726
-
-
Glöckner, F.O.1
Fuchs, B.M.2
Amann, R.3
-
15
-
-
2142693247
-
Physiological and community responses of established grassland bacterial populations to water stress
-
Griffiths, R.I., Whiteley, A.S., O'Donnell, A.G., and Bailey, M.J. (2003) Physiological and community responses of established grassland bacterial populations to water stress. Appl Environ Microbiol 69: 6961-6968.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 6961-6968
-
-
Griffiths, R.I.1
Whiteley, A.S.2
O'Donnell, A.G.3
Bailey, M.J.4
-
16
-
-
0037422740
-
Interactions between stream fungi and bacteria associated with decomposing leaf litter at different levels of nutrients availability
-
Gulis, V., and Suberkropp, K. (2003) Interactions between stream fungi and bacteria associated with decomposing leaf litter at different levels of nutrients availability. Aquat Microb Ecol 30: 149-157.
-
(2003)
Aquat Microb Ecol
, vol.30
, pp. 149-157
-
-
Gulis, V.1
Suberkropp, K.2
-
17
-
-
0035956599
-
Quantification of ammonia-oxidizing bacteria in soil using microcolony technique combined with fluorescence in situ hybridization (MCFU-FISH)
-
Hesselsøe, M., Brandt, K.K., and Sørensen, J. (2001) Quantification of ammonia-oxidizing bacteria in soil using microcolony technique combined with fluorescence in situ hybridization (MCFU-FISH). FEMS Microbiol Ecol 38: 87-95.
-
(2001)
FEMS Microbiol Ecol
, vol.38
, pp. 87-95
-
-
Hesselsøe, M.1
Brandt, K.K.2
Sørensen, J.3
-
18
-
-
0027086095
-
Bacterial productivity in forested and open streams in southern Ontario
-
Hudson, J.J., Roff, J.C., and Burnison, B.K. (1992) Bacterial productivity in forested and open streams in southern Ontario. Can J Fish Aquat Sci 49: 2412-2422.
-
(1992)
Can J Fish Aquat Sci
, vol.49
, pp. 2412-2422
-
-
Hudson, J.J.1
Roff, J.C.2
Burnison, B.K.3
-
19
-
-
8344250319
-
An improved fluorescence in situ hybridization protocol for the identification of bacteria and archaea in marine sediments
-
Ishii, K., Mußmann, M., MacGregor, B.J., and Amann, R. (2004) An improved fluorescence in situ hybridization protocol for the identification of bacteria and archaea in marine sediments. FEMS Microbiol Ecol 50: 203-212.
-
(2004)
FEMS Microbiol Ecol
, vol.50
, pp. 203-212
-
-
Ishii, K.1
Mußmann, M.2
MacGregor, B.J.3
Amann, R.4
-
20
-
-
0035122133
-
Successional changes in bacterial assemblage structure during epilithic biofilm development
-
Jackson, C.R., Churchill, P.F., and Roden, E.E. (2001) Successional changes in bacterial assemblage structure during epilithic biofilm development. Ecology 82: 555-566.
-
(2001)
Ecology
, vol.82
, pp. 555-566
-
-
Jackson, C.R.1
Churchill, P.F.2
Roden, E.E.3
-
21
-
-
0032855859
-
Small ribosomal RNA content in marine Proteobacteria during non-steady-state growth
-
Kerkhof, L., and Kemp, P. (1999) Small ribosomal RNA content in marine Proteobacteria during non-steady-state growth. FEMS Microbiol Ecol 30: 253-260.
-
(1999)
FEMS Microbiol Ecol
, vol.30
, pp. 253-260
-
-
Kerkhof, L.1
Kemp, P.2
-
22
-
-
0036207009
-
The ecology of Cytophaga-Flavobacteria in aquatic environments
-
Kirchman, D.L. (2002) The ecology of Cytophaga-Flavobacteria in aquatic environments. FEMS Microbiol Ecol 39: 91-100.
-
(2002)
FEMS Microbiol Ecol
, vol.39
, pp. 91-100
-
-
Kirchman, D.L.1
-
23
-
-
4143075890
-
Changes in bacterial activity and community structure in response to dissolved organic matter in the Hudson River, New York
-
Kirchman, D.L., Dittel, A.I., Findlay, S.E.G., and Fischer, D. (2004) Changes in bacterial activity and community structure in response to dissolved organic matter in the Hudson River, New York. Aquat Microb Ecol 35: 243-257.
-
(2004)
Aquat Microb Ecol
, vol.35
, pp. 243-257
-
-
Kirchman, D.L.1
Dittel, A.I.2
Findlay, S.E.G.3
Fischer, D.4
-
24
-
-
0030817423
-
The response of three bacterial populations to pollution in a stream
-
Lemke, M.J., Brown, B.J., and Leff, L.G. (1997) The response of three bacterial populations to pollution in a stream. Microb Ecol 34: 224-231.
-
(1997)
Microb Ecol
, vol.34
, pp. 224-231
-
-
Lemke, M.J.1
Brown, B.J.2
Leff, L.G.3
-
25
-
-
0030174626
-
Improved soil dispersion procedures for total bacterial counts, extraction of indigenous bacteria and cell survival
-
Lindahl, V. (1996) Improved soil dispersion procedures for total bacterial counts, extraction of indigenous bacteria and cell survival. J Microbiol Meth 25: 279-286.
-
(1996)
J Microbiol Meth
, vol.25
, pp. 279-286
-
-
Lindahl, V.1
-
26
-
-
0344765523
-
Microbial community composition of Wadden sea sediments as revealed by fluorescence in situ hybridization
-
Llobet-Brossa, E., Rossello-Mora, R., and Amann, R. (1998) Microbial community composition of Wadden sea sediments as revealed by fluorescence in situ hybridization. Appl Environ Microbiol 64: 2691-2696.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 2691-2696
-
-
Llobet-Brossa, E.1
Rossello-Mora, R.2
Amann, R.3
-
27
-
-
9244221684
-
Relationship between sediment organic matter, bacterial composition, and the ecosystem metabolism of alpine streams
-
Logue, J.B., Robinson, C.T., Meier, C., and Van der Meer, J.R. (2004) Relationship between sediment organic matter, bacterial composition, and the ecosystem metabolism of alpine streams. Limnol Oceanogr 49: 2001-2010.
-
(2004)
Limnol Oceanogr
, vol.49
, pp. 2001-2010
-
-
Logue, J.B.1
Robinson, C.T.2
Meier, C.3
Van Der Meer, J.R.4
-
28
-
-
3042700147
-
Bacterial diversity in deep Mediterranean sediments: Relationship with the active bacterial fraction and substrate availability
-
Luna, G.M., Dell'Anno, A., Giuliano, L., and Danovaro, R. (2004) Bacterial diversity in deep Mediterranean sediments: relationship with the active bacterial fraction and substrate availability. Environ Microbiol 6: 745-753.
-
(2004)
Environ Microbiol
, vol.6
, pp. 745-753
-
-
Luna, G.M.1
Dell'Anno, A.2
Giuliano, L.3
Danovaro, R.4
-
29
-
-
1542301476
-
Distribution and culturability of the uncultivated 'AGG58 cluster' of the Bacteroidetes phylum in aquatic environments
-
O'Sullivan, L.A., Fuller, K.E., Thomas, E.M., Turley, C.M., Fry, J.C., and Weightman, A.J. (2004) Distribution and culturability of the uncultivated 'AGG58 cluster' of the Bacteroidetes phylum in aquatic environments. FEMS Microbiol Ecol 47: 359-370.
-
(2004)
FEMS Microbiol Ecol
, vol.47
, pp. 359-370
-
-
O'Sullivan, L.A.1
Fuller, K.E.2
Thomas, E.M.3
Turley, C.M.4
Fry, J.C.5
Weightman, A.J.6
-
30
-
-
0034039228
-
Influence of growth rate and starvation on fluorescent in situ hybridization of Rhodopseudomonas palustris
-
Oda, Y., Slagman, S.J., Meijer, W.G., Forney, L.J., and Gottschal, J.C. (2000) Influence of growth rate and starvation on fluorescent in situ hybridization of Rhodopseudomonas palustris. FEMS Microbiol Ecol 32: 205-213.
-
(2000)
FEMS Microbiol Ecol
, vol.32
, pp. 205-213
-
-
Oda, Y.1
Slagman, S.J.2
Meijer, W.G.3
Forney, L.J.4
Gottschal, J.C.5
-
31
-
-
33751536386
-
Fluorescence in situ hybridization (FISH) with rRNA-targeted oligonucleotide probes
-
Pernthaler, J., Glöckner, F.O., Schönhuber, W., and Amann, R. (2001) Fluorescence in situ hybridization (FISH) with rRNA-targeted oligonucleotide probes. Methods Microbiol 30: 207-226.
-
(2001)
Methods Microbiol
, vol.30
, pp. 207-226
-
-
Pernthaler, J.1
Glöckner, F.O.2
Schönhuber, W.3
Amann, R.4
-
32
-
-
0036276618
-
Fluorescence in situ hybridization and catalysed reporter deposition for the identification of marine bacteria
-
Pernthaler, A., Pernthaler, J., and Amann, R. (2002) Fluorescence in situ hybridization and catalysed reporter deposition for the identification of marine bacteria. Appl Environ Microbiol 68: 3094-3101.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 3094-3101
-
-
Pernthaler, A.1
Pernthaler, J.2
Amann, R.3
-
33
-
-
21244484895
-
Sensitive multi-color fluorescence in situ hybridization for the identification of environmental microorganisms
-
Kowalchuk, G.E.A. (ed.). Dordrecht, the Netherlands: Kluwer Academic Press
-
Pernthaler, A., Pernthaler, J., and Amann, R. (2004) Sensitive multi-color fluorescence in situ hybridization for the identification of environmental microorganisms. In Molecular Microbial Ecology Manual. Kowalchuk, G.E.A. (ed.). Dordrecht, the Netherlands: Kluwer Academic Press, pp. 711-726.
-
(2004)
Molecular Microbial Ecology Manual
, pp. 711-726
-
-
Pernthaler, A.1
Pernthaler, J.2
Amann, R.3
-
34
-
-
84986870589
-
The use of DAPI for identifying and counting acquatic microflora
-
Porter, K.G., and Feig, Y.S. (1980) The use of DAPI for identifying and counting acquatic microflora. Limnol Oceanogr 25: 943-948.
-
(1980)
Limnol Oceanogr
, vol.25
, pp. 943-948
-
-
Porter, K.G.1
Feig, Y.S.2
-
35
-
-
0344256422
-
Bacterial uptake of DOM released from P-limited phytoplankton
-
Puddu, A., Zoppini, A., Fazi, S., Rosati, M., Amalfitano, S., and Magaletti, E. (2003) Bacterial uptake of DOM released from P-limited phytoplankton. FEMS Microbiol Ecol 46: 257-268.
-
(2003)
FEMS Microbiol Ecol
, vol.46
, pp. 257-268
-
-
Puddu, A.1
Zoppini, A.2
Fazi, S.3
Rosati, M.4
Amalfitano, S.5
Magaletti, E.6
-
36
-
-
0036130207
-
2-induced changes in the chemistry of quaking aspen (Populus tremuloides Michaux) leaf litter: Subsequent mass loss and microbial response in stream ecosystem
-
2-induced changes in the chemistry of quaking aspen (Populus tremuloides Michaux) leaf litter: subsequent mass loss and microbial response in stream ecosystem. J N Am Benthol Soc 21: 16-27.
-
(2002)
J N Am Benthol Soc
, vol.21
, pp. 16-27
-
-
Rier, S.T.1
Tuchman, N.C.2
Wetzel, R.G.3
Teeri, J.A.4
-
37
-
-
0342711280
-
Improved sensitivity of whole-cell hybridization by the combination of horseradish peroxidase-labeled oligonucleotides and tyramide signal amplification
-
Schönhuber, W., Fuchs, B., Juretschko, S., and Amann, R. (1997) Improved sensitivity of whole-cell hybridization by the combination of horseradish peroxidase-labeled oligonucleotides and tyramide signal amplification. Appl Environ Microbiol 63: 3268-3273.
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 3268-3273
-
-
Schönhuber, W.1
Fuchs, B.2
Juretschko, S.3
Amann, R.4
-
38
-
-
0037882329
-
An Improved protocol for the quantification of freshwater Actinobacteria by fluorescence in situ hybridization
-
Sekar, R., Pernthaler, A., Pernthaler, J., Warnecke, F., Posch, T., and Amann, R. (2003) An Improved protocol for the quantification of freshwater Actinobacteria by fluorescence in situ hybridization. Appl Environ Microbiol 69: 2928-2935.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 2928-2935
-
-
Sekar, R.1
Pernthaler, A.2
Pernthaler, J.3
Warnecke, F.4
Posch, T.5
Amann, R.6
-
39
-
-
0037178039
-
Microbial ecology of organic aggregates in aquatic ecosystems
-
Simon, M., Grossart, H.P., Schweitzer, B., and Ploug, H. (2002) Microbial ecology of organic aggregates in aquatic ecosystems. Aquat Microb Ecol 28: 175-211.
-
(2002)
Aquat Microb Ecol
, vol.28
, pp. 175-211
-
-
Simon, M.1
Grossart, H.P.2
Schweitzer, B.3
Ploug, H.4
-
40
-
-
0033758417
-
Identification and characterization of ecologically significant prokaryotes in the sediment of freshwater lakes: Molecular and cultivation studies
-
Spring, S., Schulze, R., Overmann, J., and Schleifer, K.H. (2000) Identification and characterization of ecologically significant prokaryotes in the sediment of freshwater lakes: molecular and cultivation studies. FEMS Microbiol Rev 24: 573-590.
-
(2000)
FEMS Microbiol Rev
, vol.24
, pp. 573-590
-
-
Spring, S.1
Schulze, R.2
Overmann, J.3
Schleifer, K.H.4
-
41
-
-
0001820581
-
Improved sample preparation for enumeration of aggregated aquatic substrate bacteria
-
Kemp, P.F., Sherr, B.F., Sherr, E.B., and Cole, J.J. (eds). Boca Raton, USA: Lewis Publishers
-
Velji, M.I., and Albright, L.J. (1993) Improved sample preparation for enumeration of aggregated aquatic substrate bacteria. In Handbook of Methods in Aquatic Microbial Ecology. Kemp, P.F., Sherr, B.F., Sherr, E.B., and Cole, J.J. (eds). Boca Raton, USA: Lewis Publishers, pp. 139-142.
-
(1993)
Handbook of Methods in Aquatic Microbial Ecology
, pp. 139-142
-
-
Velji, M.I.1
Albright, L.J.2
-
42
-
-
0037736714
-
Analysis of the microbial functional diversity within water stressed soil communities by flow cytometric analysis and CTC+ cell sorting
-
Whiteley, A.S., Griffiths, R.I., and Bailey, M.J. (2003) Analysis of the microbial functional diversity within water stressed soil communities by flow cytometric analysis and CTC+ cell sorting. J Microbiol Methods 54: 257-267.
-
(2003)
J Microbiol Methods
, vol.54
, pp. 257-267
-
-
Whiteley, A.S.1
Griffiths, R.I.2
Bailey, M.J.3
-
43
-
-
0032076907
-
Distinguishing between living and nonliving bacteria: Evaluation of the vital stain propidium iodide and its combined use with molecular probes in aquatic samples
-
Williams, S.C., Hong, Y., Danavall, D.C.A., Howard-Jones, M.H., Gibson, D., Frischer, M.E., and Verity, P.G. (1998) Distinguishing between living and nonliving bacteria: evaluation of the vital stain propidium iodide and its combined use with molecular probes in aquatic samples. J Microbiol Methods 32: 225-236.
-
(1998)
J Microbiol Methods
, vol.32
, pp. 225-236
-
-
Williams, S.C.1
Hong, Y.2
Danavall, D.C.A.3
Howard-Jones, M.H.4
Gibson, D.5
Frischer, M.E.6
Verity, P.G.7
-
44
-
-
0344255826
-
Microbial diversity and functional characterization of sediments from reservoirs of different trophic state
-
Wobus, A., Bleul, C., Maassen, S., Scheerer, C., Schuppler, M., Jacobs, E., and Roske, I. (2003) Microbial diversity and functional characterization of sediments from reservoirs of different trophic state. FEMS Microbiol Ecol 46: 331-347.
-
(2003)
FEMS Microbiol Ecol
, vol.46
, pp. 331-347
-
-
Wobus, A.1
Bleul, C.2
Maassen, S.3
Scheerer, C.4
Schuppler, M.5
Jacobs, E.6
Roske, I.7
|