Maximising the yeast chronological lifespan

Sub-Cellular Biochemistry

Volumn 57, Issue , 2015, Pages 145-159

  Piper, Peter W ^a  

^a UNIVERSITY OF SHEFFIELD   (United Kingdom)

Author keywords

Chronological lifespan; High throughput screen; Somatic maintenance; Starvation; Survival

Indexed keywords

CAENORHABDITIS ELEGANS;

AGING; BIOLOGICAL MODEL; CELL DIVISION; ENERGY METABOLISM; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; LONGEVITY; METABOLISM; MICROBIAL VIABILITY; MITOCHONDRION; MUTATION; OXIDATIVE STRESS; PHYSIOLOGY; SACCHAROMYCES CEREVISIAE; SIGNAL TRANSDUCTION; TIME;

AGING; CELL DIVISION; ENERGY METABOLISM; GENE EXPRESSION REGULATION, FUNGAL; LONGEVITY; MICROBIAL VIABILITY; MITOCHONDRIA; MODELS, BIOLOGICAL; MUTATION; OXIDATIVE STRESS; SACCHAROMYCES CEREVISIAE; SIGNAL TRANSDUCTION; TIME FACTORS;

EID: 84893792592     PISSN: 03060225     EISSN: None     Source Type: Journal    
DOI: 10.1007/978-94-007-2561-4_7     Document Type: Article

References (60)

1. Abele D, Strahl J, Brey T, Philipp EE (2008) Imperceptible senescence: ageing in the ocean quahog Arctica islandica. Free Radic Res 42(5):474–480
2. Alvers AL, Wood MS, Hu D, Kaywell AC, Dunn WA Jr, Aris JP (2009) Autophagy is required for extension of yeast chronological life span by rapamycin. Autophagy 5(6):847–849
3. Anisimov VN, Zabezhinski MA, Popovich IG, Piskunova TS, Semenchenko AV, Tyndyk ML et al (2010) Rapamycin extends maximal lifespan in cancer-prone mice. Am J Pathol 176(5):2092–2097
4. Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA et al (2003) Current protocols in molecular biology. John Wiley and Sons, New York, NY
5. Barford JP (1990) A general model for aerobic yeast growth: batch growth. Biotechnol Bioeng 35(9):907–920
6. Barros MH, Bandy B, Tahara EB, Kowaltowski AJ (2004) Higher respiratory activity decreases mitochondrial reactive oxygen release and increases life span in Saccharomyces cerevisiae. J Biol Chem 279(48):49883–49888
7. Blagosklonny MV (2008) Aging: ROS or TOR. Cell Cycle 7(21):3344–3354
8. Boer VM, Amini S, Botstein D (2008) Influence of genotype and nutrition on survival and metabolism of starving yeast. Proc Natl Acad Sci USA 105(19):6930–6935
9. Bonawitz ND, Rodeheffer MS, Shadel GS (2006) Defective mitochondrial gene expression results in reactive oxygen species-mediated inhibition of respiration and reduction of yeast life span. Mol Cell Biol 26(13):4818–4829
10. Burtner CR, Murakami CJ, Kaeberlein M (2009) A genomic approach to yeast chronological aging. Meth Mol Biol 548:101–114
11. Burtner CR, Murakami CJ, Kennedy BK, Kaeberlein M (2009) A molecular mechanism of chronological aging in yeast. Cell Cycle 8(8):1256–1270
12. Chabes A, Stillman B (2007) Constitutively high dNTP concentration inhibits cell cycle progression and the DNA damage checkpoint in yeast Saccharomyces cerevisiae. Proc Natl Acad Sci USA 104(4):1183–1188
13. Curtis C, Landis GN, Folk D, Wehr NB, Hoe N, Waskar M et al (2007) Transcriptional profiling of MnSOD-mediated lifespan extension in Drosophila reveals a species-general network of aging and metabolic genes. Genome Biol 8(12):R262
14. Deegenaars ML, Watson K (1998) Heat shock response in psychrophilic and psychrotrophic yeast from Antarctica. Extremophiles 2(1):41–49
15. Doonan R, McElwee JJ, Matthijssens F, Walker GA, Houthoofd K, Back P et al (2008) Against the oxidative damage theory of aging: superoxide dismutases protect against oxidative stress but have little or no effect on life span in Caenorhabditis elegans. Genes Dev 22(23):3236–3241
16. Fabrizio P, Battistella L, Vardavas R, Gattazzo C, Liou LL, Diaspro A et al (2004) Superoxide is a mediator of an altruistic aging program in Saccharomyces cerevisiae. J Cell Biol 166(7):1055–1067
17. Fabrizio P, Gattazzo C, Battistella L, Wei M, Cheng C, McGrew K et al (2005) Sir2 blocks extreme life-span extension. Cell 123(4):655–667
18. Fabrizio P, Longo VD (2003) The chronological life span of Saccharomyces cerevisiae. Aging Cell 2(2):73–81
19. Gomes P, Sampaio-Marques B, Ludovico P, Rodrigues F, Leao C (2007) Low auxotrophy-complementing amino acid concentrations reduce yeast chronological life span. Mech Ageing Dev 128(5–6):383–391
20. Granot D, Snyder M (1993) Carbon source induces growth of stationary phase yeast cells, independent of carbon source metabolism. Yeast 9:465–479
21. Harris N, Bachler M, Costa V, Mollapour M, Moradas-Ferreira P, Piper PW (2005) Overexpressed Sod1p acts either to reduce or to increase the lifespans and stress resistance of yeast, depending on whether it is Cu-deficient or an active Cu,Zn-superoxide dismutase. Aging Cell 4(1):41–52
22. Harris N, Costa V, Maclean MJ, Mollapour M, Moradas-Ferreira P, Piper PW (2003) Mn-Sod overexpression extends the yeast chronological (G0) life span, but acts independently of Sir2p histone deacetylase to shorten the replicative life span of dividing cells. Free Radic Biol Med 34:1599–1606
23. Herker E, Jungwirth H, Lehmann KA, Maldener C, Frohlich KU, Wissing S et al (2004) Chronological aging leads to apoptosis in yeast. J Cell Biol 164(4):501–507
24. Herman PK (2002) Stationary phase in yeast. Curr Opin Microbiol 5(6):602–607
25. Huber A, Bodenmiller B, Uotila A, Stahl M, Wanka S, Gerrits B et al (2009) Characterization of the rapamycin-sensitive phosphoproteome reveals that Sch9 is a central coordinator of protein synthesis. Genes Dev 23(16):1929–1943
26. Jimenez-Hidalgo M, Santos-Ocana C, Padilla S, Villalba JM, Lopez-Lluch G, Martin-Montalvo A et al (2009) NQR1 controls lifespan by regulating the promotion of respiratory metabolism in yeast. Aging Cell 8(2):140–151
27. Kaeberlein M, Andalis AA, Fink GR, Guarente L (2002) High osmolarity extends life span in Saccharomyces cerevisiae by a mechanism related to calorie restriction. Mol Cell Biol 22(22):8056–8066
28. Kirkwood TB (2008) Understanding ageing from an evolutionary perspective. J Intern Med 263(2):117–127
29. Longo VD, Gralla EB, Valentine JS (1996) Superoxide dismutase is essential for stationary phase survival in S. cerevisiae: Mitochondrial production of toxic oxygen species in vivo. J Biol Chem 271:12275–12280
30. MacLean M, Harris N, Piper PW (2001) Chronological life span of stationary phase yeast cells; a model for investigating the factors that might influence the ageing of postmitotic tissues in higher organisms. Yeast 18:499–509
31. MacLean MJ, Aamodt R, Harris NL, Alseth I, Seeberg E, Bjørås M et al (2003) Base excision repair activities needed for yeast to attain its full chronological life span. Aging Cell 2:93–104
32. Madeo F, Frohlich E, Ligr M, Grey M, Sigrist SJ, Wolf DH et al (1999) Oxygen stress: a regulator of apoptosis in yeast. J Cell Biol 145(4):757–767
33. Matecic M, Smith DL, Pan X, Maqani N, Bekiranov S, Boeke JD et al (2010) A microarray-based genetic screen for yeast chronological aging factors. PLoS Genet 6(4):e1000921
34. Murakami CJ, Burtner CR, Kennedy BK, Kaeberlein M (2008) A method for high-throughput quantitative analysis of yeast chronological life span. J Gerontol A Biol Sci Med Sci 63(2):113–121
35. Neklesa TK, Davis RW (2008) Superoxide anions regulate TORC1 and its ability to bind Fpr1:rapamycin complex. Proc Natl Acad Sci USA 105(39):15166–15171
36. Oliveira GA, Tahara EB, Gombert AK, Barros MH, Kowaltowski AJ (2008) Increased aerobic metabolism is essential for the beneficial effects of caloric restriction on yeast life span. J Bioenerg Biomembr 40(4):381–388
37. Olsen B, Murakami CJ, Kaeberlein M (2010) YODA: software to facilitate high-throughput analysis of chronological life span, growth rate, and survival in budding yeast. BMC Bioinformatics 11:141
38. Orr WC, Mockett RJ, Benes JJ, Sohal RS (2003) Effects of overexpression of copper-zinc and manganese superoxide dismutases, catalase, and thioredoxin reductase genes on longevity in Drosophila melanogaster. J Biol Chem 278(29):26418–26422
39. Pan Y, Shadel GS (2009) Extension of chronological life span by reduced TOR signaling requires down-regulation of Sch9p and involves increased mitochondrial OXPHOS complex density. Aging (Albany NY) 1(1):131–145
40. Pawar V, Jingjing L, Patel N, Kaur N, Doetsch PW, Shadel GS et al (2009) Checkpoint kinase phosphorylation in response to endogenous oxidative DNA damage in repair-deficient stationary-phase Saccharomyces cerevisiae. Mech Ageing Dev 130(8):501–508
41. Perez VI, Van Remmen H, Bokov A, Epstein CJ, Vijg J, Richardson A (2009) The overexpression of major antioxidant enzymes does not extend the lifespan of mice. Aging Cell 8(1):73–75
42. Perrone GG, Grant CM, Dawes IW (2005) Genetic and environmental factors influencing glutathione homeostasis in Saccharomyces cerevisiae. Mol Biol Cell 16(1):218–230
43. Piper PW (2006) Long-lived yeast as a model for ageing research. Yeast 23:215–226
44. Piper PW, Harris NL, MacLean M (2006) Preadaptation to efficient respiratory maintenance is essential both for maximal longevity and the retention of replicative potential in chronologically ageing yeast. Mech Ageing Dev 127(9):733–740
45. Postma L, Lehrach H, Ralser M (2009) Surviving in the cold: yeast mutants with extended hibernating lifespan are oxidant sensitive. Aging (Albany NY) 1(11):957–960
46. Powers RW 3rd, Kaeberlein M, Caldwell SD, Kennedy BK, Fields S (2006) Extension of chronological life span in yeast by decreased TOR pathway signaling. Genes Dev 20(2):174–184
47. Qin H, Lu M, Goldfarb DS (2008) Genomic instability is associated with natural life span variation in Saccharomyces cerevisiae. PLoS One 3(7):e2670
48. Ringvoll J, Uldal L, Roed MA, Reite K, Baynton K, Klungland A et al (2007) Mutations in the RAD27 and SGS1 genes differentially affect the chronological and replicative lifespan of yeast cells growing on glucose and glycerol. FEMS Yeast Res 7(6):848–859
49. Selman C, Tullet JM, Wieser D, Irvine E, Lingard SJ, Choudhury AI et al (2009) Ribosomal protein S6 kinase 1 signaling regulates mammalian life span. Science 326(5949):140–144
50. Shen C, Lancaster CS, Shi B, Guo H, Thimmaiah P, Bjornsti MA (2007) TOR signaling is a determinant of cell survival in response to DNA damage. Mol Cell Biol 27(20):7007–7017
51. Sherman F (1991) Getting started with yeast. In Guthrie C, Fink GR (eds) Guide to yeast genetics and molecular biology. Academic Press, San Diego, pp 3–21
52. Smith DL Jr, McClure JM, Matecic M, Smith JS (2007) Calorie restriction extends the chronological lifespan of Saccharomyces cerevisiae independently of the Sirtuins. Aging Cell 6(5):649–662
53. Sturtz LA, Diekert K, Jensen LT, Lill R, Culotta VC (2001) A fraction of the yeast Cu/Zn superoxide dismutase and its metallochaperone, CCS, localise to the intermembrane space of mitochondria: a physiological role for SOD1 in guarding against mitochondrial oxidative damage. J Biol Chem 276:38084–38089
54. Urban J, Soulard A, Huber A, Lippman S, Mukhopadhyay D, Deloche O et al (2007) Sch9 is a major target of TORC1 in Saccharomyces cerevisiae. Mol Cell 26(5):663–674
55. Wang X, Proud CG (2009) Nutrient control of TORC1, a cell-cycle regulator. Trends Cell Biol 19(6):260–267
56. Wei M, Fabrizio P, Hu J, Ge H, Cheng C, Li L et al (2008) Life span extension by calorie restriction depends on Rim15 and transcription factors downstream of Ras/PKA, Tor, and Sch9. PLoS Genet 4(1):e13
57. Weinberger M, Feng L, Paul A, Smith DL Jr, Hontz RD, Smith JS et al (2007) DNA replication stress is a determinant of chronological lifespan in budding yeast. PLoS One 2(1):e748
58. Werner-Washburne M, Braun EL, Crawford ME, Peck VM (1996) Stationary phase in Saccharomyces cerevisiae. Mol Microbiol 19:1159–1166
59. Winzeler EA, Shoemaker DD, Astromoff A, Liang H, Anderson K, Andre B et al (1999) Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. Science 285(5429):901–906
60. Wullschleger S, Loewith R, Hall MN (2006) TOR signaling in growth and metabolism. Cell 124(3):471–484