-
1
-
-
46249092554
-
-
B. Hess, C. Kutzner, D. Van Der Spoel, and E. Lindahl, J. Chem. Theory Comput. 4 (3), 435 (2008).
-
(2008)
J. Chem. Theory Comput.
, vol.4
, Issue.3
, pp. 435
-
-
Hess, B.1
Kutzner, C.2
Spoel Der D.Van3
Lindahl, E.4
-
2
-
-
77957937199
-
-
D.E. Shaw, P. Maragakis, K. Lindorff-Larsen, S. Piana, R.O. Dror, M.P. Eastwood, J.A. Bank, J.M. Jumper, J.K. Salmon, Y. Shan, and W. Wriggers, Science 330 (6002), 341 (2010).
-
(2010)
Science
, vol.330
, Issue.6002
, pp. 341
-
-
Shaw, D.E.1
Maragakis, P.2
Lindorff-Larsen, K.3
Piana, S.4
Dror, R.O.5
Eastwood, M.P.6
Bank, J.A.7
Jumper, J.M.8
Salmon, J.K.9
Shan, Y.10
Wriggers, W.11
-
10
-
-
25444481354
-
-
P. Liu, B. Kim, R.A. Friesner, and B.J. Berne, Proc. Natl. Acad. Sci. U.S.A. 102 (39), 13749 (2005).
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, Issue.39
, pp. 13749
-
-
Liu, P.1
Kim, B.2
Friesner, R.A.3
Berne, B.J.4
-
11
-
-
33646203664
-
-
R. Affentranger, I. Tavernelli, and E. Di Iorio, J. Chem. Theory Comput. 2 (2), 217 (2006).
-
(2006)
J. Chem. Theory Comput.
, vol.2
, Issue.2
, pp. 217
-
-
Affentranger, R.1
Tavernelli, I.2
Di Iorio, E.3
-
12
-
-
58149159707
-
-
M. Fajer,D. Hamelberg, and J. McCammon, J. Chem. Theory Comput. 4 (10), 1565 (2008).
-
(2008)
J. Chem. Theory Comput.
, vol.4
, Issue.10
, pp. 1565
-
-
Fajer, M.1
Hamelberg, D.2
McCammon, J.3
-
13
-
-
58149161566
-
-
C. Xu, J. Wang, and H. Liu, J. Chem. Theory Comput. 4 (8), 1348 (2008).
-
(2008)
J. Chem. Theory Comput.
, vol.4
, Issue.8
, pp. 1348
-
-
Xu, C.1
Wang, J.2
Liu, H.3
-
15
-
-
66349093679
-
-
J. Vreede, M.G. Wolf, S.W. de Leeuw, and P.G. Bolhuis, J. Phys. Chem. B 113, 6484 (2009).
-
(2009)
J. Phys. Chem. B
, vol.113
, pp. 6484
-
-
Vreede, J.1
Wolf, M.G.2
De Leeuw, S.W.3
Bolhuis, P.G.4
-
19
-
-
79953011717
-
-
T. Terakawa, T. Kameda, and S. Takada, J. Comput. Chem. 32 (7), 1228 (2011).
-
(2011)
J. Comput. Chem.
, vol.32
, Issue.7
, pp. 1228
-
-
Terakawa, T.1
Kameda, T.2
Takada, S.3
-
20
-
-
79960928036
-
-
L. Wang, R. Friesner, and B. Berne, J. Phys. Chem. B 115 (30), 9431 (2011).
-
(2011)
J. Phys. Chem. B
, vol.115
, Issue.30
, pp. 9431
-
-
Wang, L.1
Friesner, R.2
Berne, B.3
-
22
-
-
34250318638
-
-
A. Pérez, I. Marchán, D. Svozil, J. Sponer, T. Cheatham III, C. Laughton, and M. Orozco, Biophys. J. 92 (11), 3817 (2007).
-
(2007)
Biophys. J.
, vol.92
, Issue.11
, pp. 3817
-
-
Pérez, A.1
Marchán, I.2
Svozil, D.3
Sponer, J.4
Cheatham III, T.5
Laughton, C.6
Orozco, M.7
-
23
-
-
80052820313
-
-
M. Zgarbova, M. Otyepka, J. Sponer, A. Mladek, P. Banas, T.E. Cheatham, and P. Jurecka, J. Chem. Theory Comput. 7 (9), 2886 (2011).
-
(2011)
J. Chem. Theory Comput.
, vol.7
, Issue.9
, pp. 2886
-
-
Zgarbova, M.1
Otyepka, M.2
Sponer, J.3
Mladek, A.4
Banas, P.5
Cheatham, T.E.6
Jurecka, P.7
-
24
-
-
0029011701
-
-
W. Cornell, P. Cieplak, C. Bayly, I. Gould, K. Merz, D. Ferguson,D. Spellmeyer, T. Fox, J. Caldwell, andP. Kollman, J. Am. Chem. Soc. 117 (19), 5179 (1995).
-
(1995)
J. Am. Chem. Soc.
, vol.117
, Issue.19
, pp. 5179
-
-
Cornell, W.1
Cieplak, P.2
Bayly, C.3
Gould, I.4
Merz, K.5
Ferguson, D.6
Spellmeyer, D.7
Fox, T.8
Caldwell, J.9
Kollman, P.10
-
25
-
-
0032922174
-
-
T. Cheatham, 3rd, P. Cieplak, and P. Kollman, J. Biomol. Struct. Dyn. 16 (4), 845 (1999).
-
(1999)
J. Biomol. Struct. Dyn.
, vol.16
, Issue.4
, pp. 845
-
-
Cheatham, T.1
Cieplak, P.2
Kollman, P.3
-
27
-
-
33846823909
-
-
T. Darden, D. York, and L. Pedersen, J. Chem. Phys. 98 (12), 10089 (1993).
-
(1993)
J. Chem. Phys.
, vol.98
, Issue.12
, pp. 10089
-
-
Darden, T.1
York, D.2
Pedersen, L.3
-
28
-
-
0000551750
-
-
T. Okabe, M. Kawata, Y. Okamoto, and M. Mikami, Chem. Phys. Lett. 335 (5-6), 435 (2001).
-
(2001)
Chem. Phys. Lett.
, vol.335
, Issue.5-6
, pp. 435
-
-
Okabe, T.1
Kawata, M.2
Okamoto, Y.3
Mikami, M.4
-
29
-
-
69349100797
-
-
M. Bonomi, D. Branduardi, G. Bussi, C. Camilloni, D. Provasi, P. Raiteri, D. Donadio, F. Marinelli, F. Pietrucci, R. Broglia, andM. Parrinello, Comput. Phys. Commun. 180 (10), 1961 (2009).
-
(2009)
Comput. Phys. Commun.
, vol.180
, Issue.10
, pp. 1961
-
-
Bonomi, M.1
Branduardi, D.2
Bussi, G.3
Camilloni, C.4
Provasi, D.5
Raiteri, P.6
Donadio, D.7
Marinelli, F.8
Pietrucci, F.9
Broglia, R.10
Parrinello, M.11
-
30
-
-
77953513118
-
-
K. Lindorff-Larsen, S. Piana, K. Palmo, P. Maragakis, J.L. Klepeis, R.O. Dror, and D.E. Shaw, Proteins: Struct., Funct., Bioinf. 78 (8), 1950 (2010).
-
(2010)
Proteins: Struct., Funct., Bioinf.
, vol.78
, Issue.8
, pp. 1950
-
-
Lindorff-Larsen, K.1
Piana, S.2
Palmo, K.3
Maragakis, P.4
Klepeis, J.L.5
Dror, R.O.6
Shaw, D.E.7
-
31
-
-
0004016501
-
-
W.L. Jorgensen, J. Chandrasekhar, J.F. Madura, R.W. Impey, and M.L. Klein, J. Chem. Phys. 79, 926 (1983).
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.F.3
Impey, R.W.4
Klein, M.L.5
-
33
-
-
0000388705
-
-
B. Hess, H. Bekker, H.J.C. Berendsen, and J.G.E.M. Fraaije, J. Comput. Chem. 18, 1463 (1997).
-
(1997)
J. Comput. Chem.
, vol.18
, pp. 1463
-
-
Hess, B.1
Bekker, H.2
Berendsen, H.J.C.3
Fraaije, J.G.E.M.4
-
34
-
-
33645961739
-
-
U. Essmann, L. Perera, M. Berkowitz, T. Darden, H. Lee, and L. Pedersen, J. Chem. Phys. 103 (19), 8577 (1995).
-
(1995)
J. Chem. Phys.
, vol.103
, Issue.19
, pp. 8577
-
-
Essmann, U.1
Perera, L.2
Berkowitz, M.3
Darden, T.4
Lee, H.5
Pedersen, L.6
-
35
-
-
33846086933
-
-
G. Bussi, D. Donadio, andM. Parrinello, J. Chem. Phys. 126 (1), 014101 (2007).
-
(2007)
J. Chem. Phys.
, vol.126
, Issue.1
, pp. 014101
-
-
Bussi, G.1
Donadio, D.2
Parrinello, M.3
-
36
-
-
38349091489
-
-
A. Barducci, G. Bussi, and M. Parrinello, Phys. Rev. Lett. 100 (2), 020603 (2008).
-
(2008)
Phys. Rev. Lett.
, vol.100
, Issue.2
, pp. 020603
-
-
Barducci, A.1
Bussi, G.2
Parrinello, M.3
-
37
-
-
32244445917
-
-
H. Ma,D.J. Proctor, E. Kierzek, R. Kierzek, P.C. Bevilacqua, and M. Gruebele, J. Am. Chem. Soc. 128 (5), 1523 (2006).
-
(2006)
J. Am. Chem. Soc.
, vol.128
, Issue.5
, pp. 1523
-
-
Mad, J.1
Proctor, H.2
Kierzek, E.3
Kierzek, R.4
Bevilacqua, P.C.5
Gruebele, M.6
-
39
-
-
77951809910
-
-
G. Zuo, W. Li, J. Zhang, J. Wang, and W. Wang, J. Phys. Chem. B 114 (17), 5835 (2010).
-
(2010)
J. Phys. Chem. B
, vol.114
, Issue.17
, pp. 5835
-
-
Zuo, G.1
Li, W.2
Zhang, J.3
Wang, J.4
Wang, W.5
-
40
-
-
78651294111
-
-
P. Banas, D. Hollas, M. Zgarbova, P. Jurecka, M. Orozco, T.E. Cheatham, J. Sponer, andM. Otyepka, J. Chem. Theory Comput. 6 (12), 3836 (2010).
-
(2010)
J. Chem. Theory Comput.
, vol.6
, Issue.12
, pp. 3836
-
-
Banas, P.1
Hollas, D.2
Zgarbova, M.3
Jurecka, P.4
Orozco, M.5
Cheatham, T.E.6
Sponer, J.7
Otyepka, M.8
-
41
-
-
84875989318
-
-
P. Kuhrova, P. Banas, R.B. Best, J. Sponer, and M. Otyepka, J. Chem. Theory Comput. 9 (4), 2115 (2013).
-
(2013)
J. Chem. Theory Comput.
, vol.9
, Issue.4
, pp. 2115
-
-
Kuhrova, P.1
Banas, P.2
Best, R.B.3
Sponer, J.4
Otyepka, M.5
-
42
-
-
0029878720
-
-
W. Humphrey, A. Dalke, and K. Schulten, J. Mol. Graphics. 14 (1), 33 (1996).
-
(1996)
J. Mol. Graphics.
, vol.14
, Issue.1
, pp. 33
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
-
43
-
-
0034680628
-
-
E. Ennifar, A. Nikulin, S. Tishchenko, A. Serganov, N. Nevskaya, M. Garber, B. Ehresmann, C. Ehresmann, S. Nikonov, and P. Dumas, J. Mol. Biol. 304 (1), 35 (2000).
-
(2000)
J. Mol. Biol.
, vol.304
, Issue.1
, pp. 35
-
-
Ennifar, E.1
Nikulin, A.2
Tishchenko, S.3
Serganov, A.4
Nevskaya, N.5
Garber, M.6
Ehresmann, B.7
Ehresmann, C.8
Nikonov, S.9
Dumas, P.10
-
44
-
-
77952472539
-
-
V. Mlynsky, P. Bans, D. Hollas, K. Réblová, N.G. Walter, J. Sponer, and M. Otyepka, J. Phys. Chem. B 114 (19), 6642 (2010).
-
(2010)
J. Phys. Chem. B
, vol.114
, Issue.19
, pp. 6642
-
-
Mlynsky, V.1
Bans, P.2
Hollas, D.3
Réblová, K.4
Walter, N.G.5
Sponer, J.6
Otyepka, M.7
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