메뉴 건너뛰기




Volumn 16, Issue 2, 2014, Pages 265-273

Brain tumor cell line authentication, an efficient alternative to capillary electrophoresis by using a microfluidics-based system

Author keywords

brain tumor cell authentication; DNA fingerprinting; microfluidics; STR profiling

Indexed keywords

DNA;

EID: 84893079204     PISSN: 15228517     EISSN: 15235866     Source Type: Journal    
DOI: 10.1093/neuonc/not202     Document Type: Article
Times cited : (20)

References (31)
  • 1
    • 77953419918 scopus 로고    scopus 로고
    • Check your cultures! A list of cross-contaminated or misidentified cell lines
    • Capes-Davis A, Theodosopoulos G, Atkin I, et al. Check your cultures! A list of cross-contaminated or misidentified cell lines. Int J Cancer. 2010; 127:1-8.
    • Int J Cancer , vol.2010 , Issue.127 , pp. 1-8
    • Capes-Davis, A.1    Theodosopoulos, G.2    Atkin, I.3
  • 2
    • 78649323066 scopus 로고    scopus 로고
    • Recommendation of short tandem repeat profiling for authenticating human cell lines, stem cells, and tissues
    • Barallon R, Bauer SR, Butler J, et al. Recommendation of short tandem repeat profiling for authenticating human cell lines, stem cells, and tissues. In vitro Cell Dev Biol Anim. 2010;46:727-732.
    • Vitro Cell Dev Biol Anim , vol.2010 , Issue.46 , pp. 727-732
    • Barallon, R.1    Bauer, S.R.2    Butler, J.3
  • 3
    • 78751566518 scopus 로고    scopus 로고
    • Short tandem repeat profiling: Part of an overall strategy for reducing the frequency of cell misidentification
    • Nims RW, Sykes G, Cottrill K, Ikonomi P, Elmore E. Short tandem repeat profiling: part of an overall strategy for reducing the frequency of cell misidentification. In vitro Cell Dev Biol Anim. 2010;46:811-819.
    • (2010) Vitro Cell Dev Biol Anim , vol.46 , pp. 811-819
    • Nims, R.W.1    Sykes, G.2    Cottrill, K.3    Ikonomi, P.4    Elmore, E.5
  • 4
    • 33644904034 scopus 로고    scopus 로고
    • Genetics and genomics of core short tandem repeat loci used in human identity testing
    • Butler JM. Genetics and genomics of core short tandem repeat loci used in human identity testing. J Forensic Sci. 2006;51:253-265.
    • (2006) J Forensic Sci , vol.51 , pp. 253-265
    • Butler, J.M.1
  • 5
    • 0034934077 scopus 로고    scopus 로고
    • Short tandem repeat profiling provides an international reference standard for human cell lines
    • Masters JR, Thomson JA, Daly-Burns B, et al. Short tandem repeat profiling provides an international reference standard for human cell lines. Proc Natl Acad Sci U S A. 2001;98:8012-8017.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 8012-8017
    • Masters, J.R.1    Thomson, J.A.2    Daly-Burns, B.3
  • 6
    • 0033766119 scopus 로고    scopus 로고
    • Evaluation of DNA fragment sizing and quantification by the Agilent 2100 Bioanalyzer
    • Panaro NJ, Yuen PK, Sakazume T, Fortina P, Kricka LJ, Wilding P. Evaluation of DNA fragment sizing and quantification by the Agilent 2100 Bioanalyzer. Clin Chem. 2000;46:1851-1853.
    • (2000) Clin Chem , vol.46 , pp. 1851-1853
    • Panaro, N.J.1    Yuen, P.K.2    Sakazume, T.3    Fortina, P.4    Kricka, L.J.5    Wilding, P.6
  • 7
    • 33646095760 scopus 로고    scopus 로고
    • Preanalytical aspects of quantitative TaqMan real-time RT-PCR: Applications for TF and VEGF mRNA quantification
    • Isaksson HS, Nilsson TK. Preanalytical aspects of quantitative TaqMan real-time RT-PCR: applications for TF and VEGF mRNA quantification. Clin Biochem. 2006;39:373-377.
    • (2006) Clin Biochem , vol.39 , pp. 373-377
    • Isaksson, H.S.1    Nilsson, T.K.2
  • 8
    • 0347079573 scopus 로고    scopus 로고
    • Use of Lab-ona- Chip technology for protein sizing and quantitation
    • Kuschel M, Neumann T, Barthmaier P, Kratzmeier M. Use of Lab-ona- Chip technology for protein sizing and quantitation. J Biomol Tech. 2002;13:172-178.
    • (2002) J Biomol Tech , vol.13 , pp. 172-178
    • Kuschel, M.1    Neumann, T.2    Barthmaier, P.3    Kratzmeier, M.4
  • 9
    • 23844527590 scopus 로고    scopus 로고
    • Analysis of mitochondrial membrane potential in the cells by microchip flow cytometry
    • Kataoka M, Fukura Y, Shinohara Y, Baba Y. Analysis of mitochondrial membrane potential in the cells by microchip flow cytometry. Electrophoresis. 2005;26:3025-3031.
    • (2005) Electrophoresis , vol.26 , pp. 3025-3031
    • Kataoka, M.1    Fukura, Y.2    Shinohara, Y.3    Baba, Y.4
  • 10
    • 1842474964 scopus 로고    scopus 로고
    • Evaluating RNA status for RT-PCR in extracts of postmortem human brain tissue
    • Miller CL, Diglisic S, Leister F, Webster M, Yolken RH. Evaluating RNA status for RT-PCR in extracts of postmortem human brain tissue. Biotechniques. 2004;36:628-633.
    • (2004) Biotechniques , vol.36 , pp. 628-633
    • Miller, C.L.1    Diglisic, S.2    Leister, F.3    Webster, M.4    Yolken, R.H.5
  • 11
    • 25444435691 scopus 로고    scopus 로고
    • A qualitative assessment of direct-labeled cDNA products prior to microarray analysis
    • Grissom SF, Lobenhofer EK, Tucker CJ. A qualitative assessment of direct-labeled cDNA products prior to microarray analysis. BMC Genomics. 2005;6:36.
    • (2005) BMC Genomics , vol.6 , pp. 36
    • Grissom, S.F.1    Lobenhofer, E.K.2    Tucker, C.J.3
  • 13
    • 77954960598 scopus 로고    scopus 로고
    • The development of mini pentameric STR loci for rapid analysis of forensic DNA samples on a microfluidic system
    • Aboud MJ, Gassmann M, McCord BR. The development of mini pentameric STR loci for rapid analysis of forensic DNA samples on a microfluidic system. Electrophoresis. 2010;31:2672-2679.
    • Electrophoresis , vol.2010 , Issue.31 , pp. 2672-2679
    • Aboud, M.J.1    Gassmann, M.2    McCord, B.R.3
  • 14
    • 80355135457 scopus 로고    scopus 로고
    • DNA-based fish species identification protocol
    • Formosa R, Ravi H, Happe S, et al. DNA-based fish species identification protocol. J Vis Exp. 2010;38:e1871.
    • J Vis Exp , vol.2010 , Issue.38
    • Formosa, R.1    Ravi, H.2    Happe, S.3
  • 15
    • 62349120541 scopus 로고    scopus 로고
    • StemEliteTM ID System, Promega Corporation Publication Number TM307
    • StemEliteTM ID System, Promega Corporation, Technical Manual, Publication Number TM307, 2008.
    • (2008) Technical Manual
  • 16
    • 66449108540 scopus 로고    scopus 로고
    • DNA fingerprinting of the NCI-60 cell line panel
    • Lorenzi PL, Reinhold WC, Varma S, et al. DNA fingerprinting of the NCI-60 cell line panel. Mol Cancer Ther. 2009;8:713-724.
    • (2009) Mol Cancer Ther , vol.8 , pp. 713-724
    • Lorenzi, P.L.1    Reinhold, W.C.2    Varma, S.3
  • 17
    • 84893069154 scopus 로고    scopus 로고
    • Agilent DNA 1000 Kit, Agilent Technologies, Inc. Manual, Publication Number G2938-90014, edition 08/ Accessed November 28, 2013
    • Agilent DNA 1000 Kit, Agilent Technologies, Inc. Manual, Publication Number G2938-90014, edition 08/2006. Available at http://www. chem.agilent.com/library/usermanuals/Public/G2938-90014-KitGuide DNA1000Assay-ebook.pdf. Accessed November 28, 2013.
    • (2006)
  • 18
    • 84893130409 scopus 로고    scopus 로고
    • Eurofins MWG Operson, Service Overview Flyer, Version 1 06/2011
    • Fragment Length Analysis, Eurofins MWG Operson, Service Overview Flyer, Version 1 06/2011.
    • Fragment Length Analysis
  • 19
    • 84876075408 scopus 로고    scopus 로고
    • NCI-H1299 product information Accessed November 28, 2013
    • NCI-H1299 product information. American Type Culture Collection. Available at http://www.atcc.org/Products/All/CRL-5803.aspx?Geo- country=us#A7931A04156C4C7FA40828AEF707302F. Accessed November 28, 2013.
    • American Type Culture Collection
  • 20
    • 84893076881 scopus 로고    scopus 로고
    • Accessed November 28, 2013
    • Misidentified Cell Lines, American Type Culture Collection. Available at http://www.atcc.org/Products/Cells-and-Microorganisms/Cell-Lines/ Misidentified-Cell-Lines.aspx?Geo-country=us. Accessed November 28, 2013.
    • Misidentified Cell Lines. American Type Culture Collection
  • 21
    • 84893081146 scopus 로고    scopus 로고
    • Accessed November 28, 2013
    • U-373MGdatasheet, the Health Protection AgencyCulture Collections. Available at http://www.phe-culturecollections.org.uk/products/ celllines/generalcell/detail.jsp?RefId=08061901andcollection=ecacc-gc. Accessed November 28, 2013.
    • U-373MGdatasheet, the Health Protection AgencyCulture Collections
  • 22
    • 84893136038 scopus 로고    scopus 로고
    • SNB-19 datasheet, the DSMZ-German Collection of Microorganisms and Cell Cultures Accessed November 28, 2013
    • SNB-19 datasheet, the DSMZ-German Collection of Microorganisms and Cell Cultures. Available at http://www.dsmz.de/catalogues/ details/culture/ACC-325. html?Tx-dsmzresources-pi5%5BreturnPid% 5D=192. Accessed November 28, 2013.
  • 23
    • 33845200848 scopus 로고    scopus 로고
    • Mutation analysis of 24 known cancer genes in the NCI-60 cell line set
    • Ikediobi ON, Davies H, Bignell G, et al. Mutation analysis of 24 known cancer genes in the NCI-60 cell line set. Mol Cancer Ther. 2006;5: 2606-2612.
    • (2006) Mol Cancer Ther , vol.5 , pp. 2606-2612
    • Ikediobi, O.N.1    Davies, H.2    Bignell, G.3
  • 24
    • 0347951257 scopus 로고    scopus 로고
    • Karyotypic complexity of the NCI-60 drug-screening panel
    • Roschke AV, Tonon G, Gehlhaus KS, et al. Karyotypic complexity of the NCI-60 drug-screening panel. Cancer Res. 2003;63:8634-8647.
    • (2003) Cancer Res , vol.63 , pp. 8634-8647
    • Roschke, A.V.1    Tonon, G.2    Gehlhaus, K.S.3
  • 25
    • 84870541671 scopus 로고    scopus 로고
    • Quality control of next-generation sequencing library through an integrative digital microfluidic platform
    • Thaitrong N, Kim H, Renzi RF, Bartsch MS, Meagher RJ, Patel KD. Quality control of next-generation sequencing library through an integrative digital microfluidic platform. Electrophoresis. 2012;33: 3506-3513.
    • Electrophoresis , vol.2012 , Issue.33 , pp. 3506-3513
    • Thaitrong, N.1    Kim, H.2    Renzi, R.F.3    Bartsch, M.S.4    Meagher, R.J.5    Patel, K.D.6
  • 27
    • 34547685931 scopus 로고    scopus 로고
    • The effect of column purification on cDNA indirect labelling for microarrays
    • Molas ML, Kiss JZ. The effect of column purification on cDNA indirect labelling for microarrays. Plant Methods. 2007;3:9.
    • (2007) Plant Methods , vol.3 , pp. 9
    • Molas, M.L.1    Kiss, J.Z.2
  • 28
    • 84863503455 scopus 로고    scopus 로고
    • Microarray-based gene expression analysis of an animal model for closed head injury
    • Colak T, Cine N, Bamac B, et al. Microarray-based gene expression analysis of an animal model for closed head injury. Injury. 2012;43: 1264-1270.
    • (2012) Injury , vol.43 , pp. 1264-1270
    • Colak, T.1    Cine, N.2    Bamac, B.3
  • 29
    • 77955389409 scopus 로고    scopus 로고
    • Spontaneous malignant transformation of human mesenchymal stem cells reflects crosscontamination: Putting the research field on track-letter
    • Torsvik A, Rosland GV, Svendsen A, et al. Spontaneous malignant transformation of human mesenchymal stem cells reflects crosscontamination: putting the research field on track-letter. Cancer Res. 2010;70:6393-6396.
    • (2010) Cancer Res , vol.70 , pp. 6393-6396
    • Torsvik, A.1    Rosland, G.V.2    Svendsen, A.3
  • 30
    • 77952950455 scopus 로고    scopus 로고
    • Cell line misidentification: The beginning of the end
    • American Type Culture Collection Standards Development Organization, ASN-0002 Workshop
    • American Type Culture Collection Standards Development Organization, ASN-0002 Workshop. Cell line misidentification: the beginning of the end. Nat Rev Cancer. 2010;10:441-448.
    • (2010) Nat Rev Cancer , vol.10 , pp. 441-448
  • 31
    • 84862203789 scopus 로고    scopus 로고
    • DNA fingerprinting of glioma cell lines and considerations on similarity measurements
    • Bady P, Diserens AC, Castella V, et al. DNA fingerprinting of glioma cell lines and considerations on similarity measurements. Neuro Oncol. 2012;14:701-711.
    • Neuro Oncol , vol.2012 , Issue.14 , pp. 701-711
    • Bady, P.1    Diserens, A.C.2    Castella, V.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.