-
1
-
-
84856213807
-
Molecular Recognition of a Single Sphingolipid Species by a Protein's Transmembrane Domain
-
Contreras, F.-X.; Ernst, A. M.; Haberkant, P.; Björkholm, P.; Lindahl, E.; Gönen, B.; Tischer, C.; Elofsson, A.; von Heijne, G.; Thiele, C. Molecular Recognition of a Single Sphingolipid Species by a Protein's Transmembrane Domain Nature 2012, 481, 525-529
-
(2012)
Nature
, vol.481
, pp. 525-529
-
-
Contreras, F.-X.1
Ernst, A.M.2
Haberkant, P.3
Björkholm, P.4
Lindahl, E.5
Gönen, B.6
Tischer, C.7
Elofsson, A.8
Von Heijne, G.9
Thiele, C.10
-
2
-
-
38549173564
-
Membrane Lipids: Where They Are and How They Behave
-
van Meer, G.; Voelker, D. R.; Feigenson, G. W. Membrane Lipids: Where They Are and How They Behave Nat. Rev. Mol. Cell Biol. 2008, 9, 112-124
-
(2008)
Nat. Rev. Mol. Cell Biol.
, vol.9
, pp. 112-124
-
-
Van Meer, G.1
Voelker, D.R.2
Feigenson, G.W.3
-
4
-
-
28444437064
-
Membranes Are More Mosaic Than Fluid
-
Engelman, D. M. Membranes Are More Mosaic Than Fluid Nature 2005, 438, 578-580
-
(2005)
Nature
, vol.438
, pp. 578-580
-
-
Engelman, D.M.1
-
5
-
-
38549092474
-
Membrane Recognition by Phospholipid-Binding Domains
-
Lemmon, M. A. Membrane Recognition by Phospholipid-Binding Domains Nat. Rev. Mol. Cell Biol. 2008, 9, 99-111
-
(2008)
Nat. Rev. Mol. Cell Biol.
, vol.9
, pp. 99-111
-
-
Lemmon, M.A.1
-
6
-
-
66349132474
-
Lipid Binding Domains: More Than Simple Lipid Effectors
-
Stahelin, R. V. Lipid Binding Domains: More Than Simple Lipid Effectors J. Lipid Res. 2009, 50, S299-S304
-
(2009)
J. Lipid Res.
, vol.50
-
-
Stahelin, R.V.1
-
7
-
-
84920160782
-
-
In; Frishman, D. Valecia, A. Springer-Verlag: Vienna, Austria, Chapter 5.2
-
Casadio, R.; Fariselli, P.; Martelli, P. L.; Pierleoni, A.; Rossi, I.; von Heijne, G. In Modern Genome Annotation: The BioSapiens Network; Frishman, D.; Valecia, A., Eds.; Springer-Verlag: Vienna, Austria, 2008; Chapter 5.2, pp 309-328.
-
(2008)
Modern Genome Annotation: The BioSapiens Network
, pp. 309-328
-
-
Casadio, R.1
Fariselli, P.2
Martelli, P.L.3
Pierleoni, A.4
Rossi, I.5
Von Heijne, G.6
-
8
-
-
84863582850
-
Emerging Methodologies to Investigate Lipidprotein Interactions
-
Scott, J. L.; Musselman, C. A.; Adu-Gyamfi, E.; Kutateladze, T. G.; Stahelin, R. V. Emerging Methodologies to Investigate Lipidprotein Interactions Integr. Biol. 2012, 4, 247-258
-
(2012)
Integr. Biol.
, vol.4
, pp. 247-258
-
-
Scott, J.L.1
Musselman, C.A.2
Adu-Gyamfi, E.3
Kutateladze, T.G.4
Stahelin, R.V.5
-
9
-
-
66249083118
-
Emerging Roles for Lipids in Shaping Membrane-Protein Function
-
Phillips, R.; Ursell, T.; Wiggins, P.; Sens, P. Emerging Roles for Lipids in Shaping Membrane-Protein Function Nature 2009, 459, 379-384
-
(2009)
Nature
, vol.459
, pp. 379-384
-
-
Phillips, R.1
Ursell, T.2
Wiggins, P.3
Sens, P.4
-
10
-
-
27344436659
-
Scalable Molecular Dynamics with NAMD
-
Phillips, J. C.; Braun, R.; Wang, W.; Gumbart, J.; Tajkhorshid, E.; Villa, E.; Chipot, C.; Skeel, R. D.; Kale, L.; Schulten, K. Scalable Molecular Dynamics with NAMD J. Comput. Chem. 2005, 26, 1781-1802
-
(2005)
J. Comput. Chem.
, vol.26
, pp. 1781-1802
-
-
Phillips, J.C.1
Braun, R.2
Wang, W.3
Gumbart, J.4
Tajkhorshid, E.5
Villa, E.6
Chipot, C.7
Skeel, R.D.8
Kale, L.9
Schulten, K.10
-
11
-
-
0031438285
-
A Computer Perspective of Membranes: Molecular Dynamics Studies of Lipid Bilayer Systems
-
Tieleman, D. P.; Marrink, S. J.; Berendsen, H. J. C. A Computer Perspective of Membranes: Molecular Dynamics Studies of Lipid Bilayer Systems Biochim. Biophys. Acta 1997, 1331, 235-270
-
(1997)
Biochim. Biophys. Acta
, vol.1331
, pp. 235-270
-
-
Tieleman, D.P.1
Marrink, S.J.2
Berendsen, H.J.C.3
-
12
-
-
37549054088
-
2+ in Membrane Binding of Blood Coagulation Factors
-
2+ in Membrane Binding of Blood Coagulation Factors Structure 2008, 16, 72-81
-
(2008)
Structure
, vol.16
, pp. 72-81
-
-
Ohkubo, Y.Z.1
Tajkhorshid, E.2
-
13
-
-
79959548059
-
Molecular Determinants of Phospholipid Synergy in Blood Clotting
-
Tavoosi, N.; Davis-Harrison, R. L.; Pogorelov, T. V.; Ohkubo, Y. Z.; Arcario, M. J.; Clay, M. C.; Rienstra, C. M.; Tajkhorshid, E.; Morrissey, J. H. Molecular Determinants of Phospholipid Synergy in Blood Clotting J. Biol. Chem. 2011, 286, 23247-23253
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 23247-23253
-
-
Tavoosi, N.1
Davis-Harrison, R.L.2
Pogorelov, T.V.3
Ohkubo, Y.Z.4
Arcario, M.J.5
Clay, M.C.6
Rienstra, C.M.7
Tajkhorshid, E.8
Morrissey, J.H.9
-
14
-
-
84860451216
-
Accelerating Membrane Insertion of Peripheral Proteins with a Novel Membrane Mimetic Model
-
Ohkubo, Y. Z.; Pogorelov, T. V.; Arcario, M. J.; Christensen, G. A.; Tajkhorshid, E. Accelerating Membrane Insertion of Peripheral Proteins with a Novel Membrane Mimetic Model Biophys. J. 2012, 102, 2130-2139
-
(2012)
Biophys. J.
, vol.102
, pp. 2130-2139
-
-
Ohkubo, Y.Z.1
Pogorelov, T.V.2
Arcario, M.J.3
Christensen, G.A.4
Tajkhorshid, E.5
-
15
-
-
84894099024
-
A Microscopic View of Phospholipid Insertion into Biological Membranes
-
10.1021/jp409854w
-
Vermaas, J. V.; Tajkhorshid, E. A Microscopic View of Phospholipid Insertion into Biological Membranes J. Phys. Chem. B 2013, 10.1021/jp409854w
-
(2013)
J. Phys. Chem. B
-
-
Vermaas, J.V.1
Tajkhorshid, E.2
-
16
-
-
84878953386
-
Characterizing the Membrane-Bound State of Cytochrome P450 3A4: Structure, Depth of Insertion, and Orientation
-
Baylon, J. L.; Lenov, I. L.; Sligar, S. G.; Tajkhorshid, E. Characterizing the Membrane-Bound State of Cytochrome P450 3A4: Structure, Depth of Insertion, and Orientation J. Am. Chem. Soc. 2013, 135, 8542-8551
-
(2013)
J. Am. Chem. Soc.
, vol.135
, pp. 8542-8551
-
-
Baylon, J.L.1
Lenov, I.L.2
Sligar, S.G.3
Tajkhorshid, E.4
-
17
-
-
84894053589
-
Glycophorin A Helix Insertion, Positioning, and Dimerization in Model Membranes
-
Pogorelov, T. V.; Tajkhoshid, E. Glycophorin A Helix Insertion, Positioning, and Dimerization in Model Membranes Biophys. J. 2012, 102, 413a
-
(2012)
Biophys. J.
, vol.102
-
-
Pogorelov, T.V.1
Tajkhoshid, E.2
-
18
-
-
84894035823
-
Capturing Spontaneous Membrane Insertion and Membrane-Induced Conformational Changes of Talin at an Atomic Resolution
-
Arcario, M. J.; Tajkhoshid, E. Capturing Spontaneous Membrane Insertion and Membrane-Induced Conformational Changes of Talin at an Atomic Resolution Biophys. J. 2012, 102, 301a
-
(2012)
Biophys. J.
, vol.102
-
-
Arcario, M.J.1
Tajkhoshid, E.2
-
19
-
-
84894069570
-
Conformational Dynamics of Membrane-Bound α -Synuclein in a Highly Mobile Membrane Mimetic
-
Vermaas, J. V.; Tajkhoshid, E. Conformational Dynamics of Membrane-Bound α -Synuclein in a Highly Mobile Membrane Mimetic Biophys. J. 2012, 102, 493a
-
(2012)
Biophys. J.
, vol.102
-
-
Vermaas, J.V.1
Tajkhoshid, E.2
-
20
-
-
84894024535
-
Characterizing Structure and Dynamics of Calcium-Induced Clusters of Phosphatidylserine in Mixed Lipid Bilayers
-
Pogorelov, T. V.; Ohkubo, Y. Z.; Arcario, M. J.; Tajkhoshid, E. Characterizing Structure and Dynamics of Calcium-Induced Clusters of Phosphatidylserine in Mixed Lipid Bilayers Biophys. J. 2011, 100, 172a
-
(2011)
Biophys. J.
, vol.100
-
-
Pogorelov, T.V.1
Ohkubo, Y.Z.2
Arcario, M.J.3
Tajkhoshid, E.4
-
21
-
-
33845280446
-
Comparing the Polarities of the Amino Acids: Side Chain Distribution Coefficients between the Vapor Phase, Cyclohexane, 1-Octanol, and Neutral Aqueous Solution
-
Radzicka, A.; Wolfenden, R. Comparing the Polarities of the Amino Acids: Side Chain Distribution Coefficients Between the Vapor Phase, Cyclohexane, 1-Octanol, and Neutral Aqueous Solution Biochemistry 1988, 27, 1664-1670
-
(1988)
Biochemistry
, vol.27
, pp. 1664-1670
-
-
Radzicka, A.1
Wolfenden, R.2
-
22
-
-
43649094583
-
Distribution of Amino Acids in a Lipid Bilayer from Computer Simulations
-
MacCallum, J. L.; Bennett, W. F. D.; Tieleman, D. P. Distribution of Amino Acids in a Lipid Bilayer from Computer Simulations Biophys. J. 2008, 94, 3393-3404
-
(2008)
Biophys. J.
, vol.94
, pp. 3393-3404
-
-
Maccallum, J.L.1
Bennett, W.F.D.2
Tieleman, D.P.3
-
23
-
-
49449113010
-
The MARTINI Coarse Grained Forcefield: Extension to Proteins
-
Monticelli, L.; Kandasamy, S. K.; Periole, X.; Larson, R. G.; Tieleman, D. P.; Marrink, S. J. The MARTINI Coarse Grained Forcefield: Extension to Proteins J. Chem. Theory Comput. 2008, 4, 819-834
-
(2008)
J. Chem. Theory Comput.
, vol.4
, pp. 819-834
-
-
Monticelli, L.1
Kandasamy, S.K.2
Periole, X.3
Larson, R.G.4
Tieleman, D.P.5
Marrink, S.J.6
-
24
-
-
0030264744
-
Permeation Process of Small Molecules Across Lipid Membranes Studied by Molecular Dynamics Simulations
-
Marrink, S. J.; Berendsen, H. J. C. Permeation Process of Small Molecules Across Lipid Membranes Studied by Molecular Dynamics Simulations J. Phys. Chem. 1996, 100, 16729-38
-
(1996)
J. Phys. Chem.
, vol.100
, pp. 16729-16738
-
-
Marrink, S.J.1
Berendsen, H.J.C.2
-
25
-
-
76249087938
-
CHARMM General Force Field: A Force Field for Drug-like Molecules Compatible with the CHARMM All-Atom Additive Biological Force Fields
-
Vanommeslaeghe, K.; Hatcher, E.; Acharya, C.; Kundu, S.; Zhong, S.; Shim, J.; Darian, E.; Guvench, O.; Lopes, P.; Vorobyov, I. CHARMM General Force Field: A Force Field for Drug-like Molecules Compatible with the CHARMM All-Atom Additive Biological Force Fields J. Comput. Chem. 2010, 31, 671-690
-
(2010)
J. Comput. Chem.
, vol.31
, pp. 671-690
-
-
Vanommeslaeghe, K.1
Hatcher, E.2
Acharya, C.3
Kundu, S.4
Zhong, S.5
Shim, J.6
Darian, E.7
Guvench, O.8
Lopes, P.9
Vorobyov, I.10
-
26
-
-
0041784950
-
All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins
-
MacKerell, A. D., Jr.; Bashford, D.; Bellott, M.; Dunbrack, R. L., Jr.; Evanseck, J. D.; Field, M. J.; Fischer, S.; Gao, J.; Guo, H.; Ha, S. All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins J. Phys. Chem. B 1998, 102, 3586-3616
-
(1998)
J. Phys. Chem. B
, vol.102
, pp. 3586-3616
-
-
Mackerell Jr., A.D.1
Bashford, D.2
Bellott, M.3
Dunbrack Jr., R.L.4
Evanseck, J.D.5
Field, M.J.6
Fischer, S.7
Gao, J.8
Guo, H.9
Ha, S.10
-
28
-
-
79957625368
-
Capturing Spontaneous Partitioning of Peripheral Proteins Using a Biphasic Membrane-Mimetic Model
-
Arcario, M. J.; Ohkubo, Y. Z.; Tajkhorshid, E. Capturing Spontaneous Partitioning of Peripheral Proteins Using a Biphasic Membrane-Mimetic Model J. Phys. Chem. B 2011, 115, 7029-7037
-
(2011)
J. Phys. Chem. B
, vol.115
, pp. 7029-7037
-
-
Arcario, M.J.1
Ohkubo, Y.Z.2
Tajkhorshid, E.3
-
29
-
-
77953377650
-
Update of the CHARMM All-Atom Additive Force Field for Lipids: Validation on Six Lipid Types
-
Klauda, J. B.; Venable, R. M.; Freites, J. A.; O'Connor, J. W.; Tobias, D. J.; Mondragon-Ramirez, C.; Vorobyov, I.; MacKerell, A. D., Jr.; Pastor, R. W. Update of the CHARMM All-Atom Additive Force Field for Lipids: Validation on Six Lipid Types J. Phys. Chem. B 2010, 114, 7830-7843
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 7830-7843
-
-
Klauda, J.B.1
Venable, R.M.2
Freites, J.A.3
O'Connor, J.W.4
Tobias, D.J.5
Mondragon-Ramirez, C.6
Vorobyov, I.7
Mackerell Jr., A.D.8
Pastor, R.W.9
-
30
-
-
3142714765
-
Extending the Treatment of Backbone Energetics in Protein Force Fields: Limitations of Gas-Phase Quantum Mechanics in Reproducing Protein Conformational Distributions in Molecular Dynamics Simulations
-
MacKerell, A. D., Jr.; Feig, M.; Brooks, C. L., III. Extending the Treatment of Backbone Energetics in Protein Force Fields: Limitations of Gas-Phase Quantum Mechanics in Reproducing Protein Conformational Distributions in Molecular Dynamics Simulations J. Comput. Chem. 2004, 25, 1400-1415
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1400-1415
-
-
Mackerell Jr., A.D.1
Feig, M.2
-
31
-
-
0004016501
-
Comparison of Simple Potential Functions for Simulating Liquid Water
-
Jorgensen, W. L.; Chandrasekhar, J.; Madura, J. D.; Impey, R. W.; Klein, M. L. Comparison of Simple Potential Functions for Simulating Liquid Water J. Chem. Phys. 1983, 79, 926-935
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
32
-
-
36449003554
-
Constant Pressure Molecular Dynamics Algorithms
-
Martyna, G. J.; Tobias, D. J.; Klein, M. L. Constant Pressure Molecular Dynamics Algorithms J. Chem. Phys. 1994, 101, 4177-4189
-
(1994)
J. Chem. Phys.
, vol.101
, pp. 4177-4189
-
-
Martyna, G.J.1
Tobias, D.J.2
Klein, M.L.3
-
33
-
-
36449007836
-
Constant Pressure Molecular Dynamics Simulation: The Langevin Piston Method
-
Feller, S. E.; Zhang, Y.; Pastor, R. W.; Brooks, B. R. Constant Pressure Molecular Dynamics Simulation: The Langevin Piston Method J. Chem. Phys. 1995, 103, 4613-4621
-
(1995)
J. Chem. Phys.
, vol.103
, pp. 4613-4621
-
-
Feller, S.E.1
Zhang, Y.2
Pastor, R.W.3
Brooks, B.R.4
-
34
-
-
33846823909
-
Particle Mesh Ewald: An N·log(N) Method for Ewald Sums in Large Systems
-
Darden, T.; York, D.; Pedersen, L. G. Particle Mesh Ewald: An N·log(N) Method for Ewald Sums in Large Systems J. Chem. Phys. 1993, 98, 10089-10092
-
(1993)
J. Chem. Phys.
, vol.98
, pp. 10089-10092
-
-
Darden, T.1
York, D.2
Pedersen, L.G.3
-
35
-
-
84986519238
-
The Weighted Histogram Analysis Method for Free-Energy Calculations on Biomolecules. I. the Method
-
Kumar, S.; Bouzida, D.; Swendsen, R. H.; Kollman, P. A.; Rosenberg, J. M. The Weighted Histogram Analysis Method for Free-Energy Calculations on Biomolecules. I. The Method J. Comput. Chem. 1992, 13, 1011-1021
-
(1992)
J. Comput. Chem.
, vol.13
, pp. 1011-1021
-
-
Kumar, S.1
Bouzida, D.2
Swendsen, R.H.3
Kollman, P.A.4
Rosenberg, J.M.5
-
37
-
-
46249092554
-
GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation
-
Hess, B.; Kutzner, C.; van der Spoel, D.; Lindahl, E. GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation J. Chem. Theory Comput. 2008, 4, 435-447
-
(2008)
J. Chem. Theory Comput.
, vol.4
, pp. 435-447
-
-
Hess, B.1
Kutzner, C.2
Van Der Spoel, D.3
Lindahl, E.4
-
38
-
-
78651282170
-
G-wham-a Free Weighted Histogram Analysis Implementation Including Robust Error and Autocorrelation Estimates
-
Hub, J. S.; de Groot, B. L.; van der Spoel, D. g-wham-a Free Weighted Histogram Analysis Implementation Including Robust Error and Autocorrelation Estimates J. Chem. Theory Comput. 2010, 6, 3713-3720
-
(2010)
J. Chem. Theory Comput.
, vol.6
, pp. 3713-3720
-
-
Hub, J.S.1
De Groot, B.L.2
Van Der Spoel, D.3
-
39
-
-
0002344794
-
Bootstrap Methods: Another Look at the Jackknife
-
Efron, B. Bootstrap Methods: Another Look at the Jackknife Ann. Stat. 1979, 7, 1-26
-
(1979)
Ann. Stat.
, vol.7
, pp. 1-26
-
-
Efron, B.1
-
41
-
-
36849122972
-
High-Temperature Equation of State by a Perturbation Method. I. Nonpolar Gases
-
Zwanzig, R. W. High-Temperature Equation of State by a Perturbation Method. I. Nonpolar Gases J. Chem. Phys. 1954, 22, 1420-1426
-
(1954)
J. Chem. Phys.
, vol.22
, pp. 1420-1426
-
-
Zwanzig, R.W.1
-
42
-
-
77955577540
-
Good Practices in Free-Energy Calculations
-
Pohorille, A.; Jarzynski, C.; Chipot, C. Good Practices in Free-Energy Calculations J. Phys. Chem. B 2010, 114, 10235-10253
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 10235-10253
-
-
Pohorille, A.1
Jarzynski, C.2
Chipot, C.3
-
43
-
-
36449002336
-
Separation-Shifted Scaling, a New Scaling Method for Lennard-Jones Interactions in Thermodynamic Integration
-
Zacharias, M.; Straatsma, T. P.; McCammon, J. A. Separation-Shifted Scaling, a New Scaling Method for Lennard-Jones Interactions in Thermodynamic Integration J. Chem. Phys. 1994, 100, 9025-9031
-
(1994)
J. Chem. Phys.
, vol.100
, pp. 9025-9031
-
-
Zacharias, M.1
Straatsma, T.P.2
McCammon, J.A.3
-
44
-
-
5244304444
-
Efficient Estimation of Free Energy Differences from Monte Carlo Data
-
Bennett, C. H. Efficient Estimation of Free Energy Differences from Monte Carlo Data J. Comput. Phys. 1976, 22, 245-268
-
(1976)
J. Comput. Phys.
, vol.22
, pp. 245-268
-
-
Bennett, C.H.1
-
45
-
-
84865069022
-
A Toolkit for the Analysis of Free-Energy Perturbation Calculations
-
Liu, P.; Dehez, F.; Cai, W.; Chipot, C. A Toolkit for the Analysis of Free-Energy Perturbation Calculations J. Chem. Theory Comput. 2012, 8, 2606-2616
-
(2012)
J. Chem. Theory Comput.
, vol.8
, pp. 2606-2616
-
-
Liu, P.1
Dehez, F.2
Cai, W.3
Chipot, C.4
-
46
-
-
0029878720
-
VMD - Visual Molecular Dynamics
-
Humphrey, W.; Dalke, A.; Schulten, K. VMD-Visual Molecular Dynamics J. Mol. Graphics 1996, 14, 33-38
-
(1996)
J. Mol. Graphics
, vol.14
, pp. 33-38
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
-
47
-
-
0029738872
-
Experimentally Determined Hydrophobicity Scale for Proteins at Membrane Interfaces
-
Wimley, W. C.; White, S. H. Experimentally Determined Hydrophobicity Scale for Proteins at Membrane Interfaces Nat. Struct. Biol. 1996, 3, 842-848
-
(1996)
Nat. Struct. Biol.
, vol.3
, pp. 842-848
-
-
Wimley, W.C.1
White, S.H.2
-
48
-
-
13444262028
-
Recognition of Transmembrane Helices by the Endoplasmic Reticulum Translocon
-
Hessa, T.; Kim, H.; Bihlmaier, K.; Lundin, C.; Boekel, J.; Andersson, H.; Nilsson, I.; White, S. H.; von Heijne, G. Recognition of Transmembrane Helices by the Endoplasmic Reticulum Translocon Nature 2005, 433, 377-381
-
(2005)
Nature
, vol.433
, pp. 377-381
-
-
Hessa, T.1
Kim, H.2
Bihlmaier, K.3
Lundin, C.4
Boekel, J.5
Andersson, H.6
Nilsson, I.7
White, S.H.8
Von Heijne, G.9
-
49
-
-
79959928058
-
Side-Chain Hydrophobicity Scale Derived from Transmembrane Protein Folding into Lipid Bilayers
-
Moon, C. P.; Fleming, K. G. Side-Chain Hydrophobicity Scale Derived from Transmembrane Protein Folding into Lipid Bilayers Proc. Natl. Acad. Sci. U.S.A. 2011, 108, 10174-10177
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 10174-10177
-
-
Moon, C.P.1
Fleming, K.G.2
-
50
-
-
31544474881
-
Computer Simulation of Partitioning of Ten Pentapeptides Ace-WLXLL at the Cyclohexane/water and Phospholipid/water Interfaces
-
Aliste, M. P.; Tielemann, D. P. Computer Simulation of Partitioning of Ten Pentapeptides Ace-WLXLL at the Cyclohexane/water and Phospholipid/water Interfaces BMC Biochem. 2005, 6, 30
-
(2005)
BMC Biochem.
, vol.6
, pp. 30
-
-
Aliste, M.P.1
Tielemann, D.P.2
-
51
-
-
33748493587
-
Indole Localization in Lipid Membranes Revealed by Molecular Simulation
-
Norman, K. E.; Nymeyer, H. Indole Localization in Lipid Membranes Revealed by Molecular Simulation Biophys. J. 2006, 91, 2046-2054
-
(2006)
Biophys. J.
, vol.91
, pp. 2046-2054
-
-
Norman, K.E.1
Nymeyer, H.2
-
52
-
-
0032552880
-
The Preference of Tryptophan for Membrane Interfaces
-
Yau, W.-M.; Wimley, W. C.; Gawrisch, K.; White, S. H. The Preference of Tryptophan for Membrane Interfaces Biochemistry 1998, 37, 14713-14718
-
(1998)
Biochemistry
, vol.37
, pp. 14713-14718
-
-
Yau, W.-M.1
Wimley, W.C.2
Gawrisch, K.3
White, S.H.4
-
53
-
-
0034284386
-
How Proteins Adapt to a Membrane-Water Interface
-
Killian, J. A.; von Heijne, G. How Proteins Adapt to a Membrane-Water Interface Trends Biochem. Sci. 2000, 25, 429-434
-
(2000)
Trends Biochem. Sci.
, vol.25
, pp. 429-434
-
-
Killian, J.A.1
Von Heijne, G.2
-
54
-
-
79955650131
-
A Look at Arginine in Membranes
-
Hristova, K.; Wimley, W. C. A Look at Arginine in Membranes J. Membr. Biol. 2011, 239, 49-56
-
(2011)
J. Membr. Biol.
, vol.239
, pp. 49-56
-
-
Hristova, K.1
Wimley, W.C.2
-
55
-
-
34247633528
-
On the Thermodynamic Stability of a Charged Arginine Side Chain in a Transmembrane Helix
-
Dorairaj, S.; Allen, T. W. On the Thermodynamic Stability of a Charged Arginine Side Chain in a Transmembrane Helix Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 4943-4948
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 4943-4948
-
-
Dorairaj, S.1
Allen, T.W.2
-
56
-
-
70849119657
-
Structure and Hydration of Membranes Embedded with Voltage-Sensing Domains
-
Krepkiy, D.; Mihailescu, M.; Freites, J.; Schow, E.; Worcester, D.; Gawrisch, K.; Tobias, D.; White, S.; Swartz, K. Structure and Hydration of Membranes Embedded with Voltage-Sensing Domains Nature 2009, 462, 473-U168
-
(2009)
Nature
, vol.462
-
-
Krepkiy, D.1
Mihailescu, M.2
Freites, J.3
Schow, E.4
Worcester, D.5
Gawrisch, K.6
Tobias, D.7
White, S.8
Swartz, K.9
-
57
-
-
33845424528
-
Amino-Acid Solvation Structure in Transmembrane Helices from Molecular Dynamics Simulations
-
Johansson, A. C. V.; Lindahl, E. Amino-Acid Solvation Structure in Transmembrane Helices from Molecular Dynamics Simulations Biophys. J. 2006, 91, 4450-4463
-
(2006)
Biophys. J.
, vol.91
, pp. 4450-4463
-
-
Johansson, A.C.V.1
Lindahl, E.2
-
58
-
-
79952771298
-
Free-Energy Cost for Translocon-Assisted Insertion of Membrane Proteins
-
Gumbart, J.; Chipot, C.; Schulten, K. Free-Energy Cost for Translocon-Assisted Insertion of Membrane Proteins Proc. Natl. Acad. Sci. U.S.A. 2011, 108, 3596-3601
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 3596-3601
-
-
Gumbart, J.1
Chipot, C.2
Schulten, K.3
-
59
-
-
84857333669
-
Determination of Membrane-Insertion Free Energies by Molecular Dynamics Simulations
-
Gumbart, J.; Roux, B. Determination of Membrane-Insertion Free Energies by Molecular Dynamics Simulations Biophys. J. 2012, 104, 795-801
-
(2012)
Biophys. J.
, vol.104
, pp. 795-801
-
-
Gumbart, J.1
Roux, B.2
-
60
-
-
0030005250
-
Solvation Energies of Amino Acid Side Chains and Backbone in a Family of Host-Guest Pentapeptides
-
Wimley, W. C.; Creamer, T. P.; White, S. H. Solvation Energies of Amino Acid Side Chains and Backbone in a Family of Host-Guest Pentapeptides Biochemistry 1996, 35, 5109-5124
-
(1996)
Biochemistry
, vol.35
, pp. 5109-5124
-
-
Wimley, W.C.1
Creamer, T.P.2
White, S.H.3
|