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Volumn 8, Issue 12, 2013, Pages

Transient growth arrest in Escherichia coli induced by chromosome condensation

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; ESCHERICHIA COLI PROTEIN; MUKB PROTEIN, E COLI; NONHISTONE PROTEIN;

EID: 84893472159     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0084027     Document Type: Article
Times cited : (7)

References (46)
  • 1
    • 0033229882 scopus 로고    scopus 로고
    • Complex formation of MukB, MukE and MukF proteins involved in chromosome partitioning in Escherichia coli
    • DOI 10.1093/emboj/18.21.5873
    • Yamazoe M, Onogi T, Sunako Y, Niki H, Yamanaka K, et al. (1999) Complex formation of MukB, MukE and MukF proteins involved in chromosome partitioning in Escherichia coli. EMBO J 18: 5873-5884. (Pubitemid 29515664)
    • (1999) EMBO Journal , vol.18 , Issue.21 , pp. 5873-5884
    • Yamazoe, M.1    Onogi, T.2    Sunako, Y.3    Niki, H.4    Yamanaka, K.5    Ichimura, T.6    Hiraga, S.7
  • 2
    • 0029944542 scopus 로고    scopus 로고
    • Identification of two new genes, mukE and mukF, involved in chromosome partitioning in Escherichia coli
    • Yamanaka K, Ogura T, Niki H, Hiraga S (1996) Identification of two new genes, mukE and mukF, involved in chromosome partitioning in Escherichia coli. Mol Gen Genet 250: 241-251.
    • (1996) Mol Gen Genet , vol.250 , pp. 241-251
    • Yamanaka, K.1    Ogura, T.2    Niki, H.3    Hiraga, S.4
  • 3
    • 33845933677 scopus 로고    scopus 로고
    • Antagonistic interactions of kleisins and DNA with bacterial condensin MukB
    • DOI 10.1074/jbc.M606723200
    • Petrushenko ZM, Lai CH, Rybenkov VV (2006) Antagonistic interactions of kleisins and DNA with bacterial condensin MukB. J Biol Chem 281: 34208-34217. (Pubitemid 46036629)
    • (2006) Journal of Biological Chemistry , vol.281 , Issue.45 , pp. 34208-34217
    • Petrushenko, Z.M.1    Lai, C.-H.2    Rybenkov, V.V.3
  • 4
    • 34548348945 scopus 로고    scopus 로고
    • MukB colocalizes with the oriC region and is required for organization of the two Escherichia coli chromosome arms into separate cell halves
    • DOI 10.1111/j.1365-2958.2007.05881.x
    • Danilova O, Reyes-Lamothe R, Pinskaya M, Sherratt D, Possoz C (2007) MukB colocalizes with the oriC region and is required for organization of the two Escherichia coli chromosome arms into separate cell halves. Mol Microbiol 65: 1485-1492. (Pubitemid 47347830)
    • (2007) Molecular Microbiology , vol.65 , Issue.6 , pp. 1485-1492
    • Danilova, O.1    Reyes-Lamothe, R.2    Pinskaya, M.3    Sherratt, D.4    Possoz, C.5
  • 5
    • 59649108328 scopus 로고    scopus 로고
    • Towards the architecture of the chromosomal architects
    • Rybenkov VV (2009) Towards the architecture of the chromosomal architects. Nat Struct Mol Biol 16: 104-105.
    • (2009) Nat Struct Mol Biol , vol.16 , pp. 104-105
    • Rybenkov, V.V.1
  • 6
    • 33646175146 scopus 로고    scopus 로고
    • DNA reshaping by MukB: Right-handed knotting, left-handed supercoiling
    • DOI 10.1074/jbc.M504754200
    • Petrushenko ZM, Lai CH, Rai R, Rybenkov VV (2006) DNA reshaping by MukB. Right-handed knotting, left-handed supercoiling. J Biol Chem 281: 4606-4615. (Pubitemid 43847719)
    • (2006) Journal of Biological Chemistry , vol.281 , Issue.8 , pp. 4606-4615
    • Petrushenko, Z.M.1    Lai, C.-H.2    Rai, R.3    Rybenkov, V.V.4
  • 8
    • 47049094613 scopus 로고    scopus 로고
    • ATP-induced shrinkage of DNA with MukB protein and the MukBEF complex of Escherichia coli
    • Chen N, Zinchenko AA, Yoshikawa Y, Araki S, Adachi S, et al. (2008) ATP-induced shrinkage of DNA with MukB protein and the MukBEF complex of Escherichia coli. J Bacteriol 190: 3731-3737.
    • (2008) J Bacteriol , vol.190 , pp. 3731-3737
    • Chen, N.1    Zinchenko, A.A.2    Yoshikawa, Y.3    Araki, S.4    Adachi, S.5
  • 9
    • 77949570558 scopus 로고    scopus 로고
    • Mechanics of DNA bridging by bacterial condensin MukBEF in vitro and in singulo
    • Petrushenko ZM, Cui Y, She W, Rybenkov VV (2010) Mechanics of DNA bridging by bacterial condensin MukBEF in vitro and in singulo. Embo J 29: 1126-1135.
    • (2010) Embo J , vol.29 , pp. 1126-1135
    • Petrushenko, Z.M.1    Cui, Y.2    She, W.3    Rybenkov, V.V.4
  • 10
    • 58149152843 scopus 로고    scopus 로고
    • Structural Studies of a Bacterial Condensin Complex Reveal ATP-Dependent Disruption of Intersubunit Interactions
    • Woo JS, Lim JH, Shin HC, Suh MK, Ku B, et al. (2009) Structural Studies of a Bacterial Condensin Complex Reveal ATP-Dependent Disruption of Intersubunit Interactions. Cell 136: 85-96.
    • (2009) Cell , vol.136 , pp. 85-96
    • Woo, J.S.1    Lim, J.H.2    Shin, H.C.3    Suh, M.K.4    Ku, B.5
  • 11
    • 34948861677 scopus 로고    scopus 로고
    • MukEF is required for stable association of MukB with the chromosome
    • DOI 10.1128/JB.00770-07
    • She W, Wang Q, Mordukhova EA, Rybenkov VV (2007) MukEF is required for stable association of MukB with the chromosome. J Bacteriol 189: 7062-7068. (Pubitemid 47525451)
    • (2007) Journal of Bacteriology , vol.189 , Issue.19 , pp. 7062-7068
    • She, W.1    Wang, Q.2    Mordukhova, E.A.3    Rybenkov, V.V.4
  • 12
    • 0034995291 scopus 로고    scopus 로고
    • Different localization of SeqA-bound nascent DNA clusters and MukF-MukE-MukB complex in Escherichia coli cells
    • DOI 10.1046/j.1365-2958.2001.02447.x
    • Ohsumi K, Yamazoe M, Hiraga S (2001) Different localization of SeqA-bound nascent DNA clusters and MukF-MukE- MukB complex in Escherichia coli cells. Mol Microbiol 40: 835-845. (Pubitemid 32523181)
    • (2001) Molecular Microbiology , vol.40 , Issue.4 , pp. 835-845
    • Ohsumi, K.1    Yamazoe, M.2    Hiraga, S.3
  • 13
    • 84873055622 scopus 로고    scopus 로고
    • Mutational analysis of MukE reveals its role in focal subcellular localization of MukBEF
    • She W, Mordukhova E, Zhao H, Petrushenko ZM, Rybenkov VV (2013) Mutational analysis of MukE reveals its role in focal subcellular localization of MukBEF. Mol Microbiol 87: 539-552.
    • (2013) Mol Microbiol , vol.87 , pp. 539-552
    • She, W.1    Mordukhova, E.2    Zhao, H.3    Petrushenko, Z.M.4    Rybenkov, V.V.5
  • 14
    • 84867760568 scopus 로고    scopus 로고
    • In vivo architecture and action of bacterial structural maintenance of chromosome proteins
    • Badrinarayanan A, Reyes-Lamothe R, Uphoff S, Leake MC, Sherratt DJ (2012) In vivo architecture and action of bacterial structural maintenance of chromosome proteins. Science 338: 528-531.
    • (2012) Science , vol.338 , pp. 528-531
    • Badrinarayanan, A.1    Reyes-Lamothe, R.2    Uphoff, S.3    Leake, M.C.4    Sherratt, D.J.5
  • 15
    • 0026069582 scopus 로고
    • The new gene mukB codes for a 177 kd protein with coiled-coil domains involved in chromosome partitioning of E.coli
    • Niki H, Jaffe A, Imamura R, Ogura T, Hiraga S (1991) The new gene mukB codes for a 177 kd protein with coiled-coil domains involved in chromosome partitioning of E. coli. EMBO J 10: 183-193. (Pubitemid 21905281)
    • (1991) EMBO Journal , vol.10 , Issue.1 , pp. 183-193
    • Niki, H.1    Jaffe, A.2    Imamura, R.3    Ogura, T.4    Hiraga, S.5
  • 16
    • 33744983959 scopus 로고    scopus 로고
    • Chromosome condensation in the absence of the non-SMC subunits of MukBEF
    • DOI 10.1128/JB.00313-06
    • Wang Q, Mordukhova EA, Edwards AL, Rybenkov VV (2006) Chromosome condensation in the absence of the non-SMC subunits of MukBEF. J Bacteriol 188: 4431-4441. (Pubitemid 43865763)
    • (2006) Journal of Bacteriology , vol.188 , Issue.12 , pp. 4431-4441
    • Wang, Q.1    Mordukhova, E.A.2    Edwards, A.L.3    Rybenkov, V.V.4
  • 17
    • 77952563068 scopus 로고    scopus 로고
    • Condensin and cohesin complexity: The expanding repertoire of functions
    • Wood AJ, Severson AF, Meyer BJ (2010) Condensin and cohesin complexity: the expanding repertoire of functions. Nat Rev Genet 11: 391-404.
    • (2010) Nat Rev Genet , vol.11 , pp. 391-404
    • Wood, A.J.1    Severson, A.F.2    Meyer, B.J.3
  • 18
    • 0026573628 scopus 로고
    • Lethal overproduction of the Escherichia coli nucleoid protein H-NS: Ultramicroscopic and molecular autopsy
    • Spurio R, Dürrenberger M, Falconi M, La Teana A, Pon CL, et al. (1992) Lethal overproduction of the Escherichia coli nucleoid protein H-NS: ultramicroscopic and molecular autopsy. Molecular and General Genetics 231: 201-211.
    • (1992) Molecular and General Genetics , vol.231 , pp. 201-211
    • Spurio, R.1    Dürrenberger, M.2    Falconi, M.3    La Teana, A.4    Pon, C.L.5
  • 19
    • 0028589873 scopus 로고
    • H-NS over-expression induces an artificial stationary phase by silencing global transcription
    • McGovern V, Higgins NP, Chiz RS, Jaworski A (1994) H-NS over-expression induces an artificial stationary phase by silencing global transcription. Biochimie 76: 1019-1029.
    • (1994) Biochimie , vol.76 , pp. 1019-1029
    • McGovern, V.1    Higgins, N.P.2    Chiz, R.S.3    Jaworski, A.4
  • 20
    • 0028907619 scopus 로고
    • Gratuitous overexpression of genes in Escherichia coli leads to growth inhibition and ribosome destruction
    • Dong H, Nilsson L, Kurland CG (1995) Gratuitous overexpression of genes in Escherichia coli leads to growth inhibition and ribosome destruction. J Bacteriol 177: 1497-1504.
    • (1995) J Bacteriol , vol.177 , pp. 1497-1504
    • Dong, H.1    Nilsson, L.2    Kurland, C.G.3
  • 22
    • 0142172058 scopus 로고    scopus 로고
    • Escherichia coli spotted double-strand DNA microarrays: RNA extraction, labeling, hybridization, quality control, and data management
    • Khodursky AB, Bernstein JA, Peter BJ, Rhodius V, Wendisch VF, et al. (2003) Escherichia coli spotted double-strand DNA microarrays: RNA extraction, labeling, hybridization, quality control, and data management. Methods Mol Biol 224: 61-78.
    • (2003) Methods Mol Biol , vol.224 , pp. 61-78
    • Khodursky, A.B.1    Bernstein, J.A.2    Peter, B.J.3    Rhodius, V.4    Wendisch, V.F.5
  • 23
    • 0034927555 scopus 로고    scopus 로고
    • Analysis of variance for gene expression microarray data
    • Kerr MK, Martin M, Churchill GA (2000) Analysis of variance for gene expression microarray data. J Comput Biol 7: 819-837.
    • (2000) J Comput Biol , vol.7 , pp. 819-837
    • Kerr, M.K.1    Martin, M.2    Churchill, G.A.3
  • 25
    • 82155203018 scopus 로고    scopus 로고
    • The association of DNA damage response and nucleotide level modulation with the antibacterial mechanism of the anti-folate drug trimethoprim
    • Sangurdekar DP, Zhang Z, Khodursky AB (2011) The association of DNA damage response and nucleotide level modulation with the antibacterial mechanism of the anti-folate drug trimethoprim. BMC Genomics 12: 583.
    • (2011) BMC Genomics , vol.12 , pp. 583
    • Sangurdekar, D.P.1    Zhang, Z.2    Khodursky, A.B.3
  • 27
    • 31144454629 scopus 로고    scopus 로고
    • Conserved and variable functions of the sigmaE stress response in related genomes
    • Rhodius VA, Suh WC, Nonaka G, West J, Gross CA (2006) Conserved and variable functions of the sigmaE stress response in related genomes. PLoS biology 4: e2.
    • (2006) PLoS Biology , vol.4
    • Rhodius, V.A.1    Suh, W.C.2    Nonaka, G.3    West, J.4    Gross, C.A.5
  • 28
    • 33745618956 scopus 로고    scopus 로고
    • 32, reveals a multifaceted cellular response to heat stress
    • DOI 10.1101/gad.1428206
    • Nonaka G, Blankschien M, Herman C, Gross CA, Rhodius VA (2006) Regulon and promoter analysis of the E. coli heat-shock factor, sigma32, reveals a multifaceted cellular response to heat stress. Genes & development 20: 1776-1789. (Pubitemid 43992886)
    • (2006) Genes and Development , vol.20 , Issue.13 , pp. 1776-1789
    • Nonaka, G.1    Blankschien, M.2    Herman, C.3    Gross, C.A.4    Rhodius, V.A.5
  • 29
    • 11344293422 scopus 로고    scopus 로고
    • Spatial patterns of transcriptional activity in the chromosome of Escherichia coli
    • Jeong KS, Ahn J, Khodursky AB (2004) Spatial patterns of transcriptional activity in the chromosome of Escherichia coli. Genome Biol 5: R86.
    • (2004) Genome Biol , vol.5
    • Jeong, K.S.1    Ahn, J.2    Khodursky, A.B.3
  • 30
    • 33749419280 scopus 로고    scopus 로고
    • Analysis of pleiotropic transcriptional profiles: A case study of DNA gyrase inhibition
    • Jeong KS, Xie Y, Hiasa H, Khodursky AB (2006) Analysis of pleiotropic transcriptional profiles: a case study of DNA gyrase inhibition. PLoS Genet 2: e152.
    • (2006) PLoS Genet , vol.2
    • Jeong, K.S.1    Xie, Y.2    Hiasa, H.3    Khodursky, A.B.4
  • 31
    • 0032716841 scopus 로고    scopus 로고
    • Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid
    • Ali Azam T, Iwata A, Nishimura A, Ueda S, Ishihama A (1999) Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid. J Bacteriol 181: 6361-6370. (Pubitemid 29512946)
    • (1999) Journal of Bacteriology , vol.181 , Issue.20 , pp. 6361-6370
    • Azam, T.A.1    Iwata, A.2    Nishimura, A.3    Ueda, S.4    Ishihama, A.5
  • 32
    • 0026620949 scopus 로고
    • Dramatic changes in Fis levels upon nutrient upshift in Escherichia coli
    • Ball CA, Osuna R, Ferguson KC, Johnson RC (1992) Dramatic changes in Fis levels upon nutrient upshift in Escherichia coli. J Bacteriol 174: 8043-8056. (Pubitemid 23002939)
    • (1992) Journal of Bacteriology , vol.174 , Issue.24 , pp. 8043-8056
    • Ball, C.A.1    Osuna, R.2    Ferguson, K.C.3    Johnson, R.C.4
  • 34
    • 0023186464 scopus 로고
    • Induction of proteins in response to low temperature in Eschericia coli
    • Jones PG, VanBogelen RA, Neidhardt FC (1987) Induction of proteins in response to low temperature in Escherichia coli. J Bacteriol 169: 2092-2095. (Pubitemid 17081772)
    • (1987) Journal of Bacteriology , vol.169 , Issue.5 , pp. 2092-2095
    • Jones, P.G.1    VanBogelen, R.A.2    Neidhardt, F.C.3
  • 35
    • 0024801633 scopus 로고
    • Characterization of the relA1 mutation and a comparison of relA1 with new relA null alleles in Escherichia coli
    • Metzger S, Schreiber G, Aizenman E, Cashel M, Glaser G (1989) Characterization of the relA1 mutation and a comparison of relA1 with new relA null alleles in Escherichia coli. J Biol Chem 264: 21146-21152. (Pubitemid 20017931)
    • (1989) Journal of Biological Chemistry , vol.264 , Issue.35 , pp. 21146-21152
    • Metzger, S.1    Schreiber, G.2    Aizenman, E.3    Cashel, M.4    Glaser, G.5
  • 36
    • 0000880652 scopus 로고
    • Isolation and Characterization of Recombination-Deficient Mutants of Escherichia Coli K12
    • Clark AJ, Margulies AD (1965) Isolation and Characterization of Recombination-Deficient Mutants of Escherichia Coli K12. Proc Natl Acad Sci U S A 53: 451-459.
    • (1965) Proc Natl Acad Sci U S A , vol.53 , pp. 451-459
    • Clark, A.J.1    Margulies, A.D.2
  • 37
    • 0021332983 scopus 로고
    • Functional domains of Escherichia coli recA protein deduced from the mutational sites in the gene
    • DOI 10.1007/BF00330682
    • Kawashima H, Horii T, Ogawa T, Ogawa H (1984) Functional domains of Escherichia coli recA protein deduced from the mutational sites in the gene. Mol Gen Genet 193: 288-292. (Pubitemid 14153305)
    • (1984) Molecular and General Genetics , vol.193 , Issue.2 , pp. 288-292
    • Kawashima, H.1    Horii, T.2    Ogawa, T.3    Ogawa, H.4
  • 39
    • 33745022557 scopus 로고    scopus 로고
    • A classification based framework for quantitative description of large-scale microarray data
    • Sangurdekar DP, Srienc F, Khodursky AB (2006) A classification based framework for quantitative description of large-scale microarray data. Genome Biol 7: R32.
    • (2006) Genome Biol , vol.7
    • Sangurdekar, D.P.1    Srienc, F.2    Khodursky, A.B.3
  • 42
    • 17444364828 scopus 로고    scopus 로고
    • Amino acid content of recombinant proteins influences the metabolic burden response
    • DOI 10.1002/bit.20436
    • Bonomo J, Gill RT (2005) Amino acid content of recombinant proteins influences the metabolic burden response. Biotechnology and bioengineering 90: 116-126. (Pubitemid 40547045)
    • (2005) Biotechnology and Bioengineering , vol.90 , Issue.1 , pp. 116-126
    • Bonomo, J.1    Gill, R.T.2
  • 43
    • 0033672578 scopus 로고    scopus 로고
    • A comparative study of global stress gene regulation in response to overexpression of recombinant proteins in Escherichia coli
    • Gill RT, Valdes JJ, Bentley WE (2000) A comparative study of global stress gene regulation in response to overexpression of recombinant proteins in Escherichia coli. Metabolic engineering 2: 178-189.
    • (2000) Metabolic Engineering , vol.2 , pp. 178-189
    • Gill, R.T.1    Valdes, J.J.2    Bentley, W.E.3
  • 44
    • 0033662220 scopus 로고    scopus 로고
    • DNA microarray detection of metabolic responses to protein overproduction in Escherichia coli
    • Oh MK, Liao JC (2000) DNA microarray detection of metabolic responses to protein overproduction in Escherichia coli. Metab Eng 2: 201-209.
    • (2000) Metab Eng , vol.2 , pp. 201-209
    • Oh, M.K.1    Liao, J.C.2
  • 46
    • 33846542681 scopus 로고    scopus 로고
    • Nutrient starvation promotes condensin loading to maintain rDNA stability
    • DOI 10.1038/sj.emboj.7601488, PII 7601488
    • Tsang CK, Li H, Zheng XS (2007) Nutrient starvation promotes condensin loading to maintain rDNA stability. Embo J 26: 448-458. (Pubitemid 46160945)
    • (2007) EMBO Journal , vol.26 , Issue.2 , pp. 448-458
    • Tsang, C.K.1    Li, H.2    Zheng, X.F.S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.