Application of experimentally verified transcription factor binding sites models for computational analysis of ChIP-Seq data

BMC Genomics

Volumn 15, Issue 1, 2014, Pages

  Levitsky, Victor G ^a,b   Kulakovskiy, Ivan V ^c,d   Ershov, Nikita I ^a   Oshchepkov, Dmitry Y ^a   Makeev, Vsevolod J ^c,d   Hodgman, T C ^e   Merkulova, Tatyana I ^a,b  

^a INSTITUTE OF CYTOLOGY AND GENETICS   (Russian Federation)

^b NOVOSIBIRSK STATE UNIVERSITY   (Russian Federation)

^c ENGELHARDT INSTITUTE OF MOLECULAR BIOLOGY   (Russian Federation)

^d VAVILOV INSTITUTE OF GENERAL GENETICS   (Russian Federation)

^e UNIVERSITY OF NOTTINGHAM   (United Kingdom)

Author keywords

ChIP Seq; Dinucleotide frequencies; EMSA; FoxA; PWM; SiteGA; Transcription factor binding model; Transcription factor binding sites

Indexed keywords

HEPATOCYTE NUCLEAR FACTOR 3BETA; TRANSCRIPTION FACTOR;

ANIMAL TISSUE; ARTICLE; BINDING AFFINITY; CHROMATIN IMMUNOPRECIPITATION; CONTROLLED STUDY; DATA ANALYSIS; FALSE POSITIVE RESULT; GENE LOCUS; HUMAN; HUMAN CELL; LIVER CELL; MATHEMATICAL COMPUTING; MATHEMATICAL MODEL; MOUSE; NONHUMAN; NUCLEOTIDE BINDING SITE; SEQUENCE DATABASE; ANIMAL; BINDING SITE; BIOLOGY; METABOLISM;

ANIMALS; BINDING SITES; CHROMATIN IMMUNOPRECIPITATION; COMPUTATIONAL BIOLOGY; MICE; TRANSCRIPTION FACTORS;

EID: 84892985714     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-15-80     Document Type: Article

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