-
1
-
-
48249104039
-
Riboswitches: Emerging themes in RNA structure and function
-
Montange RK, Batey RT (2008) Riboswitches: Emerging themes in RNA structure and function. Annu Rev Biophys 37:117-133.
-
(2008)
Annu Rev Biophys
, vol.37
, pp. 117-133
-
-
Montange, R.K.1
Batey, R.T.2
-
3
-
-
34347401399
-
Riboswitches: Small-molecule recognition by gene regulatory RNAs
-
Edwards TE, Klein DJ, Ferré-D'Amaré AR (2007) Riboswitches: Small-molecule recognition by gene regulatory RNAs. Curr Opin Struct Biol 17(3):273-279.
-
(2007)
Curr Opin Struct Biol
, vol.17
, Issue.3
, pp. 273-279
-
-
Edwards, T.E.1
Klein, D.J.2
Ferré-D'amaré, A.R.3
-
4
-
-
20444478991
-
Riboswitches as versatile gene control elements
-
Tucker BJ, Breaker RR (2005) Riboswitches as versatile gene control elements. Curr Opin Struct Biol 15(3):342-348.
-
(2005)
Curr Opin Struct Biol
, vol.15
, Issue.3
, pp. 342-348
-
-
Tucker, B.J.1
Breaker, R.R.2
-
5
-
-
46349083026
-
The distributions, mechanisms, and structures of metabolite-binding riboswitches
-
Barrick JE, Breaker RR (2007) The distributions, mechanisms, and structures of metabolite-binding riboswitches. Genome Biol 8(11):R239.
-
(2007)
Genome Biol
, vol.8
, Issue.11
-
-
Barrick, J.E.1
Breaker, R.R.2
-
7
-
-
41349118107
-
Complex riboswitches
-
Breaker RR (2008) Complex riboswitches. Science 319(5871):1795-1797.
-
(2008)
Science
, vol.319
, Issue.5871
, pp. 1795-1797
-
-
Breaker, R.R.1
-
8
-
-
84872543206
-
A decade of riboswitches
-
Serganov A, Nudler E (2013) A decade of riboswitches. Cell 152(1-2):17-24.
-
(2013)
Cell
, vol.152
, Issue.1-2
, pp. 17-24
-
-
Serganov, A.1
Nudler, E.2
-
9
-
-
34548253368
-
Structure and mechanism of a metal-sensing regulatory RNA
-
Dann CE, 3rd, et al. (2007) Structure and mechanism of a metal-sensing regulatory RNA. Cell 130(5):878-892.
-
(2007)
Cell
, vol.130
, Issue.5
, pp. 878-892
-
-
Dann III, C.E.1
-
10
-
-
72149126118
-
A switch in time: Detailing the life of a riboswitch
-
Garst AD, Batey RT (2009) A switch in time: Detailing the life of a riboswitch. Biochim Biophys Acta 1789(9-10):584-591.
-
(2009)
Biochim Biophys Acta
, vol.1789
, Issue.9-10
, pp. 584-591
-
-
Garst, A.D.1
Batey, R.T.2
-
11
-
-
84883529362
-
Comparative sequence and structure analysis reveals the conservation and diversity of nucleotide positions and their associated tertiary interactions in the riboswitches
-
Appasamy SD, Ramlan EI, Firdaus-Raih M (2013) Comparative sequence and structure analysis reveals the conservation and diversity of nucleotide positions and their associated tertiary interactions in the riboswitches. PLoS ONE 8(9):e73984.
-
(2013)
PLoS ONE
, vol.8
, Issue.9
-
-
Appasamy, S.D.1
Ramlan, E.I.2
Firdaus-Raih, M.3
-
12
-
-
33646007627
-
An RNA sensor for intracellular Mg(2+)
-
Cromie MJ, Shi Y, Latifi T, Groisman EA (2006) An RNA sensor for intracellular Mg(2+). Cell 125(1):71-84.
-
(2006)
Cell
, vol.125
, Issue.1
, pp. 71-84
-
-
Cromie, M.J.1
Shi, Y.2
Latifi, T.3
Groisman, E.A.4
-
13
-
-
74549174202
-
Determination of riboswitch structures: Light at the end of the tunnel?
-
Serganov A (2010) Determination of riboswitch structures: Light at the end of the tunnel? RNA Biol 7(1):98-103.
-
(2010)
RNA Biol
, vol.7
, Issue.1
, pp. 98-103
-
-
Serganov, A.1
-
14
-
-
65649131534
-
Preparation and crystallization of riboswitch-ligand complexes
-
Pikovskaya O, Serganov AA, Polonskaia A, Serganov A, Patel DJ (2009) Preparation and crystallization of riboswitch-ligand complexes. Methods Mol Biol 540:115-128.
-
(2009)
Methods Mol Biol
, vol.540
, pp. 115-128
-
-
Pikovskaya, O.1
Serganov, A.A.2
Polonskaia, A.3
Serganov, A.4
Patel, D.J.5
-
15
-
-
71449123530
-
Recognition of the bacterial second messenger cyclic diguanylate by its cognate riboswitch
-
Kulshina N, Baird NJ, Ferré-D'Amaré AR (2009) Recognition of the bacterial second messenger cyclic diguanylate by its cognate riboswitch. Nat Struct Mol Biol 16(12):1212-1217.
-
(2009)
Nat Struct Mol Biol
, vol.16
, Issue.12
, pp. 1212-1217
-
-
Kulshina, N.1
Baird, N.J.2
Ferré-D'amaré, A.R.3
-
16
-
-
84861634132
-
Pathophysiology of acute meningitis caused by Streptococcus pneumoniae and adjunctive therapy approaches
-
Barichello T, Generoso JS, Collodel A, Moreira AP, Almeida SM (2012) Pathophysiology of acute meningitis caused by Streptococcus pneumoniae and adjunctive therapy approaches. Arq Neuropsiquiatr 70(5):366-372.
-
(2012)
Arq Neuropsiquiatr
, vol.70
, Issue.5
, pp. 366-372
-
-
Barichello, T.1
Generoso, J.S.2
Collodel, A.3
Moreira, A.P.4
Almeida, S.M.5
-
17
-
-
33846279049
-
Structural investigation of the GlmS ribozyme bound to its catalytic cofactor
-
Cochrane JC, Lipchock SV, Strobel SA (2007) Structural investigation of the GlmS ribozyme bound to its catalytic cofactor. Chem Biol 14(1):97-105.
-
(2007)
Chem Biol
, vol.14
, Issue.1
, pp. 97-105
-
-
Cochrane, J.C.1
Lipchock, S.V.2
Strobel, S.A.3
-
18
-
-
77955081034
-
Dissecting the influence of Mg2+ on 3D architecture and ligand-binding of the guanine-sensing riboswitch aptamer domain
-
Buck J, Noeske J, Wöhnert J, Schwalbe H (2010) Dissecting the influence of Mg2+ on 3D architecture and ligand-binding of the guanine-sensing riboswitch aptamer domain. Nucleic Acids Res 38(12):4143-4153.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.12
, pp. 4143-4153
-
-
Buck, J.1
Noeske, J.2
Wöhnert, J.3
Schwalbe, H.4
-
19
-
-
34548587016
-
Metal-ion binding and metal-ion induced folding of the adenine-sensing riboswitch aptamer domain
-
Noeske J, Schwalbe H, Wöhnert J (2007) Metal-ion binding and metal-ion induced folding of the adenine-sensing riboswitch aptamer domain. Nucleic Acids Res 35(15): 5262-5273.
-
(2007)
Nucleic Acids Res
, vol.35
, Issue.15
, pp. 5262-5273
-
-
Noeske, J.1
Schwalbe, H.2
Wöhnert, J.3
-
20
-
-
84873632585
-
The expression platform and the aptamer: Cooperativity between Mg2+ and ligand in the SAM-I riboswitch
-
Hennelly SP, Novikova IV, Sanbonmatsu KY (2013) The expression platform and the aptamer: Cooperativity between Mg2+ and ligand in the SAM-I riboswitch. Nucleic Acids Res 41(3):1922-1935.
-
(2013)
Nucleic Acids Res
, vol.41
, Issue.3
, pp. 1922-1935
-
-
Hennelly, S.P.1
Novikova, I.V.2
Sanbonmatsu, K.Y.3
-
21
-
-
79953716261
-
Comparison of solution and crystal structures of preQ1 riboswitch reveals calcium-induced changes in conformation and dynamics
-
Zhang Q, Kang M, Peterson RD, Feigon J (2011) Comparison of solution and crystal structures of preQ1 riboswitch reveals calcium-induced changes in conformation and dynamics. J Am Chem Soc 133(14):5190-5193.
-
(2011)
J Am Chem Soc
, vol.133
, Issue.14
, pp. 5190-5193
-
-
Zhang, Q.1
Kang, M.2
Peterson, R.D.3
Feigon, J.4
-
22
-
-
84855724406
-
Recognition of S-adenosylmethionine by riboswitches
-
Batey RT (2011) Recognition of S-adenosylmethionine by riboswitches. Wiley Interdiscip Rev RNA 2(2):299-311.
-
(2011)
Wiley Interdiscip Rev RNA
, vol.2
, Issue.2
, pp. 299-311
-
-
Batey, R.T.1
-
23
-
-
42149091618
-
Riboswitches that sense S-adenosylmethionine and S-adenosylhomocysteine
-
Wang JX, Breaker RR (2008) Riboswitches that sense S-adenosylmethionine and S-adenosylhomocysteine. Biochem Cell Biol 86(2):157-168.
-
(2008)
Biochem Cell Biol
, vol.86
, Issue.2
, pp. 157-168
-
-
Wang, J.X.1
Breaker, R.R.2
-
24
-
-
47749152941
-
Riboswitches in eubacteria sense the second messenger cyclic di-GMP
-
Sudarsan N, et al. (2008) Riboswitches in eubacteria sense the second messenger cyclic di-GMP. Science 321(5887):411-413.
-
(2008)
Science
, vol.321
, Issue.5887
, pp. 411-413
-
-
Sudarsan, N.1
-
25
-
-
77955630859
-
An allosteric selfsplicing ribozyme triggered by a bacterial second messenger
-
Lee ER, Baker JL, Weinberg Z, Sudarsan N, Breaker RR (2010) An allosteric selfsplicing ribozyme triggered by a bacterial second messenger. Science 329(5993): 845-848.
-
(2010)
Science
, vol.329
, Issue.5993
, pp. 845-848
-
-
Lee, E.R.1
Baker, J.L.2
Weinberg, Z.3
Sudarsan, N.4
Breaker, R.R.5
-
26
-
-
34247181095
-
A riboswitch selective for the queuosine precursor preQ1 contains an unusually small aptamer domain
-
Roth A, et al. (2007) A riboswitch selective for the queuosine precursor preQ1 contains an unusually small aptamer domain. Nat Struct Mol Biol 14(4):308-317.
-
(2007)
Nat Struct Mol Biol
, vol.14
, Issue.4
, pp. 308-317
-
-
Roth, A.1
-
27
-
-
41649108068
-
Confirmation of a second natural preQ1 aptamer class in Streptococcaceae bacteria
-
MeyerMM, Roth A, Chervin SM, Garcia GA, Breaker RR (2008) Confirmation of a second natural preQ1 aptamer class in Streptococcaceae bacteria. RNA 14(4):685-695.
-
(2008)
RNA
, vol.14
, Issue.4
, pp. 685-695
-
-
Meyer, M.M.1
Roth, A.2
Chervin, S.M.3
Garcia, G.A.4
Breaker, R.R.5
-
28
-
-
0015514384
-
Possible anticodon sequences of tRNA His, tRNA Asm, and tRNA Asp from Escherichia coli B: Universal presence of nucleoside Q in the first postion of the anticondons of these transfer ribonucleic acids
-
Harada F, Nishimura S (1972) Possible anticodon sequences of tRNA His, tRNA Asm, and tRNA Asp from Escherichia coli B: Universal presence of nucleoside Q in the first postion of the anticondons of these transfer ribonucleic acids. Biochemistry 11(2): 301-308.
-
(1972)
Biochemistry
, vol.11
, Issue.2
, pp. 301-308
-
-
Harada, F.1
Nishimura, S.2
-
29
-
-
0019878174
-
Usage of the three termination codons in a single eukaryotic cell, the Xenopus laevis oocyte
-
Bienz M, et al. (1981) Usage of the three termination codons in a single eukaryotic cell, the Xenopus laevis oocyte. Nucleic Acids Res 9(15):3835-3850.
-
(1981)
Nucleic Acids Res
, vol.9
, Issue.15
, pp. 3835-3850
-
-
Bienz, M.1
-
30
-
-
0022036496
-
Queuosine modification of the wobble base in tRNAHis influences "in vivo" decoding properties
-
Meier F, Suter B, Grosjean H, Keith G, Kubli E (1985) Queuosine modification of the wobble base in tRNAHis influences "in vivo" decoding properties. EMBO J 4(3): 823-827.
-
(1985)
EMBO J
, vol.4
, Issue.3
, pp. 823-827
-
-
Meier, F.1
Suter, B.2
Grosjean, H.3
Keith, G.4
Kubli, E.5
-
31
-
-
0035801515
-
Improvement of reading frame maintenance is a common function for several tRNA modifications
-
Urbonavicius J, Qian Q, Durand JM, Hagervall TG, Björk GR (2001) Improvement of reading frame maintenance is a common function for several tRNA modifications. EMBO J 20(17):4863-4873.
-
(2001)
EMBO J
, vol.20
, Issue.17
, pp. 4863-4873
-
-
Urbonavicius, J.1
Qian, Q.2
Durand, J.M.3
Hagervall, T.G.4
Björk, G.R.5
-
32
-
-
0019975245
-
Isolation and characterization of an Escherichia coli mutant lacking tRNA-guanine transglycosylase: Function and biosynthesis of queuosine in tRNA
-
Noguchi S, Nishimura Y, Hirota Y, Nishimura S (1982) Isolation and characterization of an Escherichia coli mutant lacking tRNA-guanine transglycosylase: Function and biosynthesis of queuosine in tRNA. J Biol Chem 257(11):6544-6550.
-
(1982)
J Biol Chem
, vol.257
, Issue.11
, pp. 6544-6550
-
-
Noguchi, S.1
Nishimura, Y.2
Hirota, Y.3
Nishimura, S.4
-
33
-
-
62549154008
-
Structural Insights into riboswitch control of the biosynthesis of queuosine, a modified nucleotide found in the anticodon of tRNA
-
Kang M, Peterson R, Feigon J (2009) Structural Insights into riboswitch control of the biosynthesis of queuosine, a modified nucleotide found in the anticodon of tRNA. Mol Cell 33(6):784-790.
-
(2009)
Mol Cell
, vol.33
, Issue.6
, pp. 784-790
-
-
Kang, M.1
Peterson, R.2
Feigon, J.3
-
34
-
-
62049086072
-
Cocrystal structure of a class i preQ1 riboswitch reveals a pseudoknot recognizing an essential hypermodified nucleobase
-
Klein DJ, Edwards TE, Ferré-D'Amaré AR (2009) Cocrystal structure of a class I preQ1 riboswitch reveals a pseudoknot recognizing an essential hypermodified nucleobase. Nat Struct Mol Biol 16(3):343-344.
-
(2009)
Nat Struct Mol Biol
, vol.16
, Issue.3
, pp. 343-344
-
-
Klein, D.J.1
Edwards, T.E.2
Ferré-D'amaré, A.R.3
-
35
-
-
79960114180
-
Comparison of a preQ1 riboswitch aptamer in metabolite-bound and free states with implications for gene regulation
-
Jenkins JL, Krucinska J, McCarty RM, Bandarian V, Wedekind JE (2011) Comparison of a preQ1 riboswitch aptamer in metabolite-bound and free states with implications for gene regulation. J Biol Chem 286(28):24626-24637.
-
(2011)
J Biol Chem
, vol.286
, Issue.28
, pp. 24626-24637
-
-
Jenkins, J.L.1
Krucinska, J.2
McCarty, R.M.3
Bandarian, V.4
Wedekind, J.E.5
-
36
-
-
66449089224
-
The structural basis for recognition of the PreQ0 metabolite by an unusually small riboswitch aptamer domain
-
Spitale RC, Torelli AT, Krucinska J, Bandarian V, Wedekind JE (2009) The structural basis for recognition of the PreQ0 metabolite by an unusually small riboswitch aptamer domain. J Biol Chem 284(17):11012-11016.
-
(2009)
J Biol Chem
, vol.284
, Issue.17
, pp. 11012-11016
-
-
Spitale, R.C.1
Torelli, A.T.2
Krucinska, J.3
Bandarian, V.4
Wedekind, J.E.5
-
37
-
-
84890410887
-
Single transcriptional and translational preQ1 riboswitches adopt similar pre-folded ensembles that follow distinct folding pathways into the same ligand-bound structure
-
Suddala KC, et al. (2013) Single transcriptional and translational preQ1 riboswitches adopt similar pre-folded ensembles that follow distinct folding pathways into the same ligand-bound structure. Nucleic Acids Res 41(22):10462-10475.
-
(2013)
Nucleic Acids Res
, vol.41
, Issue.22
, pp. 10462-10475
-
-
Suddala, K.C.1
-
38
-
-
6944235930
-
Clinical features and prognostic factors in adults with bacterial meningitis
-
van de Beek D, et al. (2004) Clinical features and prognostic factors in adults with bacterial meningitis. N Engl J Med 351(18):1849-1859.
-
(2004)
N Engl J Med
, vol.351
, Issue.18
, pp. 1849-1859
-
-
Van De Beek, D.1
-
39
-
-
84879103214
-
Structure of a class II preQ1 riboswitch reveals ligand recognition by a new fold
-
Liberman JA, Salim M, Krucinska J, Wedekind JE (2013) Structure of a class II preQ1 riboswitch reveals ligand recognition by a new fold. Nat Chem Biol 9(6):353-355.
-
(2013)
Nat Chem Biol
, vol.9
, Issue.6
, pp. 353-355
-
-
Liberman, J.A.1
Salim, M.2
Krucinska, J.3
Wedekind, J.E.4
-
40
-
-
84883432280
-
Tuning a riboswitch response through structural extension of a pseudoknot
-
Soulière MF, et al. (2013) Tuning a riboswitch response through structural extension of a pseudoknot. Proc Natl Acad Sci USA 110(35):E3256-E3264.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, Issue.35
-
-
Soulière, M.F.1
-
41
-
-
14644435818
-
Structure of the human telomerase RNA pseudoknot reveals conserved tertiary interactions essential for function
-
Theimer CA, Blois CA, Feigon J (2005) Structure of the human telomerase RNA pseudoknot reveals conserved tertiary interactions essential for function. Mol Cell 17(5):671-682.
-
(2005)
Mol Cell
, vol.17
, Issue.5
, pp. 671-682
-
-
Theimer, C.A.1
Blois, C.A.2
Feigon, J.3
-
42
-
-
84879705616
-
Pyrimidine motif triple helix in the Kluyveromyces lactis telomerase RNA pseudoknot is essential for function in vivo
-
Cash DD, et al. (2013) Pyrimidine motif triple helix in the Kluyveromyces lactis telomerase RNA pseudoknot is essential for function in vivo. Proc Natl Acad Sci USA 110(27):10970-10975.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, Issue.27
, pp. 10970-10975
-
-
Cash, D.D.1
-
43
-
-
84861920270
-
Fluoride ion encapsulation by Mg2+ ions and phosphates in a fluoride riboswitch
-
Ren A, Rajashankar KR, Patel DJ (2012) Fluoride ion encapsulation by Mg2+ ions and phosphates in a fluoride riboswitch. Nature 486(7401):85-89.
-
(2012)
Nature
, vol.486
, Issue.7401
, pp. 85-89
-
-
Ren, A.1
Rajashankar, K.R.2
Patel, D.J.3
-
44
-
-
38849197858
-
Structure of the SAM-II riboswitch bound to S-adenosylmethionine
-
Gilbert SD, Rambo RP, Van Tyne D, Batey RT (2008) Structure of the SAM-II riboswitch bound to S-adenosylmethionine. Nat Struct Mol Biol 15(2):177-182.
-
(2008)
Nat Struct Mol Biol
, vol.15
, Issue.2
, pp. 177-182
-
-
Gilbert, S.D.1
Rambo, R.P.2
Van Tyne, D.3
Batey, R.T.4
-
45
-
-
33845553743
-
Model-free approach to the interpretation of nuclear magnetic-resonance relaxation in macromolecules, 2: Analysis of experimental results
-
Lipari G, Szabo A (1982) Model-free approach to the interpretation of nuclear magnetic-resonance relaxation in macromolecules, 2: Analysis of experimental results. J Am Chem Soc 104(17):4559-4570.
-
(1982)
J Am Chem Soc
, vol.104
, Issue.17
, pp. 4559-4570
-
-
Lipari, G.1
Szabo, A.2
-
46
-
-
0033595535
-
An approach to direct determination of protein dynamics from N-15 NMR relaxation at multiple fields, independent of variable N-15 chemical shift anisotropy and chemical exchange contributions
-
Fushman D, Tjandra N, Cowburn D (1999) An approach to direct determination of protein dynamics from N-15 NMR relaxation at multiple fields, independent of variable N-15 chemical shift anisotropy and chemical exchange contributions. J Am Chem Soc 121(37):8577-8582.
-
(1999)
J Am Chem Soc
, vol.121
, Issue.37
, pp. 8577-8582
-
-
Fushman, D.1
Tjandra, N.2
Cowburn, D.3
-
47
-
-
37549002149
-
Dynamics of large elongated RNA by NMR carbon relaxation
-
Hansen AL, Al-Hashimi HM (2007) Dynamics of large elongated RNA by NMR carbon relaxation. J Am Chem Soc 129(51):16072-16082.
-
(2007)
J Am Chem Soc
, vol.129
, Issue.51
, pp. 16072-16082
-
-
Hansen, A.L.1
Al-Hashimi, H.M.2
-
48
-
-
1842596288
-
NMR studies of biomolecular dynamics and structural plasticity using residual dipolar couplings
-
Tolman JR, Al-Hashimi HM (2003) NMR studies of biomolecular dynamics and structural plasticity using residual dipolar couplings. Annual Reports on NMR Spectroscopy 51:105-166.
-
(2003)
Annual Reports on NMR Spectroscopy
, vol.51
, pp. 105-166
-
-
Tolman, J.R.1
Al-Hashimi, H.M.2
-
49
-
-
34547820982
-
NMR studies of RNA dynamics and structural plasticity using NMR residual dipolar couplings
-
Getz M, Sun X, Casiano-Negroni A, Zhang Q, Al-Hashimi HM (2007) NMR studies of RNA dynamics and structural plasticity using NMR residual dipolar couplings. Biopolymers 86(5-6):384-402.
-
(2007)
Biopolymers
, vol.86
, Issue.5-6
, pp. 384-402
-
-
Getz, M.1
Sun, X.2
Casiano-Negroni, A.3
Zhang, Q.4
Al-Hashimi, H.M.5
-
50
-
-
84872458903
-
Characterising RNA dynamics using NMR residual dipolar couplings
-
eds Clore GM, Potts J (Royal Society of Chemistry, Cambridge, UK)
-
Eichhorn CD, Yang S, Al-Hashimi HM (2012) Characterising RNA dynamics using NMR residual dipolar couplings. Recent Developments in Biomolecular NMR, eds Clore GM, Potts J (Royal Society of Chemistry, Cambridge, UK), pp 184-215.
-
(2012)
Recent Developments in Biomolecular NMR
, pp. 184-215
-
-
Eichhorn, C.D.1
Yang, S.2
Al-Hashimi, H.M.3
-
51
-
-
0030940339
-
NMR evidence for slow collective motions in cyanometmyoglobin
-
Tolman JR, Flanagan JM, Kennedy MA, Prestegard JH (1997) NMR evidence for slow collective motions in cyanometmyoglobin. Nat Struct Biol 4(4):292-297.
-
(1997)
Nat Struct Biol
, vol.4
, Issue.4
, pp. 292-297
-
-
Tolman, J.R.1
Flanagan, J.M.2
Kennedy, M.A.3
Prestegard, J.H.4
-
52
-
-
0037157093
-
Model-free analysis of protein backbone motion from residual dipolar couplings
-
Peti W, Meiler J, Brüschweiler R, Griesinger C (2002) Model-free analysis of protein backbone motion from residual dipolar couplings. J Am Chem Soc 124(20):5822-5833.
-
(2002)
J Am Chem Soc
, vol.124
, Issue.20
, pp. 5822-5833
-
-
Peti, W.1
Meiler, J.2
Brüschweiler, R.3
Griesinger, C.4
-
53
-
-
33646931175
-
NMR residual dipolar couplings as probes of biomolecular dynamics
-
Tolman JR, Ruan K (2006) NMR residual dipolar couplings as probes of biomolecular dynamics. Chem Rev 106(5):1720-1736.
-
(2006)
Chem Rev
, vol.106
, Issue.5
, pp. 1720-1736
-
-
Tolman, J.R.1
Ruan, K.2
-
54
-
-
80155177766
-
Characterizing RNA dynamics at atomic resolution using solution-state NMR spectroscopy
-
Bothe JR, et al. (2011) Characterizing RNA dynamics at atomic resolution using solution-state NMR spectroscopy. Nat Methods 8(11):919-931.
-
(2011)
Nat Methods
, vol.8
, Issue.11
, pp. 919-931
-
-
Bothe, J.R.1
-
55
-
-
34250728646
-
Characterizing the relative orientation and dynamics of RNA A-form helices using NMR residual dipolar couplings
-
Bailor MH, et al. (2007) Characterizing the relative orientation and dynamics of RNA A-form helices using NMR residual dipolar couplings. Nat Protoc 2(6):1536-1546.
-
(2007)
Nat Protoc
, vol.2
, Issue.6
, pp. 1536-1546
-
-
Bailor, M.H.1
-
56
-
-
0033145058
-
Order matrix analysis of residual dipolar couplings using singular value decomposition
-
Losonczi JA, Andrec M, Fischer MW, Prestegard JH (1999) Order matrix analysis of residual dipolar couplings using singular value decomposition. J Magn Reson 138(2): 334-342.
-
(1999)
J Magn Reson
, vol.138
, Issue.2
, pp. 334-342
-
-
Losonczi, J.A.1
Andrec, M.2
Fischer, M.W.3
Prestegard, J.H.4
-
57
-
-
33645874517
-
Insight into the CSA tensors of nucleobase carbons in RNA polynucleotides from solution measurements of residual CSA: Towards new long-range orientational constraints
-
Hansen AL, Al-Hashimi HM (2006) Insight into the CSA tensors of nucleobase carbons in RNA polynucleotides from solution measurements of residual CSA: Towards new long-range orientational constraints. J Magn Reson 179(2):299-307.
-
(2006)
J Magn Reson
, vol.179
, Issue.2
, pp. 299-307
-
-
Hansen, A.L.1
Al-Hashimi, H.M.2
-
58
-
-
0035925113
-
Structural and dynamic analysis of residual dipolar coupling data for proteins
-
Tolman JR, Al-Hashimi HM, Kay LE, Prestegard JH (2001) Structural and dynamic analysis of residual dipolar coupling data for proteins. J Am Chem Soc 123(7): 1416-1424.
-
(2001)
J Am Chem Soc
, vol.123
, Issue.7
, pp. 1416-1424
-
-
Tolman, J.R.1
Al-Hashimi, H.M.2
Kay, L.E.3
Prestegard, J.H.4
-
59
-
-
73249122481
-
Free energy calculation of modified base-pair formation in explicit solvent: A predictive model
-
Vendeix FA, Munoz AM, Agris PF (2009) Free energy calculation of modified base-pair formation in explicit solvent: A predictive model. RNA 15(12):2278-2287.
-
(2009)
RNA
, vol.15
, Issue.12
, pp. 2278-2287
-
-
Vendeix, F.A.1
Munoz, A.M.2
Agris, P.F.3
-
60
-
-
67849097652
-
NMR chemical exchange as a probe for ligand-binding kinetics in a theophylline-binding RNA aptamer
-
Latham MP, Zimmermann GR, Pardi A (2009) NMR chemical exchange as a probe for ligand-binding kinetics in a theophylline-binding RNA aptamer. J Am Chem Soc 131(14):5052-5053.
-
(2009)
J Am Chem Soc
, vol.131
, Issue.14
, pp. 5052-5053
-
-
Latham, M.P.1
Zimmermann, G.R.2
Pardi, A.3
-
61
-
-
0003489517
-
-
Academic Press, San Diego, CA
-
Cavanagh J, Fairbrother WJ, Palmer AGI, Skelton NJ (1996) Protein NMR Spectroscopy (Academic Press, San Diego, CA).
-
(1996)
Protein NMR Spectroscopy
-
-
Cavanagh, J.1
Fairbrother, W.J.2
Palmer, A.G.I.3
Skelton, N.J.4
-
62
-
-
34548353962
-
Mg2+ binding and archaeosine modification stabilize the G15 C48 Levitt base pair in tRNAs
-
Oliva R, Tramontano A, Cavallo L (2007) Mg2+ binding and archaeosine modification stabilize the G15 C48 Levitt base pair in tRNAs. RNA 13(9):1427-1436.
-
(2007)
RNA
, vol.13
, Issue.9
, pp. 1427-1436
-
-
Oliva, R.1
Tramontano, A.2
Cavallo, L.3
-
63
-
-
58149179987
-
PseudoBase++: An extension of PseudoBase for easy searching, formatting and visualization of pseudoknots
-
Taufer M, et al. (2009) PseudoBase++: An extension of PseudoBase for easy searching, formatting and visualization of pseudoknots. Nucleic Acids Res 37(Database issue): D127-D135.
-
(2009)
Nucleic Acids Res
, vol.37
, Issue.DATABASE ISSUE.
-
-
Taufer, M.1
-
64
-
-
79952996320
-
An expanded collection and refined consensus model of glmS ribozymes
-
McCown PJ, Roth A, Breaker RR (2011) An expanded collection and refined consensus model of glmS ribozymes. RNA 17(4):728-736.
-
(2011)
RNA
, vol.17
, Issue.4
, pp. 728-736
-
-
McCown, P.J.1
Roth, A.2
Breaker, R.R.3
-
65
-
-
0029088789
-
RNA ligands to human nerve growth factor
-
Binkley J, et al. (1995) RNA ligands to human nerve growth factor. Nucleic Acids Res 23(16):3198-3205.
-
(1995)
Nucleic Acids Res
, vol.23
, Issue.16
, pp. 3198-3205
-
-
Binkley, J.1
-
66
-
-
3242774585
-
Experiments for correlating quaternary carbons in RNA bases
-
Fiala R, Munzarová ML, Sklenár V (2004) Experiments for correlating quaternary carbons in RNA bases. J Biomol NMR 29(4):477-490.
-
(2004)
J Biomol NMR
, vol.29
, Issue.4
, pp. 477-490
-
-
Fiala, R.1
Munzarová, M.L.2
Sklenár, V.3
-
67
-
-
0033170470
-
Triple-resonance experiments for correlation of H5 and exchangeable pyrimidine base hydrogens in (13)C, (15)N-labeled RNA
-
Wöhnert J, Ramachandran R, Görlach M, Brown LR (1999) Triple-resonance experiments for correlation of H5 and exchangeable pyrimidine base hydrogens in (13)C, (15)N-labeled RNA. J Magn Reson 139(2):430-433.
-
(1999)
J Magn Reson
, vol.139
, Issue.2
, pp. 430-433
-
-
Wöhnert, J.1
Ramachandran, R.2
Görlach, M.3
Brown, L.R.4
-
68
-
-
44949289665
-
Sensitivity improvement in isotropic mixing (TOCSY) experiments
-
Cavanagh J, Rance M (1969) Sensitivity improvement in isotropic mixing (TOCSY) experiments. J Magn Reson 88(1):72-85.
-
(1969)
J Magn Reson
, vol.88
, Issue.1
, pp. 72-85
-
-
Cavanagh, J.1
Rance, M.2
-
69
-
-
1242340502
-
New applications of 2D filtered/ edited NOESY for assignment and structure elucidation of RNA and RNA-protein complexes
-
Peterson RD, Theimer CA, Wu H, Feigon J (2004) New applications of 2D filtered/ edited NOESY for assignment and structure elucidation of RNA and RNA-protein complexes. J Biomol NMR 28(1):59-67.
-
(2004)
J Biomol NMR
, vol.28
, Issue.1
, pp. 59-67
-
-
Peterson, R.D.1
Theimer, C.A.2
Wu, H.3
Feigon, J.4
-
70
-
-
56949105325
-
Solution structure and dynamics of the wild-type pseudoknot of human telomerase RNA
-
Kim NK, et al. (2008) Solution structure and dynamics of the wild-type pseudoknot of human telomerase RNA. J Mol Biol 384(5):1249-1261.
-
(2008)
J Mol Biol
, vol.384
, Issue.5
, pp. 1249-1261
-
-
Kim, N.K.1
-
71
-
-
0029881007
-
MOLMOL: A program for display and analysis of macromolecular structures
-
29-32
-
Koradi R, Billeter M, Wüthrich K (1996) MOLMOL: A program for display and analysis of macromolecular structures. J Mol Graph 14(1):51-55, 29-32.
-
(1996)
J Mol Graph
, vol.14
, Issue.1
, pp. 51-55
-
-
Koradi, R.1
Billeter, M.2
Wüthrich, K.3
-
72
-
-
0024539180
-
Defining the structure of irregular nucleic acids: Conventions and principles
-
Lavery R, Sklenar H (1989) Defining the structure of irregular nucleic acids: Conventions and principles. J Biomol Struct Dyn 6(4):655-667.
-
(1989)
J Biomol Struct Dyn
, vol.6
, Issue.4
, pp. 655-667
-
-
Lavery, R.1
Sklenar, H.2
-
73
-
-
22744455135
-
Pseudoknots: RNA structures with diverse functions
-
Staple DW, Butcher SE (2005) Pseudoknots: RNA structures with diverse functions. PLoS Biol 3(6):e213.
-
(2005)
PLoS Biol
, vol.3
, Issue.6
-
-
Staple, D.W.1
Butcher, S.E.2
-
74
-
-
0035010211
-
Geometric nomenclature and classification of RNA base pairs
-
Leontis NB, Westhof E (2001) Geometric nomenclature and classification of RNA base pairs. RNA 7(4):499-512.
-
(2001)
RNA
, vol.7
, Issue.4
, pp. 499-512
-
-
Leontis, N.B.1
Westhof, E.2
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