메뉴 건너뛰기




Volumn 50, Issue 1, 2014, Pages 47-67

Morphology and phylogeny of Bryophryoides ocellatus n. g., n. sp. (Ciliophora, Colpodea) from in situ soil percolates of Idaho, U.S.A.

Author keywords

18S rRNA gene; Bryophryidae; Cortical alveoli; Silverline pattern; Single cell PCR; Vestibulum

Indexed keywords

CILIOPHORA; COLPODEA; COLPODIDA; PSEUDOPLATYOPHRYA;

EID: 84892895750     PISSN: 09324739     EISSN: 16180429     Source Type: Journal    
DOI: 10.1016/j.ejop.2013.09.001     Document Type: Article
Times cited : (9)

References (44)
  • 1
    • 0021709991 scopus 로고
    • An improved pyridinated silver carbonate method which needs few specimens and yields permanent slides of impregnated ciliates (Protozoa, Ciliophora)
    • Augustin H., Foissner W. An improved pyridinated silver carbonate method which needs few specimens and yields permanent slides of impregnated ciliates (Protozoa, Ciliophora). Mikroskopie 1984, 41:134-137.
    • (1984) Mikroskopie , vol.41 , pp. 134-137
    • Augustin, H.1    Foissner, W.2
  • 2
    • 41149101572 scopus 로고    scopus 로고
    • Puytoraciella dibryophryis- Ein afrikanischer Flaggschiff-Ciliat, aufgefunden in Idaho (Nordwesten USA)
    • Bourland W. Puytoraciella dibryophryis- Ein afrikanischer Flaggschiff-Ciliat, aufgefunden in Idaho (Nordwesten USA). Mikrokosmos 2008, 97:65-69.
    • (2008) Mikrokosmos , vol.97 , pp. 65-69
    • Bourland, W.1
  • 3
    • 78650634099 scopus 로고    scopus 로고
    • Morphology, morphometrics, and molecular characterization of Bryophrya gemmea n. sp. (Ciliophora, Colpodea): implications for the phylogeny and evolutionary scenario for the formation of oral ciliature in the order Colpodida
    • Bourland W., Vďačný P., Davis M.C., Hampikian G. Morphology, morphometrics, and molecular characterization of Bryophrya gemmea n. sp. (Ciliophora, Colpodea): implications for the phylogeny and evolutionary scenario for the formation of oral ciliature in the order Colpodida. J. Eukaryot. Microbiol. 2011, 58:22-36.
    • (2011) J. Eukaryot. Microbiol. , vol.58 , pp. 22-36
    • Bourland, W.1    Vďačný, P.2    Davis, M.C.3    Hampikian, G.4
  • 4
    • 84862178017 scopus 로고    scopus 로고
    • Morphology and phylogeny of a new woodruffiid ciliate, Etoschophrya inornata sp. n. (Ciliophora, Colpodea, Platyophryida), with an account on evolution of platyophryids
    • Bourland W., Hampikian G., Vďačný P. Morphology and phylogeny of a new woodruffiid ciliate, Etoschophrya inornata sp. n. (Ciliophora, Colpodea, Platyophryida), with an account on evolution of platyophryids. Zool. Scr. 2012, 41:400-416.
    • (2012) Zool. Scr. , vol.41 , pp. 400-416
    • Bourland, W.1    Hampikian, G.2    Vďačný, P.3
  • 5
    • 1542347067 scopus 로고    scopus 로고
    • NeighborNet: an agglomerative algorithm for the construction of planar phylogenetic networks
    • Bryant D., Moulton V. NeighborNet: an agglomerative algorithm for the construction of planar phylogenetic networks. Mol. Biol. Evol. 2004, 21:255-265.
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 255-265
    • Bryant, D.1    Moulton, V.2
  • 6
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol. Biol. Evol. 2000, 17:540-552.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 540-552
    • Castresana, J.1
  • 7
    • 84864453108 scopus 로고    scopus 로고
    • JModelTest 2: more models, new heuristics and parallel computing
    • Darriba D., Taboada G.L., Doallo R.P.D. jModelTest 2: more models, new heuristics and parallel computing. Nat. Methods 2012, 9:772.
    • (2012) Nat. Methods , vol.9 , pp. 772
    • Darriba, D.1    Taboada, G.L.2    Doallo, R.P.D.3
  • 8
    • 37249048389 scopus 로고    scopus 로고
    • Molecular phylogenetic analysis of class Colpodea (phylum Ciliophora) using broad taxon sampling
    • Dunthorn M., Foissner W., Katz L.A. Molecular phylogenetic analysis of class Colpodea (phylum Ciliophora) using broad taxon sampling. Mol. Phylogenet. Evol. 2008, 46:316-327.
    • (2008) Mol. Phylogenet. Evol. , vol.46 , pp. 316-327
    • Dunthorn, M.1    Foissner, W.2    Katz, L.A.3
  • 9
    • 78650415756 scopus 로고    scopus 로고
    • Expanding character sampling for ciliate phylogenetic inference using mitochondrial SSU-rDNA as a molecular marker
    • Dunthorn M., Foissner W., Katz L.A. Expanding character sampling for ciliate phylogenetic inference using mitochondrial SSU-rDNA as a molecular marker. Protist 2011, 162:85-99.
    • (2011) Protist , vol.162 , pp. 85-99
    • Dunthorn, M.1    Foissner, W.2    Katz, L.A.3
  • 10
    • 84867100452 scopus 로고    scopus 로고
    • Congruence and indifference between two molecular markers for understanding oral evolution in the Marynidae sensu lato (Ciliophora: Colpodea)
    • Dunthorn M., Katz L., Stoeck A., Foissner T.W. Congruence and indifference between two molecular markers for understanding oral evolution in the Marynidae sensu lato (Ciliophora: Colpodea). Eur. J. Protistol. 2012, 48:297-304.
    • (2012) Eur. J. Protistol. , vol.48 , pp. 297-304
    • Dunthorn, M.1    Katz, L.2    Stoeck, A.3    Foissner, T.W.4
  • 11
    • 0009467931 scopus 로고
    • Miscellanea nomenclatorica Ciliatea (Protozoa: Ciliophora)
    • Foissner W. Miscellanea nomenclatorica Ciliatea (Protozoa: Ciliophora). Arch. Protistenk. 1987, 133:219-235.
    • (1987) Arch. Protistenk. , vol.133 , pp. 219-235
    • Foissner, W.1
  • 12
    • 0005542842 scopus 로고
    • Basic light and electron microscopic methods for taxonomic studies of ciliated protozoa
    • Foissner W. Basic light and electron microscopic methods for taxonomic studies of ciliated protozoa. Eur. J. Protistol. 1991, 27:313-330.
    • (1991) Eur. J. Protistol. , vol.27 , pp. 313-330
    • Foissner, W.1
  • 13
    • 0002190835 scopus 로고
    • Colpodea (Ciliophora)
    • i-x
    • Foissner W. Colpodea (Ciliophora). Protozoenfauna 4/1 1993, 1-798. i-x.
    • (1993) Protozoenfauna 4/1 , pp. 1-798
    • Foissner, W.1
  • 14
    • 0041347561 scopus 로고    scopus 로고
    • Pseudomaryna australiensis nov. gen., nov. spec. and Colpoda brasiliensis nov. spec, two new colpodids (Ciliophora, Colpodea) with a mineral envelope
    • Foissner W. Pseudomaryna australiensis nov. gen., nov. spec. and Colpoda brasiliensis nov. spec, two new colpodids (Ciliophora, Colpodea) with a mineral envelope. Eur. J. Protistol. 2003, 39:199-212.
    • (2003) Eur. J. Protistol. , vol.39 , pp. 199-212
    • Foissner, W.1
  • 15
    • 77957322025 scopus 로고    scopus 로고
    • Life cycle, morphology, ontogenesis, and phylogeny of Bromeliothrix metopoides nov. gen, nov. spec., a peculiar ciliate (Protista, Colpodea) from tank bromeliads (Bromeliaceae)
    • Foissner W. Life cycle, morphology, ontogenesis, and phylogeny of Bromeliothrix metopoides nov. gen, nov. spec., a peculiar ciliate (Protista, Colpodea) from tank bromeliads (Bromeliaceae). Acta Protozool. 2010, 49:159-193.
    • (2010) Acta Protozool. , vol.49 , pp. 159-193
    • Foissner, W.1
  • 16
    • 33644601049 scopus 로고    scopus 로고
    • A unified organization of the stichotrichine oral apparatus, including a description of the buccal seal (Ciliophora Spirotrichea)
    • Foissner W., Al-Rasheid K.A.S. A unified organization of the stichotrichine oral apparatus, including a description of the buccal seal (Ciliophora Spirotrichea). Acta Protozool. 2006, 45:1-16.
    • (2006) Acta Protozool. , vol.45 , pp. 1-16
    • Foissner, W.1    Al-Rasheid, K.A.S.2
  • 17
    • 0016588286 scopus 로고
    • Vergleichende licht und rasterelektronenmikroskopische Unterschungen an trocken präparierten Silberliniensystemen von Ciliaten (Protozoa)
    • Foissner W., Simonsberger P. Vergleichende licht und rasterelektronenmikroskopische Unterschungen an trocken präparierten Silberliniensystemen von Ciliaten (Protozoa). Mikroskopie 1975, 31:193-205.
    • (1975) Mikroskopie , vol.31 , pp. 193-205
    • Foissner, W.1    Simonsberger, P.2
  • 18
    • 69949102037 scopus 로고    scopus 로고
    • Morphological and molecular characterization of a new protist family, Sandmanniellidae n. fam. (Ciliophora, Colpodea), with description of Sandmanniella terricola n. g., n. sp. from the Chobe floodplain in Botswana
    • Foissner W., Stoeck T. Morphological and molecular characterization of a new protist family, Sandmanniellidae n. fam. (Ciliophora, Colpodea), with description of Sandmanniella terricola n. g., n. sp. from the Chobe floodplain in Botswana. J. Eukaryot. Microbiol. 2009, 56:472-483.
    • (2009) J. Eukaryot. Microbiol. , vol.56 , pp. 472-483
    • Foissner, W.1    Stoeck, T.2
  • 19
    • 35148814437 scopus 로고    scopus 로고
    • Monograph of the Spathidiida (Ciliophora, Haptoria). Vol. I. Protospathidiidae, Arcuospathidiidae, Apertospathulidae
    • Foissner W., Xu K. Monograph of the Spathidiida (Ciliophora, Haptoria). Vol. I. Protospathidiidae, Arcuospathidiidae, Apertospathulidae. Monogr. Biol. 2007, 81:1-485.
    • (2007) Monogr. Biol. , vol.81 , pp. 1-485
    • Foissner, W.1    Xu, K.2
  • 20
    • 0002083564 scopus 로고    scopus 로고
    • Soil ciliates (Protozoa, Ciliophora) from Namibia (Southwest Africa), with emphasis on two contrasting environments, the Etosha Region and the Namib Desert
    • Foissner W., Agatha S., Berger H. Soil ciliates (Protozoa, Ciliophora) from Namibia (Southwest Africa), with emphasis on two contrasting environments, the Etosha Region and the Namib Desert. Denisia 2002, 5:1-1459.
    • (2002) Denisia , vol.5 , pp. 1-1459
    • Foissner, W.1    Agatha, S.2    Berger, H.3
  • 21
    • 80053201473 scopus 로고    scopus 로고
    • Intraclass evolution and classification of the Colpodea (Ciliophora)
    • Foissner W., Stoeck T., Agatha S., Dunthorn M. Intraclass evolution and classification of the Colpodea (Ciliophora). J. Eukaryot. Microbiol. 2011, 58:397-415.
    • (2011) J. Eukaryot. Microbiol. , vol.58 , pp. 397-415
    • Foissner, W.1    Stoeck, T.2    Agatha, S.3    Dunthorn, M.4
  • 22
    • 0005922692 scopus 로고
    • Étude des infraciliatures somatique et buccale de Bryophrya bavariensis et considérations systématiques
    • Grain J., Iftode F., Fryd-Versavel G. Étude des infraciliatures somatique et buccale de Bryophrya bavariensis et considérations systématiques. Protistologica 1979, 15:581-595.
    • (1979) Protistologica , vol.15 , pp. 581-595
    • Grain, J.1    Iftode, F.2    Fryd-Versavel, G.3
  • 23
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast and accurate method to estimate large phylogenies by maximum-likelihood
    • Guindon S., Gascuel O. A simple, fast and accurate method to estimate large phylogenies by maximum-likelihood. Syst. Biol. 2003, 52:696-704.
    • (2003) Syst. Biol. , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 24
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • Huelsenbeck J.P., Ronquist F. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 2001, 17:754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 25
    • 0031678692 scopus 로고    scopus 로고
    • SplitsTree: a program for analyzing and visualizing evolutionary data
    • Huson D.H. SplitsTree: a program for analyzing and visualizing evolutionary data. Bioinformatics 1998, 14:68-73.
    • (1998) Bioinformatics , vol.14 , pp. 68-73
    • Huson, D.H.1
  • 26
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • Huson D.H., Bryant D. Application of phylogenetic networks in evolutionary studies. Mol. Biol. Evol. 2006, 23:254-267.
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 27
    • 0003775022 scopus 로고    scopus 로고
    • International Commission on Zoological Nomenclature (ICZN), The International Trust for Zoological Nomenclature, London
    • International Code of Zoological Nomenclature 1999, International Commission on Zoological Nomenclature (ICZN), The International Trust for Zoological Nomenclature, London. fourth ed.
    • (1999) International Code of Zoological Nomenclature
  • 28
    • 45949107473 scopus 로고    scopus 로고
    • Recent developments in the MAFFT multiple sequence alignment program
    • Katoh K., Toh H. Recent developments in the MAFFT multiple sequence alignment program. Briefings Bioinf. 2008, 9:286-298.
    • (2008) Briefings Bioinf. , vol.9 , pp. 286-298
    • Katoh, K.1    Toh, H.2
  • 29
    • 0742312936 scopus 로고    scopus 로고
    • Filamentous cyanobacteria
    • Academic Press, New York, J.D. Wehr, R.G. Sheath (Eds.)
    • Komárek J., Kling H., Komáková J. Filamentous cyanobacteria. Freshwater Algae of North America 2003, 918. Academic Press, New York. J.D. Wehr, R.G. Sheath (Eds.).
    • (2003) Freshwater Algae of North America , pp. 918
    • Komárek, J.1    Kling, H.2    Komáková, J.3
  • 30
    • 0345334495 scopus 로고
    • Comparative ultrastructure and systematics of the Colpodida (Ciliophora): structural differentiation in the cortex of Colpoda simulans
    • Lynn D.H. Comparative ultrastructure and systematics of the Colpodida (Ciliophora): structural differentiation in the cortex of Colpoda simulans. Trans. Am. Microsc. Soc. 1976, 95:581-599.
    • (1976) Trans. Am. Microsc. Soc. , vol.95 , pp. 581-599
    • Lynn, D.H.1
  • 32
    • 0032955638 scopus 로고    scopus 로고
    • Phylogenetic relationships of orders within the class Colpodea (Phylum Ciliophora) inferred from small subunit rRNA gene sequences
    • Lynn D.H., Wright A.D.G., Schlegel M.K., Foissner W. Phylogenetic relationships of orders within the class Colpodea (Phylum Ciliophora) inferred from small subunit rRNA gene sequences. J. Mol. Evol. 1999, 48:605-614.
    • (1999) J. Mol. Evol. , vol.48 , pp. 605-614
    • Lynn, D.H.1    Wright, A.D.G.2    Schlegel, M.K.3    Foissner, W.4
  • 33
    • 0003873411 scopus 로고
    • Compléments a l'étude des ciliés libres du Cameroun
    • Njine T. Compléments a l'étude des ciliés libres du Cameroun. Protistologica 1979, 15:343-354.
    • (1979) Protistologica , vol.15 , pp. 343-354
    • Njine, T.1
  • 34
    • 0006000714 scopus 로고
    • A propos d'observations sur la stomatogeneỳse et l'ultrastructure du cilié Woodruffia metabolica (Johnson et Larson, 1938). Protistologica
    • Puytorac, P. de, Perez-Paniagua, F., Perez-Silva, J., 1979. A propos d'observations sur la stomatogeneỳse et l'ultrastructure du cilié Woodruffia metabolica (Johnson et Larson, 1938). Protistologica 15, 231-243.
    • (1979) , vol.15 , pp. 231-243
    • Puytorac, P.1    De Perez-Paniagua, F.2    Perez-Silva, J.3
  • 36
    • 33947104905 scopus 로고    scopus 로고
    • Statistical tests for taxonomic distinctiveness from observations of monophyly
    • Rosenberg N.A. Statistical tests for taxonomic distinctiveness from observations of monophyly. Evolution 2007, 61:317-323.
    • (2007) Evolution , vol.61 , pp. 317-323
    • Rosenberg, N.A.1
  • 37
    • 0036623258 scopus 로고    scopus 로고
    • An approximately unbiased test of phylogenetic tree selection
    • Shimodaira H. An approximately unbiased test of phylogenetic tree selection. Syst. Biol. 2002, 51:492-508.
    • (2002) Syst. Biol. , vol.51 , pp. 492-508
    • Shimodaira, H.1
  • 38
    • 38149079760 scopus 로고    scopus 로고
    • Testing regions with nonsmooth boundaries via multiscale bootstrap
    • Shimodaira H. Testing regions with nonsmooth boundaries via multiscale bootstrap. J. Stat. Plan. Inf. 2008, 138:1227-1241.
    • (2008) J. Stat. Plan. Inf. , vol.138 , pp. 1227-1241
    • Shimodaira, H.1
  • 39
    • 0036139287 scopus 로고    scopus 로고
    • CONSEL: for assessing the confidence of phylogenetic tree selection
    • Shimodaira H., Hasegawa M. CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics 2001, 17:1246-1247.
    • (2001) Bioinformatics , vol.17 , pp. 1246-1247
    • Shimodaira, H.1    Hasegawa, M.2
  • 40
    • 0019739872 scopus 로고
    • A new macrosystem for the phylum Ciliophora Doflein, 1901
    • Small E.B., Lynn D.H. A new macrosystem for the phylum Ciliophora Doflein, 1901. Biosystems 1981, 14:387-401.
    • (1981) Biosystems , vol.14 , pp. 387-401
    • Small, E.B.1    Lynn, D.H.2
  • 41
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 2006, 22:2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 42
    • 17944386563 scopus 로고    scopus 로고
    • Sequence analyses of the small subunit rRNA gene confirm the paraphyly of oligotrich ciliates sensu lato and support the monophyly of the subclasses Oligotrichia and Choreotrichia (Ciliophora, Spirotrichea)
    • Strüder-Kypke M.C., Lynn D.H. Sequence analyses of the small subunit rRNA gene confirm the paraphyly of oligotrich ciliates sensu lato and support the monophyly of the subclasses Oligotrichia and Choreotrichia (Ciliophora, Spirotrichea). J. Zool. 2003, 260:87-97.
    • (2003) J. Zool. , vol.260 , pp. 87-97
    • Strüder-Kypke, M.C.1    Lynn, D.H.2
  • 43
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood evolutionary distance, and maximum parsimony methods
    • Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28:2731-2739.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 44
    • 84863567046 scopus 로고    scopus 로고
    • Monograph of the dileptids (Protista, Ciliophora, Rhynchostomatia)
    • Vďačný P., Foissner W. Monograph of the dileptids (Protista, Ciliophora, Rhynchostomatia). Denisia 2012, 31:1-529.
    • (2012) Denisia , vol.31 , pp. 1-529
    • Vďačný, P.1    Foissner, W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.