Agrobacterium tumefaciens-mediated transformation of the lichen fungus, Umbilicaria muehlenbergii

PLoS ONE

Volumn 8, Issue 12, 2013, Pages

  Park, Sook Young ^a,b   Jeong, Min Hye ^a   Wang, Hai Ying ^c   Kim, Jung A ^a   Yu, Nan Hee ^a   Kim, Sungbeom ^b   Cheong, Yong Hwa ^a   Kang, Seogchan ^d   Lee, Yong Hwan ^b   Hur, Jae Seoun ^a  

^a Sunchon National University   (South Korea)

^b Seoul National University   (South Korea)

^c SHANDONG NORMAL UNIVERSITY   (China)

^d PENNSYLVANIA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AGROBACTERIUM TUMEFACIENS; ASCOMYCOTA; DNA, BACTERIAL; GENES, FUNGAL; GENETIC ENGINEERING; GREEN FLUORESCENT PROTEINS; MUTATION; PHENOTYPE; TRANSFORMATION, GENETIC;

EID: 84893610457     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0083896     Document Type: Article

References (62)

1. Daboussi MJ, Djeballi A, Gerlinger C, Blaiseau PL, Bouvier I, et al. (1989) Transformation of seven species of filamentous fungi using the nitrate reductase gene of Aspergillus nidulans . Curr Genet 15: 453-456.
2. Leung H, Lehtinen U, Karjalainen R, Skinner D, Tooley P, et al. (1990) Transformation of the rice blast fungus Magnaporthe grisea to hygromycin B resistance. Curr Genet 17: 409-411. (Pubitemid 20172937)
3. Marmeisse R, Gay G, Debaud JC, Casselton LA (1992) Genetic transformation of the symbiotic basidiomycete fungus Hebeloma cylindrosporum. Curr Genet 22: 41-45.
4. Bundock P, den Dulk-Ras A, Beijersbergen A, Hooykaas PJ (1995) Transkingdom T-DNA transfer from Agrobacterium tumefaciens to Saccharomyces cerevisiae. EMBO J 14: 3206-3214.
5. de Groot MJ, Bundock P, Hooykaas PJ, Beijersbergen AG (1998) Agrobacterium tumefaciens-mediated transformation of filamentous fungi. Nat Biotechnol 16: 839-842. (Pubitemid 28405853)
6. Frandsen RJN (2011) A guide to binary vectors and strategies for targeted genome modification in fungi using Agrobacterium tumefaciens-mediated transformation. J of Microbiol Methods 87: 247-262.
7. Khang C, Park S, Lee Y, Kang S (2005) A dual selection based, targeted gene replacement tool for Magnaporthe grisea and Fusarium oxysporum. Fungal Genet Biol 42: 483-492. (Pubitemid 40694189)
8. Mullins E, Romaine CP, Chen X, Geiser D, Raina R, et al. (2001) Agrobacterium tumefaciens-mediated transformation of Fusarium oxysporum: An efficient tool for insertional mutagenesis and gene transfer. Phytopathology 91: 173-180. (Pubitemid 32106557)
9. Paz Z, Garcia-Pedrajas MD, Andrews DL, Klosterman SJ, Baeza-Montanez L, et al. (2011) One step construction of Agrobacterium-recombination-ready- plasmids (OSCAR), an efficient and robust tool for ATMT based gene deletion construction in fungi. Fungal Genet Biol 48: 677-684.
10. Islam MN, Nizam S, Verma PK (2012) A highly efficient Agrobacterium mediated transformation system for chickpea wilt pathogen Fusarium oxysporum f. sp. ciceri using DsRed-Express to follow root colonisation. Microbiol Res 167: 332-338.
11. Jeon J, Park SY, Chi MH, Choi J, Park J, et al. (2007) Genome-wide functional analysis of pathogenicity genes in the rice blast fungus. Nat Genet 39: 561-565. (Pubitemid 46514781)
12. Liu H, Bao X (2009) Overexpression of the chitosanase gene in Fusarium solani via Agrobacterium tumefaciens-mediated transformation. Curr Microbiol 58: 279-282.
13. Munch S, Ludwig N, Floss DS, Sugui JA, Koszucka AM, et al. (2011) Identification of virulence genes in the corn pathogen Colletotrichum graminicola by Agrobacterium tumefaciens-mediated transformation. Mol Plant Pathol 12: 43-55.
14. Kim HS, Park SY, Lee S, Adams EL, Czymmek K, et al. (2011) Loss of cAMP-dependent protein kinase A affects multiple traits important for root pathogenesis by Fusarium oxysporum. Mol Plant-Microbe Interact 24: 719-732.
15. Gouka RJ, Gerk C, Hooykaas PJ, Bundock P, Musters W, et al. (1999) Transformation of Aspergillus awamori by Agrobacterium tumefaciens-mediated homologous recombination. Nat Biotechnol 17: 598-601. (Pubitemid 29262926)
16. Hawksworth DL, Kirk PM, Sutton BC, Pegler DN (1995) Dictionary of the Fungi. Wallingford: CAB.
17. Lutzoni F, Pagel M, Reeb V (2001) Major fungal lineages are derived from lichen symbiotic ancestors. Nature 411: 937-940. (Pubitemid 32601487)
18. Huneck S (1999) The significance of lichens and their metabolites. Naturwis-senschaften 86: 559-570.
19. Nishikawa Y, Ohno H (1981) Studies on the water-soluble constituents of lichens. IV. Effect of antitumor lichen-glucans and related derivatives on the phagocytic activity of the reticuloendothelial system in mice. Chem Pharm Bull (Tokyo) 29: 3407-3410. (Pubitemid 12104324)
20. Rezanka T, Dembitsky VM (2006) The colleflaccinosides, two chiral bianthraquinone glycosides with antitumor activity from the lichen Collema flaccidum collected in Israel and Russia. Nat Prod Res 20: 969-980. (Pubitemid 44144711)
21. Watanabe M, Iwai K, Shibata S, Takahashi K, Narui T, et al. (1986) Purification and characterization of mouse alpha 1-acid glycoprotein and its possible role in the antitumor activity of some lichen polysaccharides. Chem Pharm Bull (Tokyo) 34: 2532-2541. (Pubitemid 16056460)
22. Candan M, Yilmaz M, Tay T, Erdem M, Turk AO (2007) Antimicrobial activity of extracts of the lichen Parmelia sulcata and its salazinic acid constituent. Z Naturforsch C 62: 619-621. (Pubitemid 47403775)
23. Candan M, Yilmaz M, Tay T, Kivanc M, Turk H (2006) Antimicrobial activity of extracts of the lichen Xanthoparmelia pokornyi and its gyrophoric and stenosporic acid constituents. Z Naturforsch C 61: 319-323. (Pubitemid 44073420)
24. Cansaran D, Kahya D, Yurdakulola E, Atakol O (2006) Identification and quantitation of usnic acid from the lichen Usnea species of Anatolia and antimicrobial activity. Z Naturforsch C 61: 773-776. (Pubitemid 46159128)
25. Gambichler T, Skrygan M, Tigges C, Kobus S, Glaser R, et al. (2009) Significant upregulation of antimicrobial peptides and proteins in lichen sclerosus. Br J Dermatol 161: 1136-1142.
26. Garcia Rowe J, Garcia Gimenez MD, Saenz Rodriguez MT (1999) Some lichen products have antimicrobial activity. Z Naturforsch C 54: 605-609. (Pubitemid 29414027)
27. Gollapudi SR, Telikepalli H, Jampani HB, Mirhom YW, Drake SD, et al. (1994) Alectosarmentin, a new antimicrobial dibenzofuranoid lactol from the lichen, Alectoria sarmentosa. J Nat Prod 57: 934-938. (Pubitemid 24271327)
28. Ingolfsdottir K, Bloomfield SF, Hylands PJ (1985) In vitro evaluation of the antimicrobial activity of lichen metabolites as potential preservatives. Antimicrob Agents Chemother 28: 289-292. (Pubitemid 15019963)
29. Ivanova V, Backor M, Dahse HM, Graefe U (2010) Molecular structural studies of lichen substances with antimicrobial, antiproliferative, and cytotoxic effects from Parmelia subrudecta . Prep Biochem Biotechnol 40: 377-388.
30. Manojlovic NT, Vasiljevic PJ, Maskovic PZ, Juskovic M, Bogdanovic-Dusanovic G (2012) Chemical Composition, Antioxidant, and Antimicrobial Activities of Lichen Umbilicaria cylindrica (L.) Delise (Umbilicariaceae). Evid Based Complement Alternat Med 2012: 452431.
31. Mitrovic T, Stamenkovic S, Cvetkovic V, Tosic S, Stankovic M, et al. (2011) Antioxidant, antimicrobial and antiproliferative activities of five lichen species. Int J Mol Sci 12: 5428-5448.
32. Rankovic B, Rankovic D, Maric D (2010) Antioxidant and antimicrobial activity of some lichen species. Mikrobiologiia 79: 812-818.
33. Tay T, Turk AO, Yilmaz M, Turk H, Kivanc M (2004) Evaluation of the antimicrobial activity of the acetone extract of the lichen Ramalina farinacea and its (+)- usnic acid, norstictic acid, and protocetraric acid constituents. Z Naturforsch C 59: 384-388. (Pubitemid 38861677)
34. Turk AO, Yilmaz M, Kivanc M, Turk H (2003) The antimicrobial activity of extracts of the lichen Cetraria aculeata and its protolichesterinic acid constituent. Z Naturforsch C 58: 850-854. (Pubitemid 38069719)
35. Turk H, Yilmaz M, Tay T, Turk AO, Kivanc M (2006) Antimicrobial activity of extracts of chemical races of the lichen Pseudevernia furfuracea and their physodic acid, chloroatranorin, atranorin, and olivetoric acid constituents. ZNaturforsch C 61: 499-507. (Pubitemid 44367443)
36. Yilmaz M, Tay T, Kivanc M, Turk H, Turk AO (2005) The antimicrobial activity of extracts of the lichen Hypogymnia tubulosa and its 3-hydroxyphysodic acid constituent. Z Naturforsch C 60: 35-38. (Pubitemid 40359106)
37. Yilmaz M, Turk AO, Tay T, Kivanc M (2004) The antimicrobial activity of extracts of the lichen Cladonia foliacea and its (-)-usnic acid, atranorin, and fumarprotocetraric acid constituents. Z Naturforsch C 59: 249-254. (Pubitemid 38497884)
38. Harmala P, Hiltunen R, Oksman-Caldentey KM, Laakso T, Kauppinen V (1992) Isolation and in vitro cultivation of lichen algae and their antimicrobial properties. Fitoterapia 58: 217.
39. Bugni TS, Andjelic CD, Pole AR, Rai P, Ireland CM, et al. (2009) Biologically active components of a Papua New Guinea analgesic and anti-inflammatory lichen preparation. Fitoterapia 80: 270-273.
40. Tanas S, Odabasoglu F, Halici Z, Cakir A, Aygun H, et al. (2010) Evaluation of anti-inflammatory and antioxidant activities of Peltigera rufescens lichen species in acute and chronic inflammation models. J Nat Med 64: 42-49.
41. Nash ITH (1996) Lichen Biology; Nash THI, editor. Cambridge: Cambridge University Press.
42. Culberson CF, Armaleo D (1992) Induction of a complete secondary-product pathway in a cultured lichen fungus. Exp Mycol 16: 52-63.
43. Huneck S, Yaoshimura I (1996) Identification of Lichen Substances: Springer-Verlaq.
44. Gagunashvili AN, Davidsson SP, Jonsson ZO, Andresson OS (2009) Cloning and heterologous transcription of a polyketide synthase gene from the lichen Solorina crocea. Mycol Res 113: 354-363.
45. Simmenmann SJ, Andresson OS, Brown DW, Miao VPW (2000) Cloning and heterologous expression of Solorina crocea pyrG. Curr Genet 2000: 333-338. (Pubitemid 30307347)
46. Molina MC, Crespo A (2000) Comparison of development of axenic cultures of five species of lichen-forming fungi. Mycol Res 104: 595-602.
47. McDonald TR, Mueller O, Dietrich FS, Lutzoni F (2013) High-throughput genome sequencing of lichenizing fungi to assess gene loss in the ammonium transporter/ammonia permease gene family. BMC Genomics 14: 225.
48. Hirabayashi K, Iwata S, Ito M, Shigeta S, Narui T, et al. (1989) Inhibitory effect of a lichen polysaccharide sulfate, GE-3-S, on the replication of human immunodeficiency virus (HIV) in vitro. Chem Pharm Bull (Tokyo) 37: 2410-2412. (Pubitemid 19251619)
49. Nishikawa Y, Tanaka M, Shibata S, Fukuoka F (1970) Polysaccharides of lichens and fungi. IV. Antitumour active O-acetylated pustulan-type glucans from the lichens of Umbilicaria species. Chem Pharm Bull (Tokyo) 18: 1431-1434.
50. Stepanenko LS, Maksimov OB, Fedoreev SA, Miller GG (1998) Polysaccharides of lichens and their sulfated derivatives: antivial activity. Chem Nat Compd 34: 337-338.
51. Yamammoto Y, Kinoshita Y, Yoshimura I (2002) Culture of thallus fragments and redifferentiation of lichen; Kranner I, Beckett RP, Varma AK, editors. Berlin: Springer. 34-46 p.
52. Choi J, Park J, Jeon J, Chi MH, Goh J, et al. (2007) Genome-wide analysis of T-DNA integration into the chromosomes of Magnaporthe oryzae. Mol Microbiol 66: 371-382. (Pubitemid 47482380)
53. Bundock P, Hooykaas PJ (1996) Integration of Agrobacterium tumefaciens T-DNA in the Saccharomyces cerevisiae genome by illegitimate recombination. Proc Natl Acad Sci U S A 93: 15272-15275. (Pubitemid 27009589)
54. Meza TJ, Stangeland B, Mercy IS, Skarn M, Nymoen DA, et al. (2002) Analyses of single-copy Arabidopsis T-DNA-transformed lines show that the presence of vector backbone sequences, short inverted repeats and DNA methylation is not sufficient or necessary for the induction of transgene silencing. Nucleic Acids Res 30: 4556-4566. (Pubitemid 35277266)
55. Sha Y, Li S, Pei Z, Luo L, Tian Y, et al. (2004) Generation and flanking sequence analysis of a rice T-DNA tagged population. Theor Appl Genet 108: 306-314. (Pubitemid 38162213)
56. Marchand G, Fortier E, Neveu B, Bolduc S, Belzile F, et al. (2007) Alternative methods for genetic transformation of Pseudozyma antarctica, a basidiomycetous yeast-like fungus. J Microbiol Methods 70: 519-527. (Pubitemid 47302154)
57. Rho HS, Kang S, Lee YH (2001) Agrobacterium tumefaciens-mediated transformation of the plant pathogenic fungus, Magnaporthe grisea. Mol Cells 12: 407-411.
58. Chen EC, Su YH, Kanagarajan S, Agrawal DC, Tsay HS (2009) Development of an activation tagging system for the basidiomycetous medicinal fungus Antrodia cinnamomea. Mycol Res 113: 290-297.
59. Winans SC (1992) Two-way chemical signaling in Agrobacterium-plant interactions. Microbiol Rev 56: 12-31.
60. Maruthachalam K, Klosterman SJ, Kang S, Hayes RJ, Subbarao KV (2011) Identification of pathogenicity-related genes in the vascular wilt fungus Verticillium dahliae by Agrobacterium tumefaciens-mediated T-DNA insertional mutagenesis. Mol Biotechnol 49: 209-221.
61. Gustin MC, Albertyn J, Alexander M, Davenport K (1998) MAP kinase pathways in the yeast Saccharomyces cerevisiae. Microbiol Mol Biol Rev 62: 1264-1300. (Pubitemid 28558299)
62. Hooykaas PJJ, Roobol C, Schilperoort RA (1979) Regulation of the transfer of Ti-plasmids of Agrobacterium tumefaciens. J Gen Microbiol 110: 99-109. (Pubitemid 9084157)