Bacterial community compositions of tomato (Lycopersicum esculentum Mill.) seeds and plant growth promoting activity of ACC deaminase producing Bacillus subtilis (HYT-12-1) on tomato seedlings

World Journal of Microbiology and Biotechnology

Volumn 30, Issue 3, 2014, Pages 835-845

  Xu, Mingshuang ^a   Sheng, Jiping ^b   Chen, Lin ^a   Men, Yejun ^a   Gan, Lin ^a   Guo, Shuntang ^a   Shen, Lin ^a  

^a CHINA AGRICULTURAL UNIVERSITY   (China)

^b RENMIN UNIVERSITY OF CHINA   (China)

Author keywords

ACC deaminase; Bacillus; Endophytic bacteria; PGP; Tomato seeds

Indexed keywords

1 AMINOCYCLOPROPANE 1 CARBOXYLATES; ACC DEAMINASE; BACTERIAL COMMUNITY COMPOSITION; ENDOPHYTIC BACTERIA; PGP; PHOSPHATE SOLUBILIZATION; RESTRICTION FRAGMENT LENGTH POLYMORPHISMS; TOMATO SEED;

BACILLI; BACTERIA; BACTERIOLOGY; FRUITS; GENES; INDUSTRIAL APPLICATIONS; NITROGEN FIXATION; POLYMERASE CHAIN REACTION; RNA;

SEED;

1 AMINOCYCLOPROPANECARBOXYLATE DEAMINASE; 1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE; BACTERIAL DNA; GROWTH PROMOTING ACTIVITY; LYASE; NERVE GROWTH FACTOR; RIBOSOME DNA; RNA 16S;

ARTICLE; BACILLUS SUBTILIS; BIOTA; CHEMISTRY; CLASSIFICATION; DNA SEQUENCE; ENZYMOLOGY; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYSIOLOGY; PLANT DEVELOPMENT; PLANT SEED; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SECRETION (PROCESS); SEEDLING; TOMATO;

BACILLUS SUBTILIS; BIOTA; CARBON-CARBON LYASES; DNA, BACTERIAL; DNA, RIBOSOMAL; LYCOPERSICON ESCULENTUM; MOLECULAR SEQUENCE DATA; NERVE GROWTH FACTORS; PLANT DEVELOPMENT; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; RNA, RIBOSOMAL, 16S; SEEDLING; SEEDS; SEQUENCE ANALYSIS, DNA;

EID: 84893560602     PISSN: 09593993     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11274-013-1486-y     Document Type: Article

References (47)

1. Adesemoye AO, Torbert HA, Kloepper JW (2009) Plant growth-promoting rhizobacteria allow reduced application rates of chemical fertilizers. Microb Ecol 58: 921-929.
2. Ahmad F, Ahmad I, Khan MS (2008) Screening of free-living rhizospheric bacteria for their multiple plant growth promoting activities. Microbiol Res 163: 173-181.
3. Ali S, Charles TC, Glick BR (2012) Delay of flower senescence by bacterial endophytes expressing 1-aminocyclopropane-1-carboxylate deaminase. J Appl Microbiol 113: 1139-1144.
4. Barnawal D, Bharti N, Maji D, Chanotiya CS, Kalra A (2012) 1-aminocyclopropane-1-carboxylic acid (ACC) deaminase-containing rhizobacteria protect Ocimum sanctum plants during waterlogging stress via reduced ethylene generation. Plant Physiol Bioch 58: 227-235.
5. Bashan Y, Holguin G, Lifshitz R (1993) Isolation and characterization of plant growth-promoting rhizobacteria. In: Glick BR, Thompson JE (eds) Methods in plant molecular biology and biotechnology. CRC Press, USA, pp 331-345.
6. Beneduzi A, Peres D, Vargas LK, Bodanese-Zanettini MH, Passaglia LMP (2008) Evaluation of genetic diversity and plant growth promoting activities of nitrogen-fixing bacilli isolated from rice fields in South Brazil. Appl Soil Ecol 39: 311-320.
7. Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72: 248-254.
8. Cankar K, Kraigher H, Ravnikar M, Rupnik M (2005) Bacterial endophytes from seeds of Norway spruce (Picea abies L. Karst). FEMS Microbiol Lett 244: 341-345.
9. Cavaglieri L, Orlando J, Etcheverry M (2009) Rhizosphere microbial community structure at different maize plant growth stages and root locations. Microbiol Res 164: 391-399.
10. Chen YP, Rekha PD, Arun AB, Shen FT, Lai WA, Yong CC (2006) Phosphate solubilizing bacteria from subtropical soil and their tricalcium phosphate solubilizing abilities. Appl Soil Ecol 34: 33-41.
11. Compant S, Clément C, Sessitsch A (2010) Plant growth-promoting bacteria in the rhizo- and endosphere of plants: their role, colonization, mechanisms involved and prospects for utilization. Soil Biol Biochem 42: 669-678.
12. de Santi Ferrara FI, Oliveira ZM, Gonzales HHS, Floh EIS, Barbosa HR (2012) Endophytic and rhizospheric enterobacteria isolated from sugar cane have different potentials for producing plant growth-promoting substances. Plant Soil 353: 409-417.
13. Deepa CK, Dastager SG, Pandey A (2010) Isolation and characterization of plant growth promoting bacteria from non-rhizospheric soil and their effect on cowpea (Vignaunguiculata (L.) Walp.) seedling growth. World J Microbiol Biotech 26: 1233-1240.
14. Enya J, Shinohara H, Yoshida S, Tsukiboshi T, Negishi H, Suyama K, Tsushima S (2007) Culturable leaf-associated bacteria on tomato plants and their potential as biological control agents. Microb Ecol 53: 524-536.
15. Glick BR (2005) Modulation of plant ethylene levels by the bacterial enzyme ACC deaminase. FEMS Micobiol Lett 251: 1-7.
16. Glick BR, Karaturovic DM, Newell PC (1995) A novel procedure for rapid isolation of plant growth promoting pseudomonads. Can J Microbiol 41: 533-536.
17. Hardoim PR, van Overbeek LS, van Elsas JD (2008) Properties of bacterial endophytes and their proposed role in plant growth. Trends Microbiol 16: 463-471.
18. Hardoim PR, Hardoim CC, van Overbeek LS, van Elsas JD (2012) Dynamics of seed-borne rice endophytes on early plant growth stages. PLoS One 7: e30438.
19. Jalili F, Khavazi K, Pazira E, Nejati A, Rahmani HA, Sadaghiani HR, Miransari M (2009) Isolation and characterization of ACC deaminase-producing fluorescent pseudomonads, to alleviate salinity stress on canola (Brassica napus L.) growth. J Plant Physiol 166: 667-674.
20. Jha CK, Patel B, Saraf M (2012) Stimulation of the growth of Jatropha curcas by the plant growth promoting bacterium Enterobacter cancerogenus MSA2. World J Microbiol Biotech 28: 891-899.
21. Jones DL, Darrah PR (1994) Role of root derived organic acids in the mobilization of nutrients from the rhizosphere. Plant Soil 166: 247-257.
22. Lambrecht M, Okon Y, Vande Broek A, Vanderleyden J (2000) Indole-3-acetic acid: a reciprocal signalling molecule in bacteria-plant interactions. Trends Microbiol 8: 298-300.
23. Li Z, Chang S, Lin L, Li Y, An Q (2011) A colorimetric assay of 1-aminocyclopropane-1-carboxylate (ACC) based on ninhydrin reaction for rapid screening of bacteria containing ACC deaminase. Lett Appl Microbiol 53: 178-185.
24. Logan NA, Berkeley RCW (1984) Identification of Bacillus strains using the API system. J Gen Microbiol 130: 1871-1882.
25. Mano H, Tanaka F, Nakamura C, Kaga H, Morisaki H (2007) Culturable endophytic bacterial flora of the maturing leaves and roots of rice plants (Oryza sativa) cultivated in a paddy field. Microbes Environ 22: 175-185.
26. Montañez A, Blanco AR, Barlocco C, Beracochea M, Sicardi M (2012) Characterization of cultivable putative endophytic plant growth promoting bacteria associated with maize cultivars (Zea mays L.) and their inoculation effects in vitro. Appl Soil Ecol 58: 21-28.
27. Murphy J, Riley JP (1962) A modified single solution method for the determination of phosphate in natural waters. Anal Chim Acta 27: 31-36.
28. Nautiyal CS (1999) An efficient microbiological growth medium for screening phosphate solubilizing microorganisms. FEMS Microbiol Lett 170: 265-270.
29. Nicholson WL, Munakata N, Horneck G, Melosh HJ, Setlow P (2000) Resistance of Bacillus endospores to extreme terrestrial and extraterrestrial environments. Microbiol Mol Biol Rev 64: 548-572.
30. Okunishi S, Sako K, Mano H, Imamura A, Morisaki H (2005) Bacterial flora of endophytes in the maturing seed of cultivated rice (Oryza sativa). Microbes Environ 20: 168-177.
31. Onofre-Lemus J, Hernández-Lucas I, Girard L, Caballero-Mellado J (2009) ACC (1-aminocyclopropane-1-carboxylate) deaminase activity, a widespread trait in Burkholderia species, and its growth-promoting effect on tomato plants. Appl Environ Microb 75: 6581-6590.
32. Ottesen AR, Peña AG, White JR, Pettengill JB, Li C, Allard S, Rideout S, Allard M, Hill T, Evans P, Strain P, Strain E, Musser S, Knight R, Brown E (2013) Baseline survey of the anatomical microbial ecology of an important food plants: Solanum lycopersicum (tomato). BMC Microbiol 13: 114.
33. Patel D, Jha CK, Tank N, Saraf M (2012) Growth enhancement of chickpea in saline soils using plant growth-promoting rhizobacteria. J Plant Growth Regul 31: 53-62.
34. Penrose DM, Glick BR (2003) Methods for isolating and characterizing ACC deaminase-containing plant growth-promoting rhizobacteria. Physiol Plant 118: 10-15.
35. Rashid S, Charles TC, Glick BR (2012) Isolation and characterization of new plant growth-promoting bacterial endophytes. Appl Soil Ecol 61: 217-224.
36. Ribeiro CM, Cardoso EJBN (2012) Isolation, selection and characterization of root-associated growth promoting bacteria in Brazil Pine (Araucaria angustifolia). Microbiol Res 167: 69-78.
37. Rijavec T, Lapanje A, Dermastia M, Rupnik M (2007) Isolation of bacterial endophytes from germinated maize kernels. Can J Microbiol 53: 802-808.
38. Schallmey M, Singh A, Ward OP (2004) Developments in the use of Bacillus species for industrial production. Can J Microbiol 50: 1-17.
39. Schwyn B, Neilands JB (1987) Universal chemical assay for the detection and determination of siderophores. Anal Biochem 160: 47-56.
40. Shen M, Kang YJ, Wang HL, Zhang XS, Zhao QX (2012) Effect of plant growth-promoting rhizobacteria (PGPRs) on plant growth, yield, and quality of tomato (Lycopersicon esculentum Mill.) under simulated seawater irrigation. J Gen Appl Microbiol 58: 253-262.
41. Shi X, Wu Z, Namvar A, Kostrzynska M, Dunfield K, Warriner K (2009) Microbial population profiles of the microflora associated with pre- and postharvest tomatoes contaminated with Salmonella typhimurium or Salmonella montevideo. J Appl Microbiol 107: 329-338.
42. Singh MK, Singh DP, Mesapogu S, Babu BK, Bontemps C (2011) Concomitant colonization of nifH positive endophytic Burkholderia sp. in rice (Oryza sativa L.) promotes plant growth. World J Microbiol Biotech 27: 2023-2031.
43. Sun Y, Cheng Z, Glick BR (2009) The presence of a 1-aminocyclopropane-1-carboxylate (ACC) deaminase deletion mutation alters the physiology of the endophytic plant growth-promoting bacterium Burkholderia phytofirmans PsJN. FEMS Microbiol Lett 296: 131-136.
44. Vauterin L, Vauterin P (1992) Computer-aided objective comparison of electrophoresis patterns for grouping and identification of microorganisms. Eur Microbiol 1: 37-41.
45. Vendan RT, Yu YJ, Lee SH, Rhee YH (2010) Diversity of endophytic bacteria in ginseng and their potential for plant growth promotion. J Microbiol 48: 559-565.
46. Weisburg WG, Barns SM, Pelletier DA, Lane DJ (1991) 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173(2): 697-703.
47. Zhang YF, He LY, Chen ZJ, Zhang WH, Wang QY, Qian M, Sheng XF (2011) Characterization of lead-resistant and ACC deaminase-producing endophytic bacteria and their potential in promoting lead accumulation of rape. J Hazard Mater 186: 1720-1725.