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Volumn 8, Issue 12, 2013, Pages

Nested sampling for Bayesian model comparison in the context of Salmonella disease dynamics

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL EXPERIMENT; ANIMAL MODEL; ARTICLE; BAYESIAN LEARNING; CONTROLLED STUDY; DISEASE COURSE; LIVER CELL; MATHEMATICAL MODEL; MOUSE; NONHUMAN; PREDICTION; TYPHOID FEVER; ALGORITHM; ANIMAL; ANIMAL SALMONELLOSIS; BACTERIAL COUNT; BAYES THEOREM; BIOLOGICAL MODEL; COMPARATIVE STUDY; CYTOLOGY; MICROBIOLOGY; PATHOGENICITY; PHYSIOLOGY; PROBABILITY; SALMONELLA ENTERICA; STATISTICS; VIRULENCE;

EID: 84893374049     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0082317     Document Type: Article
Times cited : (11)

References (37)
  • 2
    • 0016355478 scopus 로고
    • A new look at statistical model identification
    • Akaike H (1974) A new look at statistical model identification. IEEE Transactions on Automatic Control AU-19: 195-223.
    • (1974) IEEE Transactions on Automatic Control , vol.AU-19 , pp. 195-223
    • Akaike, H.1
  • 4
    • 0000120766 scopus 로고
    • Estimating the dimension of a model
    • Schwarz G (1978) Estimating the dimension of a model. Annals of Statistics 6: 461-464.
    • (1978) Annals of Statistics , vol.6 , pp. 461-464
    • Schwarz, G.1
  • 5
    • 0021518209 scopus 로고
    • STOCHASTIC RELAXATION, GIBBS DISTRIBUTIONS, AND THE BAYESIAN RESTORATION OF IMAGES.
    • Geman S, Geman D (1984) Stochastic relaxation, Gibbs distributions, and the Bayesian restoration of images. IEEE Transactions on Pattern Analysis and Machine Intelligence 6: 721-741. (Pubitemid 15453722)
    • (1984) IEEE Transactions on Pattern Analysis and Machine Intelligence , vol.PAMI-6 , Issue.6 , pp. 721-741
    • Geman, S.1    Geman, D.2
  • 7
    • 35148901361 scopus 로고    scopus 로고
    • Nested sampling for general Bayesian computation
    • Skilling J (2006) Nested sampling for general Bayesian computation. Bayesian Analysis 1(4): 833-859.
    • (2006) Bayesian Analysis , vol.1 , Issue.4 , pp. 833-859
    • Skilling, J.1
  • 8
    • 33644772615 scopus 로고    scopus 로고
    • A nested sampling algorithm for cosmological model selection
    • DOI 10.1086/501068
    • Mukherjee P, Parkinson D, Liddle A (2006) A nested sampling algorithm for cosmological model selection. Astrophysical Journal Letters 638: L51-L54. (Pubitemid 43342421)
    • (2006) Astrophysical Journal , vol.638 , Issue.2 II
    • Mukherjee, P.1    Parkinson, D.2    Liddle, A.R.3
  • 10
    • 84869140351 scopus 로고    scopus 로고
    • Nested sampling applied in Bayesian room-acoustics decay analysis
    • Jasa T, Xiang N (2012) Nested sampling applied in Bayesian room-acoustics decay analysis. Journal of the Acoustical Society of America 132: 3251-3262.
    • (2012) Journal of the Acoustical Society of America , vol.132 , pp. 3251-3262
    • Jasa, T.1    Xiang, N.2
  • 11
    • 0036847164 scopus 로고    scopus 로고
    • A tutorial introduction to Bayesian inference for stochastic epidemic models using Markov chain Monte Carlo methods
    • O'Neill P (2002) A tutorial introduction to Bayesian inference for stochastic epidemic models using Markov chain Monte Carlo methods. Mathematical Biosciences 180: 103-114.
    • (2002) Mathematical Biosciences , vol.180 , pp. 103-114
    • O'Neill, P.1
  • 12
    • 79955767867 scopus 로고    scopus 로고
    • Relationship between clinical signs and transmission of an infectious disease and the implications for control
    • Charleston B, Bankowski B, Gubbins S, Chase-Topping M, Schley D, et al. (2011) Relationship between clinical signs and transmission of an infectious disease and the implications for control. Science 332: 726-729.
    • (2011) Science , vol.332 , pp. 726-729
    • Charleston, B.1    Bankowski, B.2    Gubbins, S.3    Chase-Topping, M.4    Schley, D.5
  • 13
    • 78049425660 scopus 로고    scopus 로고
    • Quantitative analysis of immune response and edrythropoiesis during rodent malarial infection
    • Miller M, Raberg L, Read A, Savill N (2010) Quantitative analysis of immune response and edrythropoiesis during rodent malarial infection. PLoS Computational Biology 6: e1000946.
    • (2010) PLoS Computational Biology , vol.6
    • Miller, M.1    Raberg, L.2    Read, A.3    Savill, N.4
  • 15
    • 11344287018 scopus 로고    scopus 로고
    • Bacterial infections - A major cause of death among children in Africa
    • DOI 10.1056/NEJMe048306
    • Mulholland E, Adegbola R (2005) Bacterial infections - a major cause of death among children in Africa. New England Journal of Medicine 352: 75-77. (Pubitemid 40075685)
    • (2005) New England Journal of Medicine , vol.352 , Issue.1 , pp. 75-77
    • Mulholland, E.K.1    Adegbola, R.A.2
  • 16
    • 73649135423 scopus 로고    scopus 로고
    • Global trends in typhoid and paratyphoid fever
    • Crump J, Mintz E (2010) Global trends in typhoid and paratyphoid fever. Clinical Infectious Diseases 50: 241-246.
    • (2010) Clinical Infectious Diseases , vol.50 , pp. 241-246
    • Crump, J.1    Mintz, E.2
  • 17
    • 57649232149 scopus 로고    scopus 로고
    • A dynamic view of the spread and intracellular distribution of Salmonella enterica
    • Mastroeni P, Grant A, Restif O, Maskell D (2009) A dynamic view of the spread and intracellular distribution of Salmonella enterica. Nature Reviews Microbiology 7: 73-80.
    • (2009) Nature Reviews Microbiology , vol.7 , pp. 73-80
    • Mastroeni, P.1    Grant, A.2    Restif, O.3    Maskell, D.4
  • 18
    • 79956134172 scopus 로고    scopus 로고
    • Spread of Salmonella enterica in the body during systemic infection: Unravelling host and pathogen determinants
    • Mastroeni P, Grant A (2011) Spread of Salmonella enterica in the body during systemic infection: unravelling host and pathogen determinants. Expert Reviews in Molecular Medicine 13: e12.
    • (2011) Expert Reviews in Molecular Medicine , vol.13
    • Mastroeni, P.1    Grant, A.2
  • 19
    • 0030807629 scopus 로고    scopus 로고
    • Murine salmonellosis studied by confocal microscopy: Salmonella typhimurium resides intracellularly inside macrophages and exerts a cytotoxic effect on phagocytes in vivo
    • DOI 10.1084/jem.186.4.569
    • Richter-Dahlfors A, Buchan A, Finlay B (1997) Murine salmonellosis studied by confocal microscopy: Salmonella typhimurium resides intracellularly inside macrophages and exerts a cytotoxic effect on phagocytes in vivo. Journal of Experimental Medicine 186: 569-580. (Pubitemid 27360801)
    • (1997) Journal of Experimental Medicine , vol.186 , Issue.4 , pp. 569-580
    • Richter-Dahlfors, A.1    Buchan, A.M.J.2    Finlay, B.B.3
  • 20
    • 72449174257 scopus 로고    scopus 로고
    • Bacterial growth rate and host factors as determinants of intracellular bacterial distributions in systemic Salmonella enterica infections
    • Grant A, Foster G, McKinley T, Brown S, Clare S, et al. (2009) Bacterial growth rate and host factors as determinants of intracellular bacterial distributions in systemic Salmonella enterica infections. Infection and Immunity 77: 5608-5611.
    • (2009) Infection and Immunity , vol.77 , pp. 5608-5611
    • Grant, A.1    Foster, G.2    McKinley, T.3    Brown, S.4    Clare, S.5
  • 21
    • 84872026981 scopus 로고    scopus 로고
    • Attenuated Salmonella Typhimurium lacking the pathogenicity island-2 type 3 secretion system grow to high bacterial numbers inside phagocytes in mice
    • Grant A, Morgan F, McKinley T, Foster G, Maskell D, et al. (2012) Attenuated Salmonella Typhimurium lacking the pathogenicity island-2 type 3 secretion system grow to high bacterial numbers inside phagocytes in mice. PLOS Pathogens 8: e1003070.
    • (2012) PLOS Pathogens , vol.8
    • Grant, A.1    Morgan, F.2    McKinley, T.3    Foster, G.4    Maskell, D.5
  • 22
    • 49249139422 scopus 로고    scopus 로고
    • Caspase-3-dependent phagocyte death during systemic Salmonella enterica serovar Typhimurium infection of mice
    • Grant A, Sheppard M, Deardon R, Brown S, Foster G, et al. (2008) Caspase-3-dependent phagocyte death during systemic Salmonella enterica serovar Typhimurium infection of mice. Immunology 125: 28-37.
    • (2008) Immunology , vol.125 , pp. 28-37
    • Grant, A.1    Sheppard, M.2    Deardon, R.3    Brown, S.4    Foster, G.5
  • 23
    • 0042328144 scopus 로고    scopus 로고
    • Dynamics of bacterial growth and distribution within the liver during Salmonella infection
    • DOI 10.1046/j.1462-5822.2003.00296.x
    • SheppardM, Webb C, Heath F, Mallows V, Emilianus R, et al. (2003) Dynamics of bacterial growth and distribution within the liver during Salmonella infection. Cellular Microbiology 5: 593-600. (Pubitemid 37080670)
    • (2003) Cellular Microbiology , vol.5 , Issue.9 , pp. 593-600
    • Sheppard, M.1    Webb, C.2    Heath, F.3    Mallows, V.4    Emilianus, R.5    Maskell, D.6    Mastroeni, P.7
  • 24
    • 33751067174 scopus 로고    scopus 로고
    • Intracellular demography and the dynamics of Salmonella enterica infections
    • Brown S, Cornell S, Sheppard M, Grant A, Maskell D, et al. (2006) Intracellular demography and the dynamics of Salmonella enterica infections. PLoS Biology 4: e349.
    • (2006) PLoS Biology , vol.4
    • Brown, S.1    Cornell, S.2    Sheppard, M.3    Grant, A.4    Maskell, D.5
  • 28
    • 38849196929 scopus 로고    scopus 로고
    • Multimodal nested sampling: An efficient and robust alternative to MCMC methods for astronomical data analysis
    • Feroz F, Hobson M (2008) Multimodal nested sampling: an efficient and robust alternative to MCMC methods for astronomical data analysis. Monthly Notices of the Royal Astronomical Society 2: 449-463.
    • (2008) Monthly Notices of the Royal Astronomical Society , vol.2 , pp. 449-463
    • Feroz, F.1    Hobson, M.2
  • 29
    • 77955861158 scopus 로고    scopus 로고
    • Properties of nested sampling
    • Chopin N, Robert C (2010) Properties of nested sampling. Biometrika 97: 741-755.
    • (2010) Biometrika , vol.97 , pp. 741-755
    • Chopin, N.1    Robert, C.2
  • 30
    • 33751067174 scopus 로고    scopus 로고
    • Protocol S1: Details of model constructions and statistical analyses for "Intracellular demography and the dynamics of Salmonella enterica infections"
    • Brown S, Cornell S, Sheppard M, Grant A, Maskell D, et al. (2006) Protocol S1: Details of model constructions and statistical analyses for "Intracellular demography and the dynamics of Salmonella enterica infections". PLoS Biology 4: e349.
    • (2006) PLoS Biology , vol.4
    • Brown, S.1    Cornell, S.2    Sheppard, M.3    Grant, A.4    Maskell, D.5
  • 33
    • 0042742904 scopus 로고
    • Posterior predictive p-values
    • Meng XL (1994) Posterior predictive p-values. The Annals of Statistics 22: 1142-1160.
    • (1994) The Annals of Statistics , vol.22 , pp. 1142-1160
    • Meng, X.L.1
  • 37
    • 70349215183 scopus 로고    scopus 로고
    • MultiNest: An efficient and robust Bayesian inference tool for cosmology and particle physics
    • Feroz F, Hobson M, Bridges M (2009) MultiNest: an efficient and robust Bayesian inference tool for cosmology and particle physics. Monthly Notices of the Royal Astronomical Society 398: 1601-1614.
    • (2009) Monthly Notices of the Royal Astronomical Society , vol.398 , pp. 1601-1614
    • Feroz, F.1    Hobson, M.2    Bridges, M.3


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