메뉴 건너뛰기




Volumn 53, Issue 5, 2014, Pages 862-871

Structure of human PIR1, an atypical dual-specificity phosphatase

Author keywords

[No Author keywords available]

Indexed keywords

CATALYTIC DOMAIN; CRYSTALLOGRAPHY, X-RAY; DUAL-SPECIFICITY PHOSPHATASES; HUMANS; KINETICS; MOLECULAR DOCKING SIMULATION; MUTAGENESIS, SITE-DIRECTED; PROTEIN CONFORMATION; PROTEIN STABILITY;

EID: 84894153787     PISSN: 00062960     EISSN: 15204995     Source Type: Journal    
DOI: 10.1021/bi401240x     Document Type: Article
Times cited : (14)

References (49)
  • 2
    • 33750299450 scopus 로고    scopus 로고
    • Protein tyrosine phosphatases: From genes, to function, to disease
    • Tonks, N. K. (2006) Protein tyrosine phosphatases: From genes, to function, to disease Nat. Rev. Mol. Cell Biol. 7, 833-846
    • (2006) Nat. Rev. Mol. Cell Biol. , vol.7 , pp. 833-846
    • Tonks, N.K.1
  • 3
    • 0025865103 scopus 로고
    • A Tyr/Ser protein phosphatase encoded by vaccinia virus
    • Guan, K. L., Broyles, S. S., and Dixon, J. E. (1991) A Tyr/Ser protein phosphatase encoded by vaccinia virus Nature 350, 359-362
    • (1991) Nature , vol.350 , pp. 359-362
    • Guan, K.L.1    Broyles, S.S.2    Dixon, J.E.3
  • 4
    • 62149114138 scopus 로고    scopus 로고
    • Dual-specificity phosphatases: Critical regulators with diverse cellular targets
    • Patterson, K. I., Brummer, T., O'Brien, P. M., and Daly, R. J. (2009) Dual-specificity phosphatases: Critical regulators with diverse cellular targets Biochem. J. 418, 475-489
    • (2009) Biochem. J. , vol.418 , pp. 475-489
    • Patterson, K.I.1    Brummer, T.2    O'Brien, P.M.3    Daly, R.J.4
  • 5
    • 84881087345 scopus 로고    scopus 로고
    • Protein tyrosine phosphatases: Structure, function, and implication in human disease
    • Tautz, L., Critton, D. A., and Grotegut, S. (2013) Protein tyrosine phosphatases: Structure, function, and implication in human disease Methods Mol. Biol. 1053, 179-221
    • (2013) Methods Mol. Biol. , vol.1053 , pp. 179-221
    • Tautz, L.1    Critton, D.A.2    Grotegut, S.3
  • 7
    • 44049092771 scopus 로고    scopus 로고
    • Structure of human dual specificity protein phosphatase 23, VHZ, enzyme-substrate/product complex
    • Agarwal, R., Burley, S. K., and Swaminathan, S. (2008) Structure of human dual specificity protein phosphatase 23, VHZ, enzyme-substrate/product complex J. Biol. Chem. 283, 8946-8953
    • (2008) J. Biol. Chem. , vol.283 , pp. 8946-8953
    • Agarwal, R.1    Burley, S.K.2    Swaminathan, S.3
  • 8
    • 79955652366 scopus 로고    scopus 로고
    • Structure of human dual-specificity phosphatase 27 at 2.38 Å resolution
    • Lountos, G. T., Tropea, J. E., and Waugh, D. S. (2011) Structure of human dual-specificity phosphatase 27 at 2.38 Å resolution Acta Crystallogr. D67, 471-479
    • (2011) Acta Crystallogr. , vol.67 , pp. 471-479
    • Lountos, G.T.1    Tropea, J.E.2    Waugh, D.S.3
  • 10
    • 79961063234 scopus 로고    scopus 로고
    • Structural and functional analysis of PTPMT1, a phosphatase required for cardiolipin synthesis
    • Xiao, J., Engel, J. L., Zhang, J., Chen, M. J., Manning, G., and Dixon, J. E. (2011) Structural and functional analysis of PTPMT1, a phosphatase required for cardiolipin synthesis Proc. Natl. Acad. Sci. U.S.A. 108, 11860-11865
    • (2011) Proc. Natl. Acad. Sci. U.S.A. , vol.108 , pp. 11860-11865
    • Xiao, J.1    Engel, J.L.2    Zhang, J.3    Chen, M.J.4    Manning, G.5    Dixon, J.E.6
  • 11
    • 0032493642 scopus 로고    scopus 로고
    • PIR1, a novel phosphatase that exhibits high affinity to RNA·ribonucleoprotein complexes
    • Yuan, Y., Li, D. M., and Sun, H. (1998) PIR1, a novel phosphatase that exhibits high affinity to RNA·ribonucleoprotein complexes J. Biol. Chem. 273, 20347-20353
    • (1998) J. Biol. Chem. , vol.273 , pp. 20347-20353
    • Yuan, Y.1    Li, D.M.2    Sun, H.3
  • 12
    • 0032544081 scopus 로고    scopus 로고
    • A protein tyrosine phosphatase-like protein from baculovirus has RNA 5′-triphosphatase and diphosphatase activities
    • Takagi, T., Taylor, G. S., Kusakabe, T., Charbonneau, H., and Buratowski, S. (1998) A protein tyrosine phosphatase-like protein from baculovirus has RNA 5′-triphosphatase and diphosphatase activities Proc. Natl. Acad. Sci. U.S.A. 95, 9808-9812
    • (1998) Proc. Natl. Acad. Sci. U.S.A. , vol.95 , pp. 9808-9812
    • Takagi, T.1    Taylor, G.S.2    Kusakabe, T.3    Charbonneau, H.4    Buratowski, S.5
  • 13
    • 0033523023 scopus 로고    scopus 로고
    • Human PIR1 of the protein-tyrosine phosphatase superfamily has RNA 5′-triphosphatase and diphosphatase activities
    • Deshpande, T., Takagi, T., Hao, L., Buratowski, S., and Charbonneau, H. (1999) Human PIR1 of the protein-tyrosine phosphatase superfamily has RNA 5′-triphosphatase and diphosphatase activities J. Biol. Chem. 274, 16590-16594
    • (1999) J. Biol. Chem. , vol.274 , pp. 16590-16594
    • Deshpande, T.1    Takagi, T.2    Hao, L.3    Buratowski, S.4    Charbonneau, H.5
  • 14
    • 72949102441 scopus 로고    scopus 로고
    • Isolation and characterization of DUSP11, a novel p53 target gene
    • Caprara, G., Zamponi, R., Melixetian, M., and Helin, K. (2009) Isolation and characterization of DUSP11, a novel p53 target gene J. Cell. Mol. Med. 13, 2158-2170
    • (2009) J. Cell. Mol. Med. , vol.13 , pp. 2158-2170
    • Caprara, G.1    Zamponi, R.2    Melixetian, M.3    Helin, K.4
  • 15
  • 18
    • 34547616468 scopus 로고    scopus 로고
    • Role of gene 10 protein in the hierarchical assembly of the bacteriophage P22 portal vertex structure
    • Olia, A. S., Bhardwaj, A., Joss, L., Casjens, S., and Cingolani, G. (2007) Role of gene 10 protein in the hierarchical assembly of the bacteriophage P22 portal vertex structure Biochemistry 46, 8776-8784
    • (2007) Biochemistry , vol.46 , pp. 8776-8784
    • Olia, A.S.1    Bhardwaj, A.2    Joss, L.3    Casjens, S.4    Cingolani, G.5
  • 19
    • 34447283819 scopus 로고    scopus 로고
    • Domain organization and polarity of tail needle GP26 in the portal vertex structure of bacteriophage P22
    • Bhardwaj, A., Olia, A. S., Walker-Kopp, N., and Cingolani, G. (2007) Domain organization and polarity of tail needle GP26 in the portal vertex structure of bacteriophage P22 J. Mol. Biol. 371, 374-387
    • (2007) J. Mol. Biol. , vol.371 , pp. 374-387
    • Bhardwaj, A.1    Olia, A.S.2    Walker-Kopp, N.3    Cingolani, G.4
  • 20
    • 0031059866 scopus 로고    scopus 로고
    • Processing of x-ray diffraction data collected in oscillation mode
    • Otwinowski, Z. and Minor, W. (1997) Processing of X-ray Diffraction Data Collected in Oscillation Mode Methods Enzymol. 276, 307-326
    • (1997) Methods Enzymol. , vol.276 , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 21
    • 24044463223 scopus 로고    scopus 로고
    • Crystal structure of baculovirus RNA triphosphatase complexed with phosphate
    • Changela, A., Martins, A., Shuman, S., and Mondragon, A. (2005) Crystal structure of baculovirus RNA triphosphatase complexed with phosphate J. Biol. Chem. 280, 17848-17856
    • (2005) J. Biol. Chem. , vol.280 , pp. 17848-17856
    • Changela, A.1    Martins, A.2    Shuman, S.3    Mondragon, A.4
  • 23
    • 13244281317 scopus 로고    scopus 로고
    • Coot: Model-building tools for molecular graphics
    • Emsley, P. and Cowtan, K. (2004) Coot: Model-building tools for molecular graphics Acta Crystallogr. D60, 2126-2132
    • (2004) Acta Crystallogr. , vol.60 , pp. 2126-2132
    • Emsley, P.1    Cowtan, K.2
  • 26
    • 0028103275 scopus 로고
    • The CCP4 suite: Programs for protein crystallography
    • Collaborative Computational Project, Number 4
    • Collaborative Computational Project, Number 4 (1994) The CCP4 suite: Programs for protein crystallography Acta Crystallogr. D50, 760-763
    • (1994) Acta Crystallogr. , vol.50 , pp. 760-763
  • 27
    • 3242886771 scopus 로고    scopus 로고
    • PDB2PQR: An automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations
    • Dolinsky, T. J., Nielsen, J. E., McCammon, J. A., and Baker, N. A. (2004) PDB2PQR: An automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations Nucleic Acids Res. 32, W665-W667
    • (2004) Nucleic Acids Res. , vol.32
    • Dolinsky, T.J.1    Nielsen, J.E.2    McCammon, J.A.3    Baker, N.A.4
  • 29
    • 0027995683 scopus 로고
    • Detection, delineation, measurement and display of cavities in macromolecular structures
    • Kleywegt, G. J. and Jones, T. A. (1994) Detection, delineation, measurement and display of cavities in macromolecular structures Acta Crystallogr. D50, 178-185
    • (1994) Acta Crystallogr. , vol.50 , pp. 178-185
    • Kleywegt, G.J.1    Jones, T.A.2
  • 30
    • 61449223647 scopus 로고    scopus 로고
    • Structural plasticity of the phage P22 tail needle gp26 probed with xenon gas
    • Olia, A. S., Casjens, S., and Cingolani, G. (2009) Structural plasticity of the phage P22 tail needle gp26 probed with xenon gas Protein Sci. 18, 537-548
    • (2009) Protein Sci. , vol.18 , pp. 537-548
    • Olia, A.S.1    Casjens, S.2    Cingolani, G.3
  • 32
    • 0028922586 scopus 로고
    • LIGPLOT: A program to generate schematic diagrams of protein-ligand interactions
    • Wallace, A. C., Laskowski, R. A., and Thornton, J. M. (1995) LIGPLOT: A program to generate schematic diagrams of protein-ligand interactions Protein Eng. 8, 127-134
    • (1995) Protein Eng. , vol.8 , pp. 127-134
    • Wallace, A.C.1    Laskowski, R.A.2    Thornton, J.M.3
  • 33
    • 76149120388 scopus 로고    scopus 로고
    • AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading
    • Trott, O. and Olson, A. J. (2009) AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading J. Comput. Chem. 31, 455-461
    • (2009) J. Comput. Chem. , vol.31 , pp. 455-461
    • Trott, O.1    Olson, A.J.2
  • 34
    • 77955391393 scopus 로고    scopus 로고
    • The HADDOCK web server for data-driven biomolecular docking
    • de Vries, S. J., van Dijk, M., and Bonvin, A. M. (2010) The HADDOCK web server for data-driven biomolecular docking Nat. Protoc. 5, 883-897
    • (2010) Nat. Protoc. , vol.5 , pp. 883-897
    • De Vries, S.J.1    Van Dijk, M.2    Bonvin, A.M.3
  • 35
    • 33749620777 scopus 로고    scopus 로고
    • Laforin, a dual specificity phosphatase that dephosphorylates complex carbohydrates
    • Worby, C. A., Gentry, M. S., and Dixon, J. E. (2006) Laforin, a dual specificity phosphatase that dephosphorylates complex carbohydrates J. Biol. Chem. 281, 30412-30418
    • (2006) J. Biol. Chem. , vol.281 , pp. 30412-30418
    • Worby, C.A.1    Gentry, M.S.2    Dixon, J.E.3
  • 36
    • 79954592899 scopus 로고    scopus 로고
    • Dimerization of Vaccinia virus VH1 is essential for dephosphorylation of STAT1 at tyrosine 701
    • Koksal, A. C. and Cingolani, G. (2011) Dimerization of Vaccinia virus VH1 is essential for dephosphorylation of STAT1 at tyrosine 701 J. Biol. Chem. 286, 14373-14382
    • (2011) J. Biol. Chem. , vol.286 , pp. 14373-14382
    • Koksal, A.C.1    Cingolani, G.2
  • 37
    • 79960915158 scopus 로고    scopus 로고
    • The importin β binding domain as a master regulator of nucleocytoplasmic transport
    • Lott, K. and Cingolani, G. (2011) The importin β binding domain as a master regulator of nucleocytoplasmic transport Biochim. Biophys. Acta 1813, 1578-1592
    • (2011) Biochim. Biophys. Acta , vol.1813 , pp. 1578-1592
    • Lott, K.1    Cingolani, G.2
  • 38
    • 65649134727 scopus 로고    scopus 로고
    • Dimeric quaternary structure of the prototypical dual specificity phosphatase VH1
    • Koksal, A. C., Nardozzi, J. D., and Cingolani, G. (2009) Dimeric quaternary structure of the prototypical dual specificity phosphatase VH1 J. Biol. Chem. 284, 10129-10137
    • (2009) J. Biol. Chem. , vol.284 , pp. 10129-10137
    • Koksal, A.C.1    Nardozzi, J.D.2    Cingolani, G.3
  • 39
    • 84873371088 scopus 로고    scopus 로고
    • Atomic structure of dual-specificity phosphatase 26, a novel p53 phosphatase
    • Lokareddy, R. K., Bhardwaj, A., and Cingolani, G. (2013) Atomic structure of dual-specificity phosphatase 26, a novel p53 phosphatase Biochemistry 52, 938-948
    • (2013) Biochemistry , vol.52 , pp. 938-948
    • Lokareddy, R.K.1    Bhardwaj, A.2    Cingolani, G.3
  • 40
    • 0027440362 scopus 로고
    • Protein structure comparison by alignment of distance matrices
    • Holm, L. and Sander, C. (1993) Protein structure comparison by alignment of distance matrices J. Mol. Biol. 233, 123-138
    • (1993) J. Mol. Biol. , vol.233 , pp. 123-138
    • Holm, L.1    Sander, C.2
  • 41
    • 0035873620 scopus 로고    scopus 로고
    • Structure and mechanism of the RNA triphosphatase component of mammalian mRNA capping enzyme
    • Changela, A., Ho, C. K., Martins, A., Shuman, S., and Mondragon, A. (2001) Structure and mechanism of the RNA triphosphatase component of mammalian mRNA capping enzyme EMBO J. 20, 2575-2586
    • (2001) EMBO J. , vol.20 , pp. 2575-2586
    • Changela, A.1    Ho, C.K.2    Martins, A.3    Shuman, S.4    Mondragon, A.5
  • 42
    • 0035413604 scopus 로고    scopus 로고
    • Molecular reactions of protein phosphatases: Insights from structure and chemistry
    • Jackson, M. D. and Denu, J. M. (2001) Molecular reactions of protein phosphatases: Insights from structure and chemistry Chem. Rev. 101, 2313-2340
    • (2001) Chem. Rev. , vol.101 , pp. 2313-2340
    • Jackson, M.D.1    Denu, J.M.2
  • 43
    • 13844312725 scopus 로고    scopus 로고
    • Dual specificity protein phosphatases: Therapeutic targets for cancer and Alzheimer's disease
    • Ducruet, A. P., Vogt, A., Wipf, P., and Lazo, J. S. (2005) Dual specificity protein phosphatases: Therapeutic targets for cancer and Alzheimer's disease Annu. Rev. Pharmacol. Toxicol. 45, 725-750
    • (2005) Annu. Rev. Pharmacol. Toxicol. , vol.45 , pp. 725-750
    • Ducruet, A.P.1    Vogt, A.2    Wipf, P.3    Lazo, J.S.4
  • 44
    • 71249131319 scopus 로고    scopus 로고
    • Phosphatases as targets for cancer treatment
    • Lazo, J. S. and Wipf, P. (2009) Phosphatases as targets for cancer treatment Curr. Opin. Invest. Drugs 10, 1297-1304
    • (2009) Curr. Opin. Invest. Drugs , vol.10 , pp. 1297-1304
    • Lazo, J.S.1    Wipf, P.2
  • 46
    • 0029975476 scopus 로고    scopus 로고
    • Crystal structure of the dual specificity protein phosphatase VHR
    • Yuvaniyama, J., Denu, J. M., Dixon, J. E., and Saper, M. A. (1996) Crystal structure of the dual specificity protein phosphatase VHR Science 272, 1328-1331
    • (1996) Science , vol.272 , pp. 1328-1331
    • Yuvaniyama, J.1    Denu, J.M.2    Dixon, J.E.3    Saper, M.A.4
  • 47
    • 0029066496 scopus 로고
    • Structural basis for phosphotyrosine peptide recognition by protein tyrosine phosphatase 1B
    • Jia, Z., Barford, D., Flint, A. J., and Tonks, N. K. (1995) Structural basis for phosphotyrosine peptide recognition by protein tyrosine phosphatase 1B Science 268, 1754-1758
    • (1995) Science , vol.268 , pp. 1754-1758
    • Jia, Z.1    Barford, D.2    Flint, A.J.3    Tonks, N.K.4
  • 49
    • 0034634475 scopus 로고    scopus 로고
    • Mechanism of phosphoanhydride cleavage by baculovirus phosphatase
    • Martins, A. and Shuman, S. (2000) Mechanism of phosphoanhydride cleavage by baculovirus phosphatase J. Biol. Chem. 275, 35070-35076
    • (2000) J. Biol. Chem. , vol.275 , pp. 35070
    • Martins, A.1    Shuman, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.