Microarray-based gene expression analysis of an animal model for closed head injury

Injury

Volumn 43, Issue 8, 2012, Pages 1264-1270

  Colak, T ^a   Cine, N ^b   Bamac, B ^a   Kurtas, O ^b   Ozbek, A ^a   Bicer, U ^b   Sunnetci, D ^b   Savli, H ^b  

^a KOCAELI UNIVERSITY   (Turkey)

^b Department of Medical Genetics ^*  (Turkey)

Author keywords

Craniocerebral trauma; Microarray; Rats

Indexed keywords

BRAIN DERIVED NEUROTROPHIC FACTOR; CD47 ANTIGEN; CURCUMIN; GELATINASE B;

ANALYZER; ANIMAL CELL; ANIMAL EXPERIMENT; ANIMAL MODEL; ANIMAL TISSUE; BLOOD SAMPLING; BRAIN TISSUE; CLINICAL EVALUATION; CONTROLLED STUDY; GENE EXPRESSION; GENE INTERACTION; GENETIC SUSCEPTIBILITY; MALE; MICROARRAY ANALYSIS; NONHUMAN; PRIORITY JOURNAL; RAT; REVIEW; RNA ISOLATION; SIGNAL NOISE RATIO; STATISTICAL ANALYSIS; TRAUMATIC BRAIN INJURY; WISTAR ALBINO GLAXO RAT;

EID: 84863503455     PISSN: 00201383     EISSN: 18790267     Source Type: Journal    
DOI: 10.1016/j.injury.2012.01.021     Document Type: Article

References (46)

1. G. Akdemir Trauma scoring and glasgow coma scale Turkiye Klinikleri J Neurosurg 1 1 2008 6 11
2. Z.M. Bekman Head trauma Turkiye Klinikleri J Int Med Sci 3 5 2007 35 43
3. J.R. De Kruijk, A. Twijnstra, and P. Leffers Diagnostic criteria and differential diagnosis of mild traumatic brain injury Brain Inj 15 2 2001 99 106
4. T. Colak, C. Duman, B. Bamac, A. Aydin, A. Ozbek, and K. Yildiz Ischemia modified albumin levels following mild closed head trauma in the rat Turkiye Klinikleri J Med Sci 30 4 2010 1171 1176
5. M.P. Alexander Mild traumatic brain injury: pathophysiology, natural history, and clinical management Neurology 45 7 1995 1253 1260
6. W.R. Murshid Management of minor head injuries: admission criteria, radiological evaluation and treatment of complications Acta Neurochir (Wien) 140 1 1998 56 64
7. B. Voller, E. Auff, P. Schnider, and F. Aichner To do or not to do? Magnetic resonance imaging in mild traumatic brain injury Brain Inj 15 2 2001 107 115
8. T.A. Gennarelli, and D.I. Graham Neuropathology of the head injuries Semin Clin Neuropsychiatry 3 3 1998 160 175
9. S. Nabika, K. Kiya, H. Satoh, T. Mizoue, J. Oshita, and H. Kondo Ischemia of the internal capsule due to mild head injury in a child Pediatr Neurosurg 43 4 2007 312 315
10. L.W. Jenkins, K. Moszynski, B.G. Lyeth, W. Lewelt, D.S. DeWitt, and A. Allen Increased vulnerability of the mildly traumatized rat brain to cerebral ischemia: the use of controlled secondary ischemia as a research tool to identify common or different mechanisms contributing to mechanical and ischemic brain injury Brain Res 477 1-2 1989 211 224
11. B.C. Son, C.K. Park, B.G. Choi, E.N. Kim, B.Y. Choe, and K.S. Lee Metabolic changes in pericontusional oedematous areas in mild head injury evaluated by 1H MRS Acta Neurochir 76 Suppl 2000 13 16
12. M. Gaetz The neurophysiology of brain injury Clin Neurophysiol 115 1 2004 4 18
13. B. Voller, T. Benke, K. Benedetto, P. Schnider, E. Auff, and F. Aichner Neuropsychological, MRI and EEG findings after very mild traumatic brain injury Brain Inj 13 10 1999 821 827
14. A. Marmarou, M.A. Foda, W. Van Den Brink, J. Campbell, H. Kita, and K. Demetriadou A new model of diffuse brain injury in rats. Part I. Pathophysiology and biomechanics J Neurosurg 80 2 1994 291 300
15. T. Ucar, G. Tanriover, I. Gurer, M.Z. Onal, and S. Kazan Modified experimental mild traumatic brain injury model J Trauma 60 3 2006 558 565
16. A. Subramanian, P. Tamayo, V.K. Mootha, S. Mukherjee, B.L. Ebert, and M.A. Gillette Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles Proc Natl Acad Sci U S A 102 43 2005 15545 15550
17. M. Yuzaki Cbln and C1q family proteins: new transneuronal cytokines Cell Mol Life Sci 65 June (11) 2008 1698 1705
18. T. Iijima, E. Miura, M. Watanabe, and M. Yuzaki Distinct expression of C1q-like family mRNAs in mouse brain and biochemical characterization of their encoded proteins Eur J Neurosci 31 May (9) 2010 1606 1615
19. M. Yuzaki Synapse formation and maintenance by C1q family proteins: a new class of secreted synapse organizers Eur J Neurosci 32 July (2) 2010 191 197 10.1111/j.1460-9568.2010.07346.x [Epub 2010 July 14]
20. J.R. Slemmon, W. Danho, J.L. Hempstead, and J.I. Morgan Cerebellin: a quantifiable marker for Purkinje cell maturation Proc Natl Acad Sci U S A 82 1985 7145 7148
21. Y. Urade, J. Oberdick, R. Molinar-Rode, and J.I. Morgan Precerebellin is a cerebellum-specific protein with similarity to the globular domain of complement C1q B chain Proc Natl Acad Sci U S A 88 1991 1069 1073
22. B. Stevens, N.J. Allen, L.E. Vazquez, G.R. Howell, K.S. Christopherson, and N. Nouri The classical complement cascade mediates CNS synapse elimination Cell 131 December (6) 2007 1164 1178
23. N. Kamei, N. Tanaka, Y. Oishi, T. Hamasaki, K. Nakanishi, and N. Sakai BDNF NT-3 and NGF released from transplanted neural progenitor cells promote corticospinal axon growth in organotypic cocultures Spine 2007 1272 1278
24. M. Sasaki, C. Radtke, A.M. Tan, P. Zhao, H. Hamada, and K. Houkin BDNF-hypersecreting human mesenchymal stem cells promote functional recovery, axonal sprouting, and protection of corticospinal neurons after spinal cord injury J Neurosci 29 2009 14932 14941
25. H. Nagase, and J.F Woessner Jr. Matrix metalloproteinases J Biol Chem 274 1999 21491 21494
26. S. Zucker, H. Mirza, C.E. Conner, A.F. Lorenz, M.H. Drews, and W.F. Bahou Vascular endothelial growth factor induces tissue factor and matrix metalloproteinase production in endothelial cells: conversion of prothrombin to thrombin results in progelatinase A activation and cell proliferation Int J Cancer 75 1998 780 786
27. V. Yong, C. Krekoski, P. Forsyth, R. Bell, and D. Edwards Matrix metalloproteinases and diseases of the CNS Trends Neurosci 21 1998 75 80
28. M. Del Bigio, J. Tchelingerian, and C. Jacque Expression of extracellular matrix degrading enzymes during migration of xenografted brain cells Neuropathol Appl Neurobiol 25 1999 54 62
29. L.Y. Oh, P.H. Larsen, C.A. Krekoski, D.R. Edwards, F. Donovan, and Z. Werb Matrix metalloproteinase-9/gelatinase B is required for process outgrowth by oligodendrocytes J Neurosci 19 1999 8464 8475
30. C. Xing, S. Lee, W.J. Kim, G. Jin, Y.G. Yang, and X. Ji Role of oxidative stress and caspase 3 in CD47-mediated neuronal cell death J Neurochem 108 2009 430 436
31. C. Xing, S. Lee, W.J. Kim, H. Wang, Y.G. Yang, and M. Ning Neurovascular effects of CD47 signaling: promotion of cell death, inflammation and suppression of angiogenesis in brain endothelial cells in vitro J Neurosci Res 87 2009 2571 2577
32. J.S. Isenberg, M.J. Romeo, C. Yu, C.K. Yu, K. Nghiem, and J. Monsale Thrombospondin-1 stimulates platelet aggregation by blocking the antithrombotic activity of nitric oxide/cGMP signaling Blood 111 2008 613 623
33. M. Bernfield, M. Götte, P.W. Park, O. Reizes, M.L. Fitzgerald, and J. Lincecum Functions of cell surface heparan sulfate proteoglycans Annu Rev Biochem 68 1999 729 777
34. M.C. Kiefer, J.C. Stephans, K. Crawford, K. Okino, and P.J. Barr Ligand-affinity cloning and structure of a cell surface heparin sulfate proteoglycan that binds basic fibroblast growth factor Proc Natl Acad Sci U S A 87 1990 6985 6989
35. P. Jaakkola, and M. Jalkanen Transcriptional regulation of syndecan-1 expression by growth factors Prog Nucl Acid Res Mol Biol 63 1999 109 138
36. C.Y. Sun, Y. Hu, H.F. Wang, W.J. He, Y.D. Wang, and T. Wu Brain-derived neurotrophic factor inducing angiogenesis through modulation of matrix-degrading proteases Chin Med J (Engl) 119 April (7) 2006 589 595
37. J. Chen, Z.G. Zhang, Y. Li, Y. Wang, L. Wang, and H. Jiang Statins induce angiogenesis, neurogenesis, and synaptogenesis after stroke Ann Neurol 53 6 2003 743 751
38. M. Chopp, Z.G. Zhang, and Q. Jiang Neurogenesis, angiogenesis, and MRI indices of functional recovery from stroke Stroke 38 Suppl. 2 2007 827 831
39. Y. Xiong, D. Lu, C. Qu, A. Goussev, T. Schallert, and A. Mahmood Effects of erythropoietin on reducing brain damage and improving functional outcome after traumatic brain injury in mice J Neurosurg 109 3 2008 510 521
40. Y. Zhang, Y. Xiong, A. Mahmood, Y. Meng, C. Qu, and T. Schallert Therapeutic effects of erythropoietin on histological and functional outcomes following traumatic brain injury in rats are independent of hematocrit Brain Res 1294 2009 153 164
41. Z.G. Zhang, and M. Chopp Neurorestorative therapies for stroke: underlying mechanisms and translation to the clinic Lancet Neurol 8 5 2009 491 500
42. J.H. Oh, J.H. Kim, H.J. Ahn, J.H. Yoon, S.C. Yoo, and D.S. Choi Syndecan-1 enhances the endometrial cancer invasion by modulating matrix metalloproteinase-9 expression through nuclear factor kappaB Gynecol Oncol 114 September (3) 2009 509 515 [Epub 2009 June 17]
43. H.E. de Vries, J.J. Hendriks, H. Honing, C.R. De Lavalette, S.M. van der Pol, and E. Hooijberg Signal-regulatory protein alpha-CD47 interactions are required for the transmigration of monocytes across cerebral endothelium J Immunol 168 June (11) 2002 5832 5839
44. M.I. Reinhold, F.P. Lindberg, D. Plas, S. Reynolds, M.G. Peters, and E.J. Brown In vivo expression of alternatively spliced forms of integrin-associated protein (CD47) J Cell Sci 108 November (Pt 11) 1995 3419 3425
45. H. Koshimizu, T. Araki, S. Takai, D. Yokomaku, Y. Ishikawa, and M. Kubota Expression of CD47/integrin-associated protein induces death of cultured cerebral cortical neurons J Neurochem 82 July (2) 2002 249 257
46. G. Jin, K. Tsuji, C. Xing, Y.G. Yang, X. Wang, and E.H. Lo CD47 gene knockout protects against transient focal cerebral ischemia in mice Exp Neurol 217 2009 165 170