메뉴 건너뛰기




Volumn 9, Issue 12, 2013, Pages 1-4

CRISPR-Cas Immunity against Phages: Its Effects on the Evolution and Survival of Bacterial Pathogens

Author keywords

[No Author keywords available]

Indexed keywords

LIPOPROTEIN; NUCLEASE; TOLL LIKE RECEPTOR 2; VIRULENCE FACTOR; CRISPR ASSOCIATED PROTEIN;

EID: 84892846048     PISSN: 15537366     EISSN: 15537374     Source Type: Journal    
DOI: 10.1371/journal.ppat.1003765     Document Type: Article
Times cited : (34)

References (47)
  • 1
    • 84857041376 scopus 로고    scopus 로고
    • Innate and adaptive immunity in bacteria: mechanisms of programmed genetic variation to fight bacteriophages
    • Bikard D, Marraffini LA, (2012) Innate and adaptive immunity in bacteria: mechanisms of programmed genetic variation to fight bacteriophages. Curr Opin Immunol 24: 15-20.
    • (2012) Curr Opin Immunol , vol.24 , pp. 15-20
    • Bikard, D.1    Marraffini, L.A.2
  • 2
    • 84870180587 scopus 로고    scopus 로고
    • The CRISPRs, they are a-changin': how prokaryotes generate adaptive immunity
    • Westra ER, Swarts DC, Staals RH, Jore MM, Brouns SJ, et al. (2012) The CRISPRs, they are a-changin': how prokaryotes generate adaptive immunity. Annu Rev Genet 46: 311-339.
    • (2012) Annu Rev Genet , vol.46 , pp. 311-339
    • Westra, E.R.1    Swarts, D.C.2    Staals, R.H.3    Jore, M.M.4    Brouns, S.J.5
  • 3
    • 84857097177 scopus 로고    scopus 로고
    • RNA-guided genetic silencing systems in bacteria and archaea
    • Wiedenheft B, Sternberg SH, Doudna JA, (2012) RNA-guided genetic silencing systems in bacteria and archaea. Nature 482: 331-338.
    • (2012) Nature , vol.482 , pp. 331-338
    • Wiedenheft, B.1    Sternberg, S.H.2    Doudna, J.A.3
  • 4
    • 34047118522 scopus 로고    scopus 로고
    • CRISPR provides acquired resistance against viruses in prokaryotes
    • Barrangou R, Fremaux C, Deveau H, Richards M, Boyaval P, et al. (2007) CRISPR provides acquired resistance against viruses in prokaryotes. Science 315: 1709-1712.
    • (2007) Science , vol.315 , pp. 1709-1712
    • Barrangou, R.1    Fremaux, C.2    Deveau, H.3    Richards, M.4    Boyaval, P.5
  • 5
    • 84868143545 scopus 로고    scopus 로고
    • The CRISPR/Cas adaptive immune system of Pseudomonas aeruginosa mediates resistance to naturally occurring and engineered phages
    • Cady KC, Bondy-Denomy J, Heussler GE, Davidson AR, O'Toole GA, (2012) The CRISPR/Cas adaptive immune system of Pseudomonas aeruginosa mediates resistance to naturally occurring and engineered phages. J Bacteriol 194: 5728-5738.
    • (2012) J Bacteriol , vol.194 , pp. 5728-5738
    • Cady, K.C.1    Bondy-Denomy, J.2    Heussler, G.E.3    Davidson, A.R.4    O'Toole, G.A.5
  • 7
    • 78149261827 scopus 로고    scopus 로고
    • The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA
    • Garneau JE, Dupuis ME, Villion M, Romero DA, Barrangou R, et al. (2010) The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA. Nature 468: 67-71.
    • (2010) Nature , vol.468 , pp. 67-71
    • Garneau, J.E.1    Dupuis, M.E.2    Villion, M.3    Romero, D.A.4    Barrangou, R.5
  • 8
    • 84864864464 scopus 로고    scopus 로고
    • Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system
    • Datsenko KA, Pougach K, Tikhonov A, Wanner BL, Severinov K, et al. (2012) Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system. Nat Commun 3: 945.
    • (2012) Nat Commun , vol.3 , pp. 945
    • Datsenko, K.A.1    Pougach, K.2    Tikhonov, A.3    Wanner, B.L.4    Severinov, K.5
  • 9
    • 84861639567 scopus 로고    scopus 로고
    • Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli
    • Yosef I, Goren MG, Qimron U, (2012) Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli. Nucleic Acids Res 40: 5569-5576.
    • (2012) Nucleic Acids Res , vol.40 , pp. 5569-5576
    • Yosef, I.1    Goren, M.G.2    Qimron, U.3
  • 10
    • 58049191229 scopus 로고    scopus 로고
    • Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes
    • Carte J, Wang R, Li H, Terns RM, Terns MP, (2008) Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes. Genes Dev 22: 3489-3496.
    • (2008) Genes Dev , vol.22 , pp. 3489-3496
    • Carte, J.1    Wang, R.2    Li, H.3    Terns, R.M.4    Terns, M.P.5
  • 11
    • 77956498326 scopus 로고    scopus 로고
    • Sequence- and structure-specific RNA processing by a CRISPR endonuclease
    • Haurwitz RE, Jinek M, Wiedenheft B, Zhou K, Doudna JA, (2010) Sequence- and structure-specific RNA processing by a CRISPR endonuclease. Science 329: 1355-1358.
    • (2010) Science , vol.329 , pp. 1355-1358
    • Haurwitz, R.E.1    Jinek, M.2    Wiedenheft, B.3    Zhou, K.4    Doudna, J.A.5
  • 12
    • 84865070369 scopus 로고    scopus 로고
    • A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
    • Jinek M, Chylinski K, Fonfara I, Hauer M, Doudna JA, et al. (2012) A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 337: 816-821.
    • (2012) Science , vol.337 , pp. 816-821
    • Jinek, M.1    Chylinski, K.2    Fonfara, I.3    Hauer, M.4    Doudna, J.A.5
  • 13
    • 84861996069 scopus 로고    scopus 로고
    • CRISPR immunity relies on the consecutive binding and degradation of negatively supercoiled invader DNA by Cascade and Cas3
    • Westra ER, van Erp PB, Kunne T, Wong SP, Staals RH, et al. (2012) CRISPR immunity relies on the consecutive binding and degradation of negatively supercoiled invader DNA by Cascade and Cas3. Mol Cell 46: 595-605.
    • (2012) Mol Cell , vol.46 , pp. 595-605
    • Westra, E.R.1    van Erp, P.B.2    Kunne, T.3    Wong, S.P.4    Staals, R.H.5
  • 14
    • 34250662138 scopus 로고    scopus 로고
    • The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats
    • Grissa I, Vergnaud G, Pourcel C, (2007) The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats. BMC Bioinformatics 8: 172.
    • (2007) BMC Bioinformatics , vol.8 , pp. 172
    • Grissa, I.1    Vergnaud, G.2    Pourcel, C.3
  • 15
    • 77954423847 scopus 로고    scopus 로고
    • Comparative network clustering of direct repeats (DRs) and cas genes confirms the possibility of the horizontal transfer of CRISPR locus among bacteria
    • Chakraborty S, Snijders AP, Chakravorty R, Ahmed M, Tarek AM, et al. (2010) Comparative network clustering of direct repeats (DRs) and cas genes confirms the possibility of the horizontal transfer of CRISPR locus among bacteria. Mol Phylogenet Evol 56: 878-887.
    • (2010) Mol Phylogenet Evol , vol.56 , pp. 878-887
    • Chakraborty, S.1    Snijders, A.P.2    Chakravorty, R.3    Ahmed, M.4    Tarek, A.M.5
  • 16
    • 33744941078 scopus 로고    scopus 로고
    • The repetitive DNA elements called CRISPRs and their associated genes: evidence of horizontal transfer among prokaryotes
    • Godde JS, Bickerton A, (2006) The repetitive DNA elements called CRISPRs and their associated genes: evidence of horizontal transfer among prokaryotes. J Mol Evol 62: 718-729.
    • (2006) J Mol Evol , vol.62 , pp. 718-729
    • Godde, J.S.1    Bickerton, A.2
  • 17
    • 84865144676 scopus 로고    scopus 로고
    • CRISPR interference can prevent natural transformation and virulence acquisition during in vivo bacterial infection
    • Bikard D, Hatoum-Aslan A, Mucida D, Marraffini LA, (2012) CRISPR interference can prevent natural transformation and virulence acquisition during in vivo bacterial infection. Cell Host Microbe 12: 177-186.
    • (2012) Cell Host Microbe , vol.12 , pp. 177-186
    • Bikard, D.1    Hatoum-Aslan, A.2    Mucida, D.3    Marraffini, L.A.4
  • 18
    • 84866951828 scopus 로고    scopus 로고
    • An archaeal immune system can detect multiple Protospacer Adjacent Motifs (PAMs) to target invader DNA
    • Fischer S, Maier LK, Stoll B, Brendel J, Fischer E, et al. (2012) An archaeal immune system can detect multiple Protospacer Adjacent Motifs (PAMs) to target invader DNA. J Biol Chem 287: 33351-33363.
    • (2012) J Biol Chem , vol.287 , pp. 33351-33363
    • Fischer, S.1    Maier, L.K.2    Stoll, B.3    Brendel, J.4    Fischer, E.5
  • 19
    • 78650244167 scopus 로고    scopus 로고
    • Dynamic properties of the Sulfolobus CRISPR/Cas and CRISPR/Cmr systems when challenged with vector-borne viral and plasmid genes and protospacers
    • Gudbergsdottir S, Deng L, Chen Z, Jensen JV, Jensen LR, et al. (2011) Dynamic properties of the Sulfolobus CRISPR/Cas and CRISPR/Cmr systems when challenged with vector-borne viral and plasmid genes and protospacers. Mol Microbiol 79: 35-49.
    • (2011) Mol Microbiol , vol.79 , pp. 35-49
    • Gudbergsdottir, S.1    Deng, L.2    Chen, Z.3    Jensen, J.V.4    Jensen, L.R.5
  • 20
    • 84884696268 scopus 로고    scopus 로고
    • Dealing with the evolutionary downside of CRISPR immunity: bacteria and beneficial plasmids
    • doi:10.1371/journal.pgen.1003844
    • Jiang W, Maniv I, Arain F, Wang Y, Levin BR, et al. (2013) Dealing with the evolutionary downside of CRISPR immunity: bacteria and beneficial plasmids. PLoS Genet 9: e1003844 doi:10.1371/journal.pgen.1003844.
    • (2013) PLoS Genet , vol.9
    • Jiang, W.1    Maniv, I.2    Arain, F.3    Wang, Y.4    Levin, B.R.5
  • 21
    • 83755194968 scopus 로고    scopus 로고
    • CRISPR loci reveal networks of gene exchange in archaea
    • Brodt A, Lurie-Weinberger MN, Gophna U, (2011) CRISPR loci reveal networks of gene exchange in archaea. Biol Direct 6: 65.
    • (2011) Biol Direct , vol.6 , pp. 65
    • Brodt, A.1    Lurie-Weinberger, M.N.2    Gophna, U.3
  • 23
    • 77955085897 scopus 로고    scopus 로고
    • Self-targeting by CRISPR: gene regulation or autoimmunity?
    • Stern A, Keren L, Wurtzel O, Amitai G, Sorek R, (2010) Self-targeting by CRISPR: gene regulation or autoimmunity? Trends Genet 26: 335-340.
    • (2010) Trends Genet , vol.26 , pp. 335-340
    • Stern, A.1    Keren, L.2    Wurtzel, O.3    Amitai, G.4    Sorek, R.5
  • 24
    • 23944475626 scopus 로고    scopus 로고
    • Mechanisms of, and barriers to, horizontal gene transfer between bacteria
    • Thomas CM, Nielsen KM, (2005) Mechanisms of, and barriers to, horizontal gene transfer between bacteria. Nat Rev Microbiol 3: 711-721.
    • (2005) Nat Rev Microbiol , vol.3 , pp. 711-721
    • Thomas, C.M.1    Nielsen, K.M.2
  • 25
    • 84866023604 scopus 로고    scopus 로고
    • Selective and hyperactive uptake of foreign DNA by adaptive immune systems of an archaeon via two distinct mechanisms
    • Erdmann S, Garrett RA, (2012) Selective and hyperactive uptake of foreign DNA by adaptive immune systems of an archaeon via two distinct mechanisms. Mol Microbiol 85: 1044-1056.
    • (2012) Mol Microbiol , vol.85 , pp. 1044-1056
    • Erdmann, S.1    Garrett, R.A.2
  • 26
    • 57849137502 scopus 로고    scopus 로고
    • CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA
    • Marraffini LA, Sontheimer EJ, (2008) CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA. Science 322: 1843-1845.
    • (2008) Science , vol.322 , pp. 1843-1845
    • Marraffini, L.A.1    Sontheimer, E.J.2
  • 27
    • 84866043524 scopus 로고    scopus 로고
    • The highly dynamic CRISPR1 system of Streptococcus agalactiae controls the diversity of its mobilome
    • Lopez-Sanchez MJ, Sauvage E, Da Cunha V, Clermont D, Ratsima Hariniaina E, et al. (2012) The highly dynamic CRISPR1 system of Streptococcus agalactiae controls the diversity of its mobilome. Mol Microbiol 85: 1057-1071.
    • (2012) Mol Microbiol , vol.85 , pp. 1057-1071
    • Lopez-Sanchez, M.J.1    Sauvage, E.2    Da Cunha, V.3    Clermont, D.4    Ratsima Hariniaina, E.5
  • 28
    • 84878193178 scopus 로고    scopus 로고
    • Processing-Independent CRISPR RNAs Limit Natural Transformation in Neisseria meningitidis
    • Zhang Y, Heidrich N, Ampattu BJ, Gunderson CW, Seifert HS, et al. (2013) Processing-Independent CRISPR RNAs Limit Natural Transformation in Neisseria meningitidis. Mol Cell 50: 488-503.
    • (2013) Mol Cell , vol.50 , pp. 488-503
    • Zhang, Y.1    Heidrich, N.2    Ampattu, B.J.3    Gunderson, C.W.4    Seifert, H.S.5
  • 29
    • 79251544864 scopus 로고    scopus 로고
    • Rapid pneumococcal evolution in response to clinical interventions
    • Croucher NJ, Harris SR, Fraser C, Quail MA, Burton J, et al. (2011) Rapid pneumococcal evolution in response to clinical interventions. Science 331: 430-434.
    • (2011) Science , vol.331 , pp. 430-434
    • Croucher, N.J.1    Harris, S.R.2    Fraser, C.3    Quail, M.A.4    Burton, J.5
  • 30
    • 0344827209 scopus 로고    scopus 로고
    • Genetic analysis of a high-level vancomycin-resistant isolate of Staphylococcus aureus
    • Weigel LM, Clewell DB, Gill SR, Clark NC, McDougal LK, et al. (2003) Genetic analysis of a high-level vancomycin-resistant isolate of Staphylococcus aureus. Science 302: 1569-1571.
    • (2003) Science , vol.302 , pp. 1569-1571
    • Weigel, L.M.1    Clewell, D.B.2    Gill, S.R.3    Clark, N.C.4    McDougal, L.K.5
  • 31
    • 0037381631 scopus 로고    scopus 로고
    • Molecular basis of group A streptococcal virulence
    • Bisno AL, Brito MO, Collins CM, (2003) Molecular basis of group A streptococcal virulence. Lancet Infect Dis 3: 191-200.
    • (2003) Lancet Infect Dis , vol.3 , pp. 191-200
    • Bisno, A.L.1    Brito, M.O.2    Collins, C.M.3
  • 32
    • 79955795335 scopus 로고    scopus 로고
    • CRISPR inhibition of prophage acquisition in Streptococcus pyogenes
    • doi:10.1371/journal.pone.0019543
    • Nozawa T, Furukawa N, Aikawa C, Watanabe T, Haobam B, et al. (2011) CRISPR inhibition of prophage acquisition in Streptococcus pyogenes. PLoS ONE 6: e19543 doi:10.1371/journal.pone.0019543.
    • (2011) PLoS ONE , vol.6
    • Nozawa, T.1    Furukawa, N.2    Aikawa, C.3    Watanabe, T.4    Haobam, B.5
  • 33
    • 31344459549 scopus 로고    scopus 로고
    • Antimicrobial-resistant bacteria in the community setting
    • Furuya EY, Lowy FD, (2006) Antimicrobial-resistant bacteria in the community setting. Nat Rev Microbiol 4: 36-45.
    • (2006) Nat Rev Microbiol , vol.4 , pp. 36-45
    • Furuya, E.Y.1    Lowy, F.D.2
  • 34
    • 20144372744 scopus 로고    scopus 로고
    • Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain
    • Gill SR, Fouts DE, Archer GL, Mongodin EF, Deboy RT, et al. (2005) Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain. J Bacteriol 187: 2426-2438.
    • (2005) J Bacteriol , vol.187 , pp. 2426-2438
    • Gill, S.R.1    Fouts, D.E.2    Archer, G.L.3    Mongodin, E.F.4    Deboy, R.T.5
  • 35
    • 84870357797 scopus 로고    scopus 로고
    • Antibiotic resistance plasmids spread among natural isolates of Escherichia coli in spite of CRISPR elements
    • Touchon M, Charpentier S, Pognard D, Picard B, Arlet G, et al. (2012) Antibiotic resistance plasmids spread among natural isolates of Escherichia coli in spite of CRISPR elements. Microbiology 158: 2997-3004.
    • (2012) Microbiology , vol.158 , pp. 2997-3004
    • Touchon, M.1    Charpentier, S.2    Pognard, D.3    Picard, B.4    Arlet, G.5
  • 36
    • 77950634977 scopus 로고    scopus 로고
    • Livestock-associated methicillin-resistant Staphylococcus aureus sequence type 398 in humans, Canada
    • Golding GR, Bryden L, Levett PN, McDonald RR, Wong A, et al. (2010) Livestock-associated methicillin-resistant Staphylococcus aureus sequence type 398 in humans, Canada. Emerg Infect Dis 16: 587-594.
    • (2010) Emerg Infect Dis , vol.16 , pp. 587-594
    • Golding, G.R.1    Bryden, L.2    Levett, P.N.3    McDonald, R.R.4    Wong, A.5
  • 37
    • 84855753946 scopus 로고    scopus 로고
    • A very early-branching Staphylococcus aureus lineage lacking the carotenoid pigment staphyloxanthin
    • Holt DC, Holden MT, Tong SY, Castillo-Ramirez S, Clarke L, et al. (2011) A very early-branching Staphylococcus aureus lineage lacking the carotenoid pigment staphyloxanthin. Genome Biol Evol 3: 881-895.
    • (2011) Genome Biol Evol , vol.3 , pp. 881-895
    • Holt, D.C.1    Holden, M.T.2    Tong, S.Y.3    Castillo-Ramirez, S.4    Clarke, L.5
  • 38
    • 79952168979 scopus 로고    scopus 로고
    • Multidrug-resistant enterococci lack CRISPR-cas
    • Palmer KL, Gilmore MS, (2010) Multidrug-resistant enterococci lack CRISPR-cas. mBio 1: e00227-00210.
    • (2010) MBio , vol.1
    • Palmer, K.L.1    Gilmore, M.S.2
  • 39
    • 84920056771 scopus 로고
    • The significance of pneumococcal types
    • Griffith F, (1928) The significance of pneumococcal types. J Hyg 27: 113-159.
    • (1928) J Hyg , vol.27 , pp. 113-159
    • Griffith, F.1
  • 40
    • 84880074536 scopus 로고    scopus 로고
    • The CRISPR-associated gene cas2 of Legionella pneumophila is required for intracellular infection of amoebae
    • Gunderson FF, Cianciotto NP, (2013) The CRISPR-associated gene cas2 of Legionella pneumophila is required for intracellular infection of amoebae. mBio 4: e00074-00013.
    • (2013) MBio , vol.4
    • Gunderson, F.F.1    Cianciotto, N.P.2
  • 41
    • 79953250082 scopus 로고    scopus 로고
    • CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III
    • Deltcheva E, Chylinski K, Sharma CM, Gonzales K, Chao Y, et al. (2011) CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III. Nature 471: 602-607.
    • (2011) Nature , vol.471 , pp. 602-607
    • Deltcheva, E.1    Chylinski, K.2    Sharma, C.M.3    Gonzales, K.4    Chao, Y.5
  • 42
    • 84874608929 scopus 로고    scopus 로고
    • RNA-guided editing of bacterial genomes using CRISPR-Cas systems
    • Jiang W, Bikard D, Cox D, Zhang F, Marraffini LA, (2013) RNA-guided editing of bacterial genomes using CRISPR-Cas systems. Nat Biotechnol 31: 233-239.
    • (2013) Nat Biotechnol , vol.31 , pp. 233-239
    • Jiang, W.1    Bikard, D.2    Cox, D.3    Zhang, F.4    Marraffini, L.A.5
  • 43
    • 84866340552 scopus 로고    scopus 로고
    • Repression of bacterial lipoprotein production by Francisella novicida facilitates evasion of innate immune recognition
    • Jones CL, Sampson TR, Nakaya HI, Pulendran B, Weiss DS, (2012) Repression of bacterial lipoprotein production by Francisella novicida facilitates evasion of innate immune recognition. Cell Microbiol 14: 1531-1543.
    • (2012) Cell Microbiol , vol.14 , pp. 1531-1543
    • Jones, C.L.1    Sampson, T.R.2    Nakaya, H.I.3    Pulendran, B.4    Weiss, D.S.5
  • 44
    • 84877782955 scopus 로고    scopus 로고
    • A CRISPR/Cas system mediates bacterial innate immune evasion and virulence
    • Sampson TR, Saroj SD, Llewellyn AC, Tzeng YL, Weiss DS, (2013) A CRISPR/Cas system mediates bacterial innate immune evasion and virulence. Nature 497: 254-257.
    • (2013) Nature , vol.497 , pp. 254-257
    • Sampson, T.R.1    Saroj, S.D.2    Llewellyn, A.C.3    Tzeng, Y.L.4    Weiss, D.S.5
  • 45
    • 84884149580 scopus 로고    scopus 로고
    • Corrigendum: a CRISPR/Cas system mediates bacterial innate immune evasion and virulence
    • Sampson TR, Saroj SD, Llewellyn AC, Tzeng YL, Weiss DS, (2013) Corrigendum: a CRISPR/Cas system mediates bacterial innate immune evasion and virulence. Nature 501: 262.
    • (2013) Nature , vol.501 , pp. 262
    • Sampson, T.R.1    Saroj, S.D.2    Llewellyn, A.C.3    Tzeng, Y.L.4    Weiss, D.S.5
  • 47
    • 84872607723 scopus 로고    scopus 로고
    • Bacteriophage genes that inactivate the CRISPR/Cas bacterial immune system
    • Bondy-Denomy J, Pawluk A, Maxwell KL, Davidson AR, (2013) Bacteriophage genes that inactivate the CRISPR/Cas bacterial immune system. Nature 493: 429-432.
    • (2013) Nature , vol.493 , pp. 429-432
    • Bondy-Denomy, J.1    Pawluk, A.2    Maxwell, K.L.3    Davidson, A.R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.