-
1
-
-
84863667810
-
Comparative genomics reveals two novel RNAi factors in Trypanosoma brucei and provides insight into the core machinery
-
doi: 10.1371/journal.ppat.1002678
-
Barnes, R., Shi, H., Kolev, N., Tschudi, C., and Ullu, E. (2012). Comparative genomics reveals two novel RNAi factors in Trypanosoma brucei and provides insight into the core machinery. PLoS Pathog. 8:e1002678. doi: 10.1371/journal.ppat.1002678
-
(2012)
PLoS Pathog.
, vol.8
-
-
Barnes, R.1
Shi, H.2
Kolev, N.3
Tschudi, C.4
Ullu, E.5
-
2
-
-
84871188045
-
Management of trypanosomiasis and leishmaniasis
-
doi: 10.1093/bmb/lds031
-
Barrett, M. P., and Croft, S. L. (2012). Management of trypanosomiasis and leishmaniasis. Br. Med. Bull. 104, 175-196. doi: 10.1093/bmb/lds031
-
(2012)
Br. Med. Bull.
, vol.104
, pp. 175-196
-
-
Barrett, M.P.1
Croft, S.L.2
-
3
-
-
84874586399
-
NOT10 and C2orf29/NOT11 form a conserved module of the CCR4-NOT complex that docks onto the NOT1 N-terminal domain
-
doi: 10.4161/rna.23018
-
Bawankar, P., Loh, B., Wohlbold, L., Schmidt, S., and Izaurralde, E. (2013). NOT10 and C2orf29/NOT11 form a conserved module of the CCR4-NOT complex that docks onto the NOT1 N-terminal domain. RNA Biol. 10, 228-244. doi: 10.4161/rna.23018
-
(2013)
RNA Biol.
, vol.10
, pp. 228-244
-
-
Bawankar, P.1
Loh, B.2
Wohlbold, L.3
Schmidt, S.4
Izaurralde, E.5
-
4
-
-
33745810581
-
Energy metabolism of trypanosomatids: adaptation to available carbon sources
-
doi: 10.1016/j.molbiopara.2006.03.017
-
Bringaud, F., Riviere, L., and Coustou, V. (2006). Energy metabolism of trypanosomatids: adaptation to available carbon sources. Mol. Biochem. Parasitol. 149, 1-9. doi: 10.1016/j.molbiopara.2006.03.017
-
(2006)
Mol. Biochem. Parasitol.
, vol.149
, pp. 1-9
-
-
Bringaud, F.1
Riviere, L.2
Coustou, V.3
-
5
-
-
46949092431
-
Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes
-
doi: 10.1098/rsbl.2008.0224
-
Burki, F., Shalchian-Tabrizi, K., and Pawlowski, J. (2008). Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes. Biol. Lett. 4, 366-369. doi: 10.1098/rsbl.2008.0224
-
(2008)
Biol. Lett.
, vol.4
, pp. 366-369
-
-
Burki, F.1
Shalchian-Tabrizi, K.2
Pawlowski, J.3
-
6
-
-
84888236056
-
The regulation of trypanosome gene expression by RNA-binding proteins
-
doi: 10.1371/journal.ppat.1003680
-
Clayton, C. (2013). The regulation of trypanosome gene expression by RNA-binding proteins. PLoS Pathog. 9:e1003680. doi: 10.1371/journal.ppat.1003680
-
(2013)
PLoS Pathog.
, vol.9
-
-
Clayton, C.1
-
7
-
-
84857773283
-
3' processing in protists
-
doi: 10.1002/wrna.49
-
Clayton, C., and Michaeli, S. (2011). 3' processing in protists. Wiley Interdiscip. Rev. RNA 2, 247-255. doi: 10.1002/wrna.49
-
(2011)
Wiley Interdiscip. Rev. RNA
, vol.2
, pp. 247-255
-
-
Clayton, C.1
Michaeli, S.2
-
8
-
-
35349012982
-
Post-transcriptional regulation of gene expression in trypanosomes and leishmanias
-
doi: 10.1016/j.molbiopara.2007.07.007
-
Clayton, C., and Shapira, M. (2007). Post-transcriptional regulation of gene expression in trypanosomes and leishmanias. Mol. Biochem. Parasitol. 156, 93-101. doi: 10.1016/j.molbiopara.2007.07.007
-
(2007)
Mol. Biochem. Parasitol.
, vol.156
, pp. 93-101
-
-
Clayton, C.1
Shapira, M.2
-
9
-
-
78650096401
-
Cell biology of the trypanosome genome
-
doi: 10.1128/MMBR.00024-10
-
Daniels, J., Gull, K., and Wickstead, B. (2010). Cell biology of the trypanosome genome. Microbiol. Mol. Biol. Rev. 74, 552-569. doi: 10.1128/MMBR.00024-10
-
(2010)
Microbiol. Mol. Biol. Rev.
, vol.74
, pp. 552-569
-
-
Daniels, J.1
Gull, K.2
Wickstead, B.3
-
10
-
-
84876860902
-
Post-transcriptional regulation of the trypanosome heat shock response by a zinc finger protein
-
doi: 10.1371/journal.ppat.1003286
-
Droll, D., Minia, I., Fadda, A., Singh, A., Stewart, M., Queiroz, R., et al. (2013). Post-transcriptional regulation of the trypanosome heat shock response by a zinc finger protein. PLoS Pathog. 9: e1003286. doi: 10.1371/journal.ppat.1003286
-
(2013)
PLoS Pathog.
, vol.9
-
-
Droll, D.1
Minia, I.2
Fadda, A.3
Singh, A.4
Stewart, M.5
Queiroz, R.6
-
11
-
-
0035898660
-
The exosome of Trypanosoma brucei
-
doi: 10.1093/emboj/20.14.3831
-
Estévez, A., Kempf, T., and Clayton, C. E. (2001). The exosome of Trypanosoma brucei. EMBO J. 20, 3831-3839. doi: 10.1093/emboj/20.14.3831
-
(2001)
EMBO J.
, vol.20
, pp. 3831-3839
-
-
Estévez, A.1
Kempf, T.2
Clayton, C.E.3
-
12
-
-
0042317221
-
The roles of inter-subunit interactions in exosome stability
-
doi: 10.1074/jbc. M305333200
-
Estévez, A. M., Lehner, B., Sanderson, C. M., Ruppert, T., and Clayton, C. (2003). The roles of inter-subunit interactions in exosome stability. J. Biol. Chem. 278, 34943-34951. doi: 10.1074/jbc. M305333200
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 34943-34951
-
-
Estévez, A.M.1
Lehner, B.2
Sanderson, C.M.3
Ruppert, T.4
Clayton, C.5
-
13
-
-
84879289671
-
The roles of 3'-exoribonucleases and the exosome in trypanosome mRNA degradation
-
doi: 10.1261/rna.038430.113
-
Fadda, A., Färber, V., Droll, D., and Clayton, C. (2013). The roles of 3'-exoribonucleases and the exosome in trypanosome mRNA degradation. RNA 19, 937-947. doi: 10.1261/rna.038430.113
-
(2013)
RNA
, vol.19
, pp. 937-947
-
-
Fadda, A.1
Färber, V.2
Droll, D.3
Clayton, C.4
-
14
-
-
84875442713
-
Trypanosome CNOT10 is essential for the integrity of the NOT deadenylase complex and for degradation of many mRNAs
-
doi: 10.1093/nar/gks1133
-
Färber, V., Erben, E., Sharma, S., Stoecklin, G., and Clayton, C. (2013). Trypanosome CNOT10 is essential for the integrity of the NOT deadenylase complex and for degradation of many mRNAs. Nucleic Acids Res. 41, 1211-1222. doi: 10.1093/nar/gks1133
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 1211-1222
-
-
Färber, V.1
Erben, E.2
Sharma, S.3
Stoecklin, G.4
Clayton, C.5
-
15
-
-
79953776282
-
Posttranscriptional control and the role of RNA-binding proteins in gene regulation in trypanosomatid protozoan parasites
-
doi: 10.1002/wrna.6
-
Fernández-Moya, S., and Estévez, A. (2010). Posttranscriptional control and the role of RNA-binding proteins in gene regulation in trypanosomatid protozoan parasites. Wiley Interdiscip. Rev. RNA 1, 34-46. doi: 10.1002/wrna.6
-
(2010)
Wiley Interdiscip. Rev. RNA
, vol.1
, pp. 34-46
-
-
Fernández-Moya, S.1
Estévez, A.2
-
16
-
-
67649397588
-
Epigenetic regulation in African trypanosomes: a new kid on the block
-
doi: 10.1038/nrmicro2149
-
Figueiredo, L. M., Cross, G. A., and Janzen, C. J. (2009). Epigenetic regulation in African trypanosomes: a new kid on the block. Nat. Rev. Microbiol. 7, 504-513. doi: 10.1038/nrmicro2149
-
(2009)
Nat. Rev. Microbiol.
, vol.7
, pp. 504-513
-
-
Figueiredo, L.M.1
Cross, G.A.2
Janzen, C.J.3
-
17
-
-
41449099992
-
Control and regulation of gene expression: quantitative analysis of the expression of phosphoglycerate kinase in bloodstream form Trypanosoma brucei
-
doi: 10.1074/jbc. M705782200
-
Haanstra, J., Stewart, M., Luu, V.-D., van Tuijl, A., Westerhoff, H., Clayton, C., et al. (2008). Control and regulation of gene expression: quantitative analysis of the expression of phosphoglycerate kinase in bloodstream form Trypanosoma brucei. J. Biol. Chem. 283, 2495-2507. doi: 10.1074/jbc. M705782200
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 2495-2507
-
-
Haanstra, J.1
Stewart, M.2
Luu, V.-D.3
van Tuijl, A.4
Westerhoff, H.5
Clayton, C.6
-
18
-
-
41149170097
-
Deadenylation-independent stage-specific mRNA degradation in Leishmania
-
doi: 10.1093/nar/gkn019
-
Haile, S., Dupe, A., and Papadopoulou, B. (2008). Deadenylation-independent stage-specific mRNA degradation in Leishmania. Nucleic Acids Res. 36, 1634-1644. doi: 10.1093/nar/gkn019
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 1634-1644
-
-
Haile, S.1
Dupe, A.2
Papadopoulou, B.3
-
19
-
-
33745942282
-
Expression site silencing and life-cycle progression appear normal in Argonaute1-deficient Trypanosoma brucei
-
doi: 10.1016/j.molbiopara.2006.04.005
-
Janzen, C. J., van Deursen, F., Shi, H., Cross, G. A. M., Matthews, K. R., and Ullu, E. (2006). Expression site silencing and life-cycle progression appear normal in Argonaute1-deficient Trypanosoma brucei. Mol. Biochem. Parasitol. 14, 102-107. doi: 10.1016/j.molbiopara.2006.04.005
-
(2006)
Mol. Biochem. Parasitol.
, vol.14
, pp. 102-107
-
-
Janzen, C.J.1
van Deursen, F.2
Shi, H.3
Cross, G.A.M.4
Matthews, K.R.5
Ullu, E.6
-
20
-
-
84864267118
-
Genome organization is a major component of gene expression control in response to stress and during the cell division cycle in trypanosomes
-
doi: 10.1098/rsob.120033
-
Kelly, S., Kramer, S., Schwede, A., Maini, P., Gull, K., and Carrington, M. (2012). Genome organization is a major component of gene expression control in response to stress and during the cell division cycle in trypanosomes. Open Biol. 2, 120033. doi: 10.1098/rsob.120033
-
(2012)
Open Biol.
, vol.2
, pp. 120033
-
-
Kelly, S.1
Kramer, S.2
Schwede, A.3
Maini, P.4
Gull, K.5
Carrington, M.6
-
21
-
-
78650533544
-
Trans-acting proteins regulating mRNA maturation, stability and translation in trypanosomatids
-
doi: 10.1016/j.pt.2010.06.011
-
Kramer, S., and Carrington, M. (2011). Trans-acting proteins regulating mRNA maturation, stability and translation in trypanosomatids. Trends Parasitol. 27, 23-30. doi: 10.1016/j.pt.2010.06.011
-
(2011)
Trends Parasitol.
, vol.27
, pp. 23-30
-
-
Kramer, S.1
Carrington, M.2
-
22
-
-
77149151571
-
The RNA helicase DHH1 is central to correct expression of many developmentally regulated mRNAs in trypanosomes
-
doi: 10.1242/jcs.058511
-
Kramer, S., Queiroz, R., Ellis, L., Hoheisel, J., Clayton, C., and Carrington, M. (2010). The RNA helicase DHH1 is central to correct expression of many developmentally regulated mRNAs in trypanosomes. J. Cell Sci. 123, 699-711. doi: 10.1242/jcs.058511
-
(2010)
J. Cell Sci.
, vol.123
, pp. 699-711
-
-
Kramer, S.1
Queiroz, R.2
Ellis, L.3
Hoheisel, J.4
Clayton, C.5
Carrington, M.6
-
23
-
-
33845261565
-
Roles of a Trypanosoma brucei 5'→3' exoribonuclease homologue in mRNA degradation
-
doi: 10.1261/rna.291506
-
Li, C.-H., Irmer, H., Gudjonsdottir-Planck, D., Freese, S., Salm, H., Haile, S., et al. (2006). Roles of a Trypanosoma brucei 5'→3' exoribonuclease homologue in mRNA degradation. RNA 12, 2171-2186. doi: 10.1261/rna.291506
-
(2006)
RNA
, vol.12
, pp. 2171-2186
-
-
Li, C.-H.1
Irmer, H.2
Gudjonsdottir-Planck, D.3
Freese, S.4
Salm, H.5
Haile, S.6
-
24
-
-
80054730384
-
The role of the 5'-3' exoribonuclease XRNA in transcriptome-wide mRNA degradation
-
doi: 10.1261/rna.2837311
-
Manful, T., Fadda, A., and Clayton, C. (2011). The role of the 5'-3' exoribonuclease XRNA in transcriptome-wide mRNA degradation. RNA 17, 2039-2047. doi: 10.1261/rna.2837311
-
(2011)
RNA
, vol.17
, pp. 2039-2047
-
-
Manful, T.1
Fadda, A.2
Clayton, C.3
-
25
-
-
84858687295
-
Gene expression in trypanosomatid parasites
-
doi: 10.1155/2010/525241
-
Martinez-Calvillo, S., Vizuet-de-Rueda, J. C., Florencio-Martinez, L. E., Manning-Cela, R. G., and Figueroa-Angulo, E. E. (2010). Gene expression in trypanosomatid parasites. J. Biomed. Biotechnol. 2010, 525241. doi: 10.1155/2010/525241
-
(2010)
J. Biomed. Biotechnol.
, vol.2010
, pp. 525241
-
-
Martinez-Calvillo, S.1
Vizuet-de-Rueda, J.C.2
Florencio-Martinez, L.E.3
Manning-Cela, R.G.4
Figueroa-Angulo, E.E.5
-
26
-
-
14044264288
-
The developmental cell biology of Trypanosoma brucei
-
doi: 10.1242/jcs.01649
-
Matthews, K. R. (2005). The developmental cell biology of Trypanosoma brucei. J. Cell Sci. 118, 283-290. doi: 10.1242/jcs.01649
-
(2005)
J. Cell Sci.
, vol.118
, pp. 283-290
-
-
Matthews, K.R.1
-
27
-
-
79955619183
-
Trans-splicing in trypanosomes: machinery and its impact on the parasite transcriptome
-
doi: 10.2217/fmb.11.20
-
Michaeli, S. (2011). Trans-splicing in trypanosomes: machinery and its impact on the parasite transcriptome. Future Microbiol. 6, 459-474. doi: 10.2217/fmb.11.20
-
(2011)
Future Microbiol.
, vol.6
, pp. 459-474
-
-
Michaeli, S.1
-
28
-
-
0037106465
-
Identification of mRNA decapping activities and an ARE-regulated 3' to 5' exonuclease activity in trypanosome extracts
-
doi: 10.1093/nar/gkf521
-
Milone, J., Wilusz, J., and Bellofatto, V. (2002). Identification of mRNA decapping activities and an ARE-regulated 3' to 5' exonuclease activity in trypanosome extracts. Nucleic Acids Res. 30, 4040-4050. doi: 10.1093/nar/gkf521
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 4040-4050
-
-
Milone, J.1
Wilusz, J.2
Bellofatto, V.3
-
29
-
-
34547883900
-
Toward resolving the eukaryotic tree: the phylogenetic positions of jakobids and crcozoans
-
doi: 10.1016/j.cub.2007.07.036
-
Rodríguez-Ezpeleta, N., Brinkmann, H., Burger, G., Roger, A., Gray, M., Philippe, H., et al. (2007). Toward resolving the eukaryotic tree: the phylogenetic positions of jakobids and crcozoans. Curr. Biol. 17, 1420-1425. doi: 10.1016/j.cub.2007.07.036
-
(2007)
Curr. Biol.
, vol.17
, pp. 1420-1425
-
-
Rodríguez-Ezpeleta, N.1
Brinkmann, H.2
Burger, G.3
Roger, A.4
Gray, M.5
Philippe, H.6
-
30
-
-
45249090233
-
A role for Caf1 in mRNA deadenylation and decay in trypanosomes and human cells
-
doi: 10.1093/nar/gkn108
-
Schwede, A., Ellis, L., Luther, J., Carrington, M., Stoecklin, G., and Clayton, C. (2008). A role for Caf1 in mRNA deadenylation and decay in trypanosomes and human cells. Nucleic Acids Res. 36, 3374-3388. doi: 10.1093/nar/gkn108
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 3374-3388
-
-
Schwede, A.1
Ellis, L.2
Luther, J.3
Carrington, M.4
Stoecklin, G.5
Clayton, C.6
-
31
-
-
70449723338
-
The role of deadenylation in the degradation of unstable mRNAs in trypanosomes
-
doi: 10.1093/nar/gkp571
-
Schwede, A., Manful, T., Jha, B., Helbig, C., Bercovich, N., Stewart, M., et al. (2009). The role of deadenylation in the degradation of unstable mRNAs in trypanosomes. Nucleic Acids Res. 37, 5511-5528. doi: 10.1093/nar/gkp571
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 5511-5528
-
-
Schwede, A.1
Manful, T.2
Jha, B.3
Helbig, C.4
Bercovich, N.5
Stewart, M.6
-
32
-
-
0346363759
-
Argonaute protein in the early divergent eukaryote Trypanosoma brucei: control of small interfering RNA accumulation and retroposon transcript abundance
-
doi: 10.1128/MCB.24.1.420-427.2004
-
Shi, H., Djikeng, A., Tschudi, C., and Ullu, E. (2004). Argonaute protein in the early divergent eukaryote Trypanosoma brucei: control of small interfering RNA accumulation and retroposon transcript abundance. Mol. Cell. Biol. 24, 420-427. doi: 10.1128/MCB.24.1.420-427.2004
-
(2004)
Mol. Cell. Biol.
, vol.24
, pp. 420-427
-
-
Shi, H.1
Djikeng, A.2
Tschudi, C.3
Ullu, E.4
-
33
-
-
77956127684
-
Genome-wide analysis of mRNA abundance in two life-cycle stages of Trypanosoma brucei and identification of splicing and polyadenylation sites
-
doi: 10.1093/nar/gkq237
-
Siegel, T., Hekstra, D., Wang, X., Dewell, S., and Cross, G. (2010). Genome-wide analysis of mRNA abundance in two life-cycle stages of Trypanosoma brucei and identification of splicing and polyadenylation sites. Nucleic Acids Res. 38, 4946-4957. doi: 10.1093/nar/gkq237
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 4946-4957
-
-
Siegel, T.1
Hekstra, D.2
Wang, X.3
Dewell, S.4
Cross, G.5
-
34
-
-
48349115919
-
Antigenic variation in Trypanosoma brucei: joining the DOTs
-
doi: 10.1371/journal.pbio.0060185
-
Stockdale, C., Swiderski, M., Barry, J., and McCulloch, R. (2008). Antigenic variation in Trypanosoma brucei: joining the DOTs. PLoS Biol. 6:e185. doi: 10.1371/journal.pbio.0060185
-
(2008)
PLoS Biol.
, vol.6
-
-
Stockdale, C.1
Swiderski, M.2
Barry, J.3
McCulloch, R.4
-
35
-
-
84865324373
-
Small interfering RNA-producing loci in the ancient parasitic eukaryote Trypanosoma brucei
-
doi: 10.1186/1471-2164-13-427
-
Tschudi, C., Shi, H., Franklin, J., and Ullu, E. (2012). Small interfering RNA-producing loci in the ancient parasitic eukaryote Trypanosoma brucei. BMC Genomics 13:427. doi: 10.1186/1471-2164-13-427
-
(2012)
BMC Genomics
, vol.13
, pp. 427
-
-
Tschudi, C.1
Shi, H.2
Franklin, J.3
Ullu, E.4
-
36
-
-
80052385047
-
Poly(A)-specific Ribonuclease (PARN-1) function in stage-specific mRNA turnover in Trypanosoma brucei
-
doi: 10.1128/EC.05097-11
-
Utter, C., Garcia, S., Milone, J., and Bellofatto, V. (2011). Poly(A)-specific Ribonuclease (PARN-1) function in stage-specific mRNA turnover in Trypanosoma brucei. Eukaryot. Cell 10, 1230-1240. doi: 10.1128/EC.05097-11
-
(2011)
Eukaryot. Cell
, vol.10
, pp. 1230-1240
-
-
Utter, C.1
Garcia, S.2
Milone, J.3
Bellofatto, V.4
|