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Volumn 162, Issue 1, 2011, Pages 85-99

Expanding character sampling for ciliate phylogenetic inference using mitochondrial SSU-rDNA as a molecular marker

Author keywords

Ciliophora; Colpodea; Mitochondrial SSU rDNA; Nuclear SSU rDNA; Phylogeny

Indexed keywords

RIBOSOME DNA;

EID: 78650415756     PISSN: 14344610     EISSN: 16180941     Source Type: Journal    
DOI: 10.1016/j.protis.2010.06.003     Document Type: Article
Times cited : (32)

References (74)
  • 1
    • 2542488450 scopus 로고    scopus 로고
    • Phylogenetic position of species in the genera Anoplophrya, Plagiotoma, and Nyctotheroides (Phylum Ciliophora), endosymbiotic ciliates of annelids and anurans
    • Affa'a F.M., Hickey D.A., Strüder-Kypke M., Lynn D.H. Phylogenetic position of species in the genera Anoplophrya, Plagiotoma, and Nyctotheroides (Phylum Ciliophora), endosymbiotic ciliates of annelids and anurans. J Eukaryot Microbiol 2004, 51:301-306.
    • (2004) J Eukaryot Microbiol , vol.51 , pp. 301-306
    • Affa'a, F.M.1    Hickey, D.A.2    Strüder-Kypke, M.3    Lynn, D.H.4
  • 2
    • 3042642395 scopus 로고    scopus 로고
    • Evolution of ciliary patterns in the Oligotrichida (Ciliophora, Spirotricha) and its taxonomic implications
    • Agatha S. Evolution of ciliary patterns in the Oligotrichida (Ciliophora, Spirotricha) and its taxonomic implications. Zoology 2004, 107:153-168.
    • (2004) Zoology , vol.107 , pp. 153-168
    • Agatha, S.1
  • 3
    • 33846002349 scopus 로고    scopus 로고
    • Phylogeny of the order Choreotrichida (Ciliophora, Spriotricha, Oligotrichea) as inferred from morphology, ultrastructure, ontogenesis, and SSrRNA sequences
    • Agatha S., Strüder-Kypke M. Phylogeny of the order Choreotrichida (Ciliophora, Spriotricha, Oligotrichea) as inferred from morphology, ultrastructure, ontogenesis, and SSrRNA sequences. Eur J Protistol 2007, 43:37-63.
    • (2007) Eur J Protistol , vol.43 , pp. 37-63
    • Agatha, S.1    Strüder-Kypke, M.2
  • 4
    • 38549153184 scopus 로고    scopus 로고
    • High mitochondrial haplotype diversity of Coleps sp. (Ciliophora: Prostomatida)
    • Barth D., Tischer K., Berger H., Schlegel M., Berendonk T.U. High mitochondrial haplotype diversity of Coleps sp. (Ciliophora: Prostomatida). Environ Microbiol 2008, 10:626-634.
    • (2008) Environ Microbiol , vol.10 , pp. 626-634
    • Barth, D.1    Tischer, K.2    Berger, H.3    Schlegel, M.4    Berendonk, T.U.5
  • 5
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 2000, 17:540-552.
    • (2000) Mol Biol Evol , vol.17 , pp. 540-552
    • Castresana, J.1
  • 7
    • 56549109620 scopus 로고    scopus 로고
    • Phylogenetic relationships within the genus Tetrahymena inferred from cytochrome c oxidase subunit 1 and the smal subunit ribosomal RMA genes
    • Chantangsi C., Lynn D.H. Phylogenetic relationships within the genus Tetrahymena inferred from cytochrome c oxidase subunit 1 and the smal subunit ribosomal RMA genes. Mol Phylogenet Evol 2008, 49:979-987.
    • (2008) Mol Phylogenet Evol , vol.49 , pp. 979-987
    • Chantangsi, C.1    Lynn, D.H.2
  • 9
    • 27744543065 scopus 로고    scopus 로고
    • Magic bullets and golden rules: data sampling in molecular phylogenetics
    • Cummings M.P., Meyer A. Magic bullets and golden rules: data sampling in molecular phylogenetics. Zoology 2005, 108:329-336.
    • (2005) Zoology , vol.108 , pp. 329-336
    • Cummings, M.P.1    Meyer, A.2
  • 10
    • 0000989175 scopus 로고
    • Gene trees and species trees: molecular systematics as one-character taxonomy
    • Doyle J.J. Gene trees and species trees: molecular systematics as one-character taxonomy. Syst Bot 1992, 17:144-163.
    • (1992) Syst Bot , vol.17 , pp. 144-163
    • Doyle, J.J.1
  • 11
    • 0031221403 scopus 로고    scopus 로고
    • Trees within trees: genes and species, molecules and morphology
    • Doyle J.J. Trees within trees: genes and species, molecules and morphology. Syst Biol 1997, 46:537-553.
    • (1997) Syst Biol , vol.46 , pp. 537-553
    • Doyle, J.J.1
  • 12
    • 78650415875 scopus 로고    scopus 로고
    • Richness of morphological hypotheses in ciliate systematics allows for detailed assessment of homology and comparisons with gene trees
    • Dunthorn M., Katz L.A. Richness of morphological hypotheses in ciliate systematics allows for detailed assessment of homology and comparisons with gene trees. Denisia 2008, 23:389-394.
    • (2008) Denisia , vol.23 , pp. 389-394
    • Dunthorn, M.1    Katz, L.A.2
  • 13
    • 77952553005 scopus 로고    scopus 로고
    • Secretive ciliates and putative asexuality in microbial eukaryotes
    • Dunthorn M., Katz L.A. Secretive ciliates and putative asexuality in microbial eukaryotes. Trends Microbiol 2010, 18:183-188.
    • (2010) Trends Microbiol , vol.18 , pp. 183-188
    • Dunthorn, M.1    Katz, L.A.2
  • 14
    • 37249048389 scopus 로고    scopus 로고
    • Molecular phylogenetic analysis of class Colpodea (phylum Ciliophora) using broad taxon sampling
    • Dunthorn M., Foissner W., Katz L.A. Molecular phylogenetic analysis of class Colpodea (phylum Ciliophora) using broad taxon sampling. Mol Phylogenet Evol 2008, 48:316-327.
    • (2008) Mol Phylogenet Evol , vol.48 , pp. 316-327
    • Dunthorn, M.1    Foissner, W.2    Katz, L.A.3
  • 15
    • 60549091068 scopus 로고    scopus 로고
    • Phylogenetic placement of the Cyrtolophosididae Stokes, 1888 (Ciliophora; Colpodea) and neotypification of Aristerostoma marinum Kahl, 1931
    • Dunthorn M., Eppinger M., Schwarz M.V.J., Schweikert M., Boenigk J., Katz L.A., Stoeck T. Phylogenetic placement of the Cyrtolophosididae Stokes, 1888 (Ciliophora; Colpodea) and neotypification of Aristerostoma marinum Kahl, 1931. Int J Syst Evol Microbiol 2009, 59:167-180.
    • (2009) Int J Syst Evol Microbiol , vol.59 , pp. 167-180
    • Dunthorn, M.1    Eppinger, M.2    Schwarz, M.V.J.3    Schweikert, M.4    Boenigk, J.5    Katz, L.A.6    Stoeck, T.7
  • 16
    • 78650417305 scopus 로고
    • Colpodea (Ciliophora). Protozoenfauna 4/1:i-x,
    • Foissner W (1993) Colpodea (Ciliophora). Protozoenfauna 4/1:i-x, 1-798.
    • (1993) , pp. 1-798
    • Foissner, W.1
  • 17
    • 0032415416 scopus 로고    scopus 로고
    • Systematic position and phylogenetic relationships of the genera Bursaridium, Paracondylostoma, Thylakidium, Bryometopus, and Bursaria (Ciliophora: Colpodea)
    • Foissner W., Kreutz M. Systematic position and phylogenetic relationships of the genera Bursaridium, Paracondylostoma, Thylakidium, Bryometopus, and Bursaria (Ciliophora: Colpodea). Acta Protozool 1998, 37:227-240.
    • (1998) Acta Protozool , vol.37 , pp. 227-240
    • Foissner, W.1    Kreutz, M.2
  • 18
    • 69949102037 scopus 로고    scopus 로고
    • Morphological and molecular characterization of a new protist family, Sandmanniellidae n. fam. (Ciliophora, Colpodea), with description of Sandmanniella terricola n. g., n. sp. from the Chobe floodplain in Botswana
    • Foissner W., Stoeck T. Morphological and molecular characterization of a new protist family, Sandmanniellidae n. fam. (Ciliophora, Colpodea), with description of Sandmanniella terricola n. g., n. sp. from the Chobe floodplain in Botswana. J Eukaryot Microbiol 2009, 56:472-483.
    • (2009) J Eukaryot Microbiol , vol.56 , pp. 472-483
    • Foissner, W.1    Stoeck, T.2
  • 19
    • 0002083564 scopus 로고    scopus 로고
    • Soil ciliates (Protozoa, Ciliophora) from Namibia (Southwest Africa), with emphasis on two contrasting environments, the Etosha Region and the Namib Desert
    • Foissner W., Agatha S., Berger H. Soil ciliates (Protozoa, Ciliophora) from Namibia (Southwest Africa), with emphasis on two contrasting environments, the Etosha Region and the Namib Desert. Densia 2002, 5:1-1459.
    • (2002) Densia , vol.5 , pp. 1-1459
    • Foissner, W.1    Agatha, S.2    Berger, H.3
  • 20
    • 4444334657 scopus 로고    scopus 로고
    • Reconciling classical and molecular phylogenies in the stichotrichines (Ciliophora, Spirotrichea), including new sequences from some rare species
    • Foissner W., Moon-van der Staay S.Y., van der Staay G.W.M., Hackstein J.H.P., Krautgartner W.-D., Berger H. Reconciling classical and molecular phylogenies in the stichotrichines (Ciliophora, Spirotrichea), including new sequences from some rare species. Eur J Protistol 2004, 40:265-281.
    • (2004) Eur J Protistol , vol.40 , pp. 265-281
    • Foissner, W.1    Moon-van der Staay, S.Y.2    van der Staay, G.W.M.3    Hackstein, J.H.P.4    Krautgartner, W.-D.5    Berger, H.6
  • 21
    • 66249084524 scopus 로고    scopus 로고
    • High-level genetic diversity bot no population structure inferred from nuclear and mitochondrial markers of the peritrichous ciliate Carchesium polypinum in the Grand River Bason (North America)
    • Gentekaki E., Lynn D.H. High-level genetic diversity bot no population structure inferred from nuclear and mitochondrial markers of the peritrichous ciliate Carchesium polypinum in the Grand River Bason (North America). Appl Environ Microbiol 2009, 75:3187-3195.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 3187-3195
    • Gentekaki, E.1    Lynn, D.H.2
  • 22
    • 67651176181 scopus 로고    scopus 로고
    • Small subunit rDNA phylogenies show that the class Nassophorea is not monophyletic (Phylum Ciliophora). J Eukaryot Microbiol
    • Gong J, Stoeck T, YI Z, Miao M, Zhang N, Roberts DM, Warren A, Song W (2009) Small subunit rDNA phylogenies show that the class Nassophorea is not monophyletic (Phylum Ciliophora). J Eukaryot Microbiol 56:339-347.
    • (2009) , vol.56 , pp. 339-347
    • Gong, J.1    Stoeck, T.2    YI, Z.3    Miao, M.4    Zhang, N.5    Roberts, D.M.6    Warren, A.7    Song, W.8
  • 23
    • 0032025857 scopus 로고    scopus 로고
    • Is it better to add taxa or characters to a difficult phylogenetic problem?
    • Graybeal A. Is it better to add taxa or characters to a difficult phylogenetic problem?. Syst Biol 1998, 47:9-17.
    • (1998) Syst Biol , vol.47 , pp. 9-17
    • Graybeal, A.1
  • 24
    • 0025955189 scopus 로고
    • Phylogenetic relationships within the class oligohymenophorea, phylum Ciliophora, inferred from the complete small subunit rRNA gene sequences of Colpidium campylum, Glaucoma chattoni and Opisthonecta henneguyi
    • Greenwood S.J., Sogin M.L., Lynn D.H. Phylogenetic relationships within the class oligohymenophorea, phylum Ciliophora, inferred from the complete small subunit rRNA gene sequences of Colpidium campylum, Glaucoma chattoni and Opisthonecta henneguyi. J Mol Evol 1991, 33:163-174.
    • (1991) J Mol Evol , vol.33 , pp. 163-174
    • Greenwood, S.J.1    Sogin, M.L.2    Lynn, D.H.3
  • 25
    • 33747339757 scopus 로고    scopus 로고
    • Resolution of phylogenetic conflict in large data sets by increased taxon sampling
    • Hedtke S.M., Townsend T.M., Hillis D.M. Resolution of phylogenetic conflict in large data sets by increased taxon sampling. Syst Biol 2006, 55:522-529.
    • (2006) Syst Biol , vol.55 , pp. 522-529
    • Hedtke, S.M.1    Townsend, T.M.2    Hillis, D.M.3
  • 26
    • 0032023889 scopus 로고    scopus 로고
    • Taxonomic sampling, phylogenetic accuracy, and investigator bias
    • Hillis D.M. Taxonomic sampling, phylogenetic accuracy, and investigator bias. Syst Biol 1998, 47:3-8.
    • (1998) Syst Biol , vol.47 , pp. 3-8
    • Hillis, D.M.1
  • 27
    • 0242669921 scopus 로고    scopus 로고
    • Is sparse taxon sampling a problem for phylogenetic inference?
    • Hillis D.M., Pollock D.D., McGuire J.A., Zwickl D.J. Is sparse taxon sampling a problem for phylogenetic inference?. Syst Biol 2003, 52:124-126.
    • (2003) Syst Biol , vol.52 , pp. 124-126
    • Hillis, D.M.1    Pollock, D.D.2    McGuire, J.A.3    Zwickl, D.J.4
  • 28
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Huelsenbeck J.P., Ronquist F.R. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Huelsenbeck, J.P.1    Ronquist, F.R.2
  • 30
    • 78650416906 scopus 로고    scopus 로고
    • Multiple origins of scrambled coding domains within rapidly evolving germline sequences
    • B
    • Katz L.A., Kovner A.M. Multiple origins of scrambled coding domains within rapidly evolving germline sequences. J Exp Zool (Mol Dev Evol) 2010, 314B.
    • (2010) J Exp Zool (Mol Dev Evol) , vol.314
    • Katz, L.A.1    Kovner, A.M.2
  • 31
    • 1542614590 scopus 로고    scopus 로고
    • Dramatic diversity of ciliate histone H4 genes revealed by comparisons of patterns of substitutions and paralog divergences among eukaryotes
    • Katz L.A., Lasek-Nesselquist E., Bornstein J., Muse S.V. Dramatic diversity of ciliate histone H4 genes revealed by comparisons of patterns of substitutions and paralog divergences among eukaryotes. Mol Biol Evol 2004, 21:555-562.
    • (2004) Mol Biol Evol , vol.21 , pp. 555-562
    • Katz, L.A.1    Lasek-Nesselquist, E.2    Bornstein, J.3    Muse, S.V.4
  • 32
    • 2442691520 scopus 로고    scopus 로고
    • A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process
    • Lartillot N., Philippe H. A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process. Mol Biol Evol 2004, 21:1095-1109.
    • (2004) Mol Biol Evol , vol.21 , pp. 1095-1109
    • Lartillot, N.1    Philippe, H.2
  • 33
    • 69949126557 scopus 로고    scopus 로고
    • PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating
    • Lartillot N., Lepage T., Blanquart S. PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating. Bioinformatics 2009, 25:2286-2288.
    • (2009) Bioinformatics , vol.25 , pp. 2286-2288
    • Lartillot, N.1    Lepage, T.2    Blanquart, S.3
  • 34
    • 0034795860 scopus 로고    scopus 로고
    • Phylogenetic position of Sorogena stoianovitchae and relationships within the class Colpodea (Ciliophora) based on SSU rDNA sequences
    • Lasek-Nesselquist E., Katz L.A. Phylogenetic position of Sorogena stoianovitchae and relationships within the class Colpodea (Ciliophora) based on SSU rDNA sequences. J Eukaryot Microbiol 2001, 48:604-607.
    • (2001) J Eukaryot Microbiol , vol.48 , pp. 604-607
    • Lasek-Nesselquist, E.1    Katz, L.A.2
  • 35
    • 0842345482 scopus 로고    scopus 로고
    • Morphology or molecules: how do we identify the major lineages of ciliates (Phylum Ciliophora)?
    • Lynn D.H. Morphology or molecules: how do we identify the major lineages of ciliates (Phylum Ciliophora)?. Eur J Protistol 2003, 39:356-364.
    • (2003) Eur J Protistol , vol.39 , pp. 356-364
    • Lynn, D.H.1
  • 37
    • 0023744814 scopus 로고
    • Assessment of phylogenetic relationships among ciliated protists using partial ribosomal RNA sequences derived from reverse transcripts
    • Lynn D.H, Sogin M.L. Assessment of phylogenetic relationships among ciliated protists using partial ribosomal RNA sequences derived from reverse transcripts. Biosystems 1988, 21:249-254.
    • (1988) Biosystems , vol.21 , pp. 249-254
    • Lynn, D.H.1    Sogin, M.L.2
  • 38
    • 0036865471 scopus 로고    scopus 로고
    • Phylogenetic position of Licnophora, Lechriopyla, and Schizocaryum, three unusual ciliates (Phylum Ciliophora) endosymbiotic in echinoderms (Phylum Echinodermata)
    • Lynn D.H., Strüder-Kypke M. Phylogenetic position of Licnophora, Lechriopyla, and Schizocaryum, three unusual ciliates (Phylum Ciliophora) endosymbiotic in echinoderms (Phylum Echinodermata). J Eukaryot Microbiol 2002, 49:460-468.
    • (2002) J Eukaryot Microbiol , vol.49 , pp. 460-468
    • Lynn, D.H.1    Strüder-Kypke, M.2
  • 39
    • 33748594230 scopus 로고    scopus 로고
    • Species of Tetrahymena identical by small subunut rRNA gene sequences are discriminated by mitochondrial cytochrome c oxidase I gene sequences
    • Lynn D.H., Strüder-Kypke M. Species of Tetrahymena identical by small subunut rRNA gene sequences are discriminated by mitochondrial cytochrome c oxidase I gene sequences. J Eukaryot Microbiol 2006, 53:385-387.
    • (2006) J Eukaryot Microbiol , vol.53 , pp. 385-387
    • Lynn, D.H.1    Strüder-Kypke, M.2
  • 40
    • 0032955638 scopus 로고    scopus 로고
    • Phylogenetic relationships of orders within the class Colpodea (phylum Ciliophora) inferred from small subunit rRNA gene sequences
    • Lynn D.H., Wright A.D.G., Schlegel M., Foissner W. Phylogenetic relationships of orders within the class Colpodea (phylum Ciliophora) inferred from small subunit rRNA gene sequences. J Mol Evol 1999, 48:605-614.
    • (1999) J Mol Evol , vol.48 , pp. 605-614
    • Lynn, D.H.1    Wright, A.D.G.2    Schlegel, M.3    Foissner, W.4
  • 41
    • 0031504952 scopus 로고    scopus 로고
    • Gene trees in species trees
    • Maddison W.P. Gene trees in species trees. Syst Biol 1997, 46:523-536.
    • (1997) Syst Biol , vol.46 , pp. 523-536
    • Maddison, W.P.1
  • 42
    • 78650414152 scopus 로고    scopus 로고
    • MacClade v. 4.0.8. Sinauer Assoc.
    • Maddison WP, Maddison DR (2005) MacClade v. 4.0.8. Sinauer Assoc.
    • (2005)
    • Maddison, W.P.1    Maddison, D.R.2
  • 44
    • 39149141072 scopus 로고    scopus 로고
    • AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics
    • Nylander J.A., Wilgenbusch J.C., Warren D.L., Swofford D.L. AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics. Bioinformatics 2008, 24:581-583.
    • (2008) Bioinformatics , vol.24 , pp. 581-583
    • Nylander, J.A.1    Wilgenbusch, J.C.2    Warren, D.L.3    Swofford, D.L.4
  • 46
    • 0033602474 scopus 로고    scopus 로고
    • Taxon sampling revisited
    • Poe S., Swofford D.L. Taxon sampling revisited. Nature 1999, 398:299-300.
    • (1999) Nature , vol.398 , pp. 299-300
    • Poe, S.1    Swofford, D.L.2
  • 47
    • 33745324718 scopus 로고    scopus 로고
    • Relationship of species of the Paramecium aurelia complex (Protozoa, ph. Ciliophora, cl. Oligohymenophorea) based on sequences of the histone H4 gene fragment
    • Przyboś E., Maciejewska A., Skotarczak B. Relationship of species of the Paramecium aurelia complex (Protozoa, ph. Ciliophora, cl. Oligohymenophorea) based on sequences of the histone H4 gene fragment. Folia Biol (Praha) 2006, 54:37-42.
    • (2006) Folia Biol (Praha) , vol.54 , pp. 37-42
    • Przyboś, E.1    Maciejewska, A.2    Skotarczak, B.3
  • 48
    • 78650415770 scopus 로고    scopus 로고
    • FigTree. Institute of Evolutionary Biology, Univ. of Edinburgh. Available at: .
    • Rambaut A (2006) FigTree. Institute of Evolutionary Biology, Univ. of Edinburgh. Available at: http://tree.bio.ed.ac.uk/software/figtree.
    • (2006)
    • Rambaut, A.1
  • 49
    • 0032225752 scopus 로고    scopus 로고
    • Taxon sampling and the accuracy of large phylogenies
    • Rannala B., Huelsenbeck J.P., Yang Z., Nielsen R. Taxon sampling and the accuracy of large phylogenies. Syst Biol 1998, 47:702-710.
    • (1998) Syst Biol , vol.47 , pp. 702-710
    • Rannala, B.1    Huelsenbeck, J.P.2    Yang, Z.3    Nielsen, R.4
  • 50
    • 0034916154 scopus 로고    scopus 로고
    • Widespread distribution of extensive genome fragmentation in ciliates
    • Riley J.L., Katz L.A. Widespread distribution of extensive genome fragmentation in ciliates. Mol Biol Evol 2001, 18:1372-1377.
    • (2001) Mol Biol Evol , vol.18 , pp. 1372-1377
    • Riley, J.L.1    Katz, L.A.2
  • 51
    • 17744398025 scopus 로고    scopus 로고
    • More genes or more taxa? The relative contribution of gene number and taxon number to phylogenetic accuracy
    • Rokas A., Carroll S.B. More genes or more taxa? The relative contribution of gene number and taxon number to phylogenetic accuracy. Mol Biol Evol 2005, 22:1337-1344.
    • (2005) Mol Biol Evol , vol.22 , pp. 1337-1344
    • Rokas, A.1    Carroll, S.B.2
  • 52
    • 0242365676 scopus 로고    scopus 로고
    • Genome-scale approaches to resolving incongruence in molecular phylogenies
    • Rokas A., Williams B.L., King N., Carroll S.B. Genome-scale approaches to resolving incongruence in molecular phylogenies. Nature 2003, 425:798-804.
    • (2003) Nature , vol.425 , pp. 798-804
    • Rokas, A.1    Williams, B.L.2    King, N.3    Carroll, S.B.4
  • 53
    • 34047166408 scopus 로고    scopus 로고
    • Phylogeny of the Stichotrichea (Ciliophora: Spirotrichea) reconstructed with nuclear small subunit rRNA gene sequences: discrepancies and accordances with morphological data
    • Schmidt S.L., Bernard D., Schlegel M., Foissner W. Phylogeny of the Stichotrichea (Ciliophora: Spirotrichea) reconstructed with nuclear small subunit rRNA gene sequences: discrepancies and accordances with morphological data. J Eukaryot Microbiol 2007, 54:201-209.
    • (2007) J Eukaryot Microbiol , vol.54 , pp. 201-209
    • Schmidt, S.L.1    Bernard, D.2    Schlegel, M.3    Foissner, W.4
  • 54
    • 34547456466 scopus 로고    scopus 로고
    • Molecular phylogeny of the Heterotrichea (Ciliophora, postciliodesmatophora) based on small subunit rRNA gene sequences
    • Schmidt S.L., Foissner W., Schlegel M., Bernhard D. Molecular phylogeny of the Heterotrichea (Ciliophora, postciliodesmatophora) based on small subunit rRNA gene sequences. J Eukaryot Microbiol 2007, 54:358-363.
    • (2007) J Eukaryot Microbiol , vol.54 , pp. 358-363
    • Schmidt, S.L.1    Foissner, W.2    Schlegel, M.3    Bernhard, D.4
  • 55
    • 0036623258 scopus 로고    scopus 로고
    • An approximately unbiased test of phylogenetic tree selection
    • Shimodaira H. An approximately unbiased test of phylogenetic tree selection. Syst Biol 2002, 51:492-508.
    • (2002) Syst Biol , vol.51 , pp. 492-508
    • Shimodaira, H.1
  • 56
    • 0036139287 scopus 로고    scopus 로고
    • CONSEL: for assessing the confidence of phylogenetic tree selection
    • Shimodaira H., Hasegawa M. CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics 2001, 17:1246-1247.
    • (2001) Bioinformatics , vol.17 , pp. 1246-1247
    • Shimodaira, H.1    Hasegawa, M.2
  • 57
    • 33750936273 scopus 로고    scopus 로고
    • Large global effective population sizes in Paramecium
    • Snoke M.S., Berendonk T.U., Barth D., Lynch M. Large global effective population sizes in Paramecium. Mol Biol Evol 2006, 23:2474-2479.
    • (2006) Mol Biol Evol , vol.23 , pp. 2474-2479
    • Snoke, M.S.1    Berendonk, T.U.2    Barth, D.3    Lynch, M.4
  • 58
    • 0022529386 scopus 로고
    • Primary structure of the Paramecium tetraurelia small-subunit rRNA coding region: phylogenetic relationships within the Ciliophora
    • Sogin M.L., Elwood H.J. Primary structure of the Paramecium tetraurelia small-subunit rRNA coding region: phylogenetic relationships within the Ciliophora. J Mol Evol 1986, 23:53-60.
    • (1986) J Mol Evol , vol.23 , pp. 53-60
    • Sogin, M.L.1    Elwood, H.J.2
  • 59
    • 50249100595 scopus 로고    scopus 로고
    • A fast boostrap algorithm for the RAxML web-servers
    • Stamatakis A., Hoover P., Rougemont J. A fast boostrap algorithm for the RAxML web-servers. Syst Biol 2008, 57:758-771.
    • (2008) Syst Biol , vol.57 , pp. 758-771
    • Stamatakis, A.1    Hoover, P.2    Rougemont, J.3
  • 60
    • 34848852037 scopus 로고    scopus 로고
    • Small-subunit rDNA phylogenies sugest that Epalxella antiquorum (Penard, 1922) Corliss, 1960 (Ciliophora, Odontostomatida) is a member of the Plagyopylea
    • Stoeck T., Foissner W., Lynn D.H. Small-subunit rDNA phylogenies sugest that Epalxella antiquorum (Penard, 1922) Corliss, 1960 (Ciliophora, Odontostomatida) is a member of the Plagyopylea. J Eukaryot Microbiol 2007, 54:436-442.
    • (2007) J Eukaryot Microbiol , vol.54 , pp. 436-442
    • Stoeck, T.1    Foissner, W.2    Lynn, D.H.3
  • 61
    • 33747126717 scopus 로고    scopus 로고
    • Molecular phylogeny of litostome ciliates (Ciliophora, Litostomatea) with emphasis on free-living haptorian genera
    • Strüder-Kypke M., Wright A-DG, Foissner W., Lynn D.H. Molecular phylogeny of litostome ciliates (Ciliophora, Litostomatea) with emphasis on free-living haptorian genera. Protist 2006, 157:261-278.
    • (2006) Protist , vol.157 , pp. 261-278
    • Strüder-Kypke, M.1    Wright, A.-D.G.2    Foissner, W.3    Lynn, D.H.4
  • 62
    • 17944386563 scopus 로고    scopus 로고
    • Sequence analyses of the small subunit rRNA gene confirm the paraphyly of oligotrich ciliates sensu lato and support the monophyly of the subclasses Oligotrichia and Choreotrichia (Ciliophora, Spirotrichea)
    • Strüder-Kypke M.C., Lynn D.H. Sequence analyses of the small subunit rRNA gene confirm the paraphyly of oligotrich ciliates sensu lato and support the monophyly of the subclasses Oligotrichia and Choreotrichia (Ciliophora, Spirotrichea). J Zool 2003, 260:87-97.
    • (2003) J Zool , vol.260 , pp. 87-97
    • Strüder-Kypke, M.C.1    Lynn, D.H.2
  • 63
    • 77954316382 scopus 로고    scopus 로고
    • Comparative analysis of the mitochondrial cytochrome c oxidase subunit 1 (CO1) gene in ciliates (Alveolata, Ciliophora) and evaluation of its suitability as a biodiversity marker
    • Strüder-Kypke M.C., Lynn D.H. Comparative analysis of the mitochondrial cytochrome c oxidase subunit 1 (CO1) gene in ciliates (Alveolata, Ciliophora) and evaluation of its suitability as a biodiversity marker. Syst Biodivers 2010, 8:131-148.
    • (2010) Syst Biodivers , vol.8 , pp. 131-148
    • Strüder-Kypke, M.C.1    Lynn, D.H.2
  • 64
    • 78650417691 scopus 로고    scopus 로고
    • PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Sinauer Assoc, Sunderland MA
    • Swofford D (2002) PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Sinauer Assoc, Sunderland MA.
    • (2002)
    • Swofford, D.1
  • 65
    • 34547489084 scopus 로고    scopus 로고
    • Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments
    • Talavera G., Castresana J. Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst Biol 2007, 56:564-577.
    • (2007) Syst Biol , vol.56 , pp. 564-577
    • Talavera, G.1    Castresana, J.2
  • 66
    • 0027968068 scopus 로고
    • Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., Gibson T.J. Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994, 22:4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 69
    • 34249943227 scopus 로고    scopus 로고
    • A molecular phylogenetic investigation of Opisthonecta and related genera (Ciliophora, Peritrichia, Sessilida)
    • Williams D., Clamp J.C. A molecular phylogenetic investigation of Opisthonecta and related genera (Ciliophora, Peritrichia, Sessilida). J Eukaryot Microbiol 2007, 54:317-323.
    • (2007) J Eukaryot Microbiol , vol.54 , pp. 317-323
    • Williams, D.1    Clamp, J.C.2
  • 70
    • 0031407579 scopus 로고    scopus 로고
    • Maximum ages of ciliate lineages estimated using a small subunit rRNA molecular clock: crown eukaryotes date back to the paleoprotoerozoic
    • Wright A.-D.G., Lynn D.H. Maximum ages of ciliate lineages estimated using a small subunit rRNA molecular clock: crown eukaryotes date back to the paleoprotoerozoic. Arch Protistenkd 1997, 148:329-341.
    • (1997) Arch Protistenkd , vol.148 , pp. 329-341
    • Wright, A.-D.G.1    Lynn, D.H.2
  • 71
    • 0036867680 scopus 로고    scopus 로고
    • Phylogenetic relationships amongst tetrahymenine ciliates inferred by a comparison of telomerase RNAs. Int J Syst Evol Microbiol
    • Ye AJ, Romero DP (2002) Phylogenetic relationships amongst tetrahymenine ciliates inferred by a comparison of telomerase RNAs. Int J Syst Evol Microbiol 52:2297-3202.
    • (2002) , vol.52 , pp. 2297-3202
    • Ye, A.J.1    Romero, D.P.2
  • 72
    • 38749095521 scopus 로고    scopus 로고
    • A molecular phylogenetic investigation of Pseudoamphisiellla and Parabirojima (Protozoa, Ciliophora, Spirotrichea), two genera with ambiguous systematic positions
    • Yi Z., Song W., Warren A., Roberts D.M., Al-Rasheid K.A.S., Chen Z., Al-Farraj S.A., Hu X. A molecular phylogenetic investigation of Pseudoamphisiellla and Parabirojima (Protozoa, Ciliophora, Spirotrichea), two genera with ambiguous systematic positions. Eur J Protistol 2008, 44:45-53.
    • (2008) Eur J Protistol , vol.44 , pp. 45-53
    • Yi, Z.1    Song, W.2    Warren, A.3    Roberts, D.M.4    Al-Rasheid, K.A.S.5    Chen, Z.6    Al-Farraj, S.A.7    Hu, X.8
  • 73
    • 34249947980 scopus 로고    scopus 로고
    • Micronuclear and macronuclear forms of β-tubulin genes in the ciliate Chilodonella uncinata reveal insights into genome processing and protein evolution
    • Zufall R.A., Katz L.A. Micronuclear and macronuclear forms of β-tubulin genes in the ciliate Chilodonella uncinata reveal insights into genome processing and protein evolution. J Eukaryot Microbiol 2007, 54:275-282.
    • (2007) J Eukaryot Microbiol , vol.54 , pp. 275-282
    • Zufall, R.A.1    Katz, L.A.2
  • 74
    • 33748136805 scopus 로고    scopus 로고
    • Genome architecture drives protein evolution in ciliates
    • Zufall R.A., McGrath C.L., Muse S.V., Katz L.A. Genome architecture drives protein evolution in ciliates. Mol Biol Evol 2006, 23:1681-1687.
    • (2006) Mol Biol Evol , vol.23 , pp. 1681-1687
    • Zufall, R.A.1    McGrath, C.L.2    Muse, S.V.3    Katz, L.A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.