-
1
-
-
84857041376
-
Innate and adaptive immunity in bacteria: mechanisms of programmed genetic variation to fight bacteriophages
-
Bikard D, Marraffini LA, (2012) Innate and adaptive immunity in bacteria: mechanisms of programmed genetic variation to fight bacteriophages. Curr Opin Immunol 24: 15-20.
-
(2012)
Curr Opin Immunol
, vol.24
, pp. 15-20
-
-
Bikard, D.1
Marraffini, L.A.2
-
2
-
-
84870180587
-
The CRISPRs, they are a-changin': how prokaryotes generate adaptive immunity
-
Westra ER, Swarts DC, Staals RH, Jore MM, Brouns SJ, et al. (2012) The CRISPRs, they are a-changin': how prokaryotes generate adaptive immunity. Annu Rev Genet 46: 311-339.
-
(2012)
Annu Rev Genet
, vol.46
, pp. 311-339
-
-
Westra, E.R.1
Swarts, D.C.2
Staals, R.H.3
Jore, M.M.4
Brouns, S.J.5
-
3
-
-
84857097177
-
RNA-guided genetic silencing systems in bacteria and archaea
-
Wiedenheft B, Sternberg SH, Doudna JA, (2012) RNA-guided genetic silencing systems in bacteria and archaea. Nature 482: 331-338.
-
(2012)
Nature
, vol.482
, pp. 331-338
-
-
Wiedenheft, B.1
Sternberg, S.H.2
Doudna, J.A.3
-
4
-
-
34047118522
-
CRISPR provides acquired resistance against viruses in prokaryotes
-
Barrangou R, Fremaux C, Deveau H, Richards M, Boyaval P, et al. (2007) CRISPR provides acquired resistance against viruses in prokaryotes. Science 315: 1709-1712.
-
(2007)
Science
, vol.315
, pp. 1709-1712
-
-
Barrangou, R.1
Fremaux, C.2
Deveau, H.3
Richards, M.4
Boyaval, P.5
-
5
-
-
84868143545
-
The CRISPR/Cas adaptive immune system of Pseudomonas aeruginosa mediates resistance to naturally occurring and engineered phages
-
Cady KC, Bondy-Denomy J, Heussler GE, Davidson AR, O'Toole GA, (2012) The CRISPR/Cas adaptive immune system of Pseudomonas aeruginosa mediates resistance to naturally occurring and engineered phages. J Bacteriol 194: 5728-5738.
-
(2012)
J Bacteriol
, vol.194
, pp. 5728-5738
-
-
Cady, K.C.1
Bondy-Denomy, J.2
Heussler, G.E.3
Davidson, A.R.4
O'Toole, G.A.5
-
6
-
-
49649114086
-
Small CRISPR RNAs guide antiviral defense in prokaryotes
-
Brouns SJ, Jore MM, Lundgren M, Westra ER, Slijkhuis RJ, et al. (2008) Small CRISPR RNAs guide antiviral defense in prokaryotes. Science 321: 960-964.
-
(2008)
Science
, vol.321
, pp. 960-964
-
-
Brouns, S.J.1
Jore, M.M.2
Lundgren, M.3
Westra, E.R.4
Slijkhuis, R.J.5
-
7
-
-
78149261827
-
The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA
-
Garneau JE, Dupuis ME, Villion M, Romero DA, Barrangou R, et al. (2010) The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA. Nature 468: 67-71.
-
(2010)
Nature
, vol.468
, pp. 67-71
-
-
Garneau, J.E.1
Dupuis, M.E.2
Villion, M.3
Romero, D.A.4
Barrangou, R.5
-
8
-
-
84864864464
-
Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system
-
Datsenko KA, Pougach K, Tikhonov A, Wanner BL, Severinov K, et al. (2012) Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system. Nat Commun 3: 945.
-
(2012)
Nat Commun
, vol.3
, pp. 945
-
-
Datsenko, K.A.1
Pougach, K.2
Tikhonov, A.3
Wanner, B.L.4
Severinov, K.5
-
9
-
-
84861639567
-
Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli
-
Yosef I, Goren MG, Qimron U, (2012) Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli. Nucleic Acids Res 40: 5569-5576.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 5569-5576
-
-
Yosef, I.1
Goren, M.G.2
Qimron, U.3
-
10
-
-
58049191229
-
Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes
-
Carte J, Wang R, Li H, Terns RM, Terns MP, (2008) Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes. Genes Dev 22: 3489-3496.
-
(2008)
Genes Dev
, vol.22
, pp. 3489-3496
-
-
Carte, J.1
Wang, R.2
Li, H.3
Terns, R.M.4
Terns, M.P.5
-
11
-
-
77956498326
-
Sequence- and structure-specific RNA processing by a CRISPR endonuclease
-
Haurwitz RE, Jinek M, Wiedenheft B, Zhou K, Doudna JA, (2010) Sequence- and structure-specific RNA processing by a CRISPR endonuclease. Science 329: 1355-1358.
-
(2010)
Science
, vol.329
, pp. 1355-1358
-
-
Haurwitz, R.E.1
Jinek, M.2
Wiedenheft, B.3
Zhou, K.4
Doudna, J.A.5
-
12
-
-
84865070369
-
A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
-
Jinek M, Chylinski K, Fonfara I, Hauer M, Doudna JA, et al. (2012) A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 337: 816-821.
-
(2012)
Science
, vol.337
, pp. 816-821
-
-
Jinek, M.1
Chylinski, K.2
Fonfara, I.3
Hauer, M.4
Doudna, J.A.5
-
13
-
-
84861996069
-
CRISPR immunity relies on the consecutive binding and degradation of negatively supercoiled invader DNA by Cascade and Cas3
-
Westra ER, van Erp PB, Kunne T, Wong SP, Staals RH, et al. (2012) CRISPR immunity relies on the consecutive binding and degradation of negatively supercoiled invader DNA by Cascade and Cas3. Mol Cell 46: 595-605.
-
(2012)
Mol Cell
, vol.46
, pp. 595-605
-
-
Westra, E.R.1
van Erp, P.B.2
Kunne, T.3
Wong, S.P.4
Staals, R.H.5
-
14
-
-
34250662138
-
The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats
-
Grissa I, Vergnaud G, Pourcel C, (2007) The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats. BMC Bioinformatics 8: 172.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 172
-
-
Grissa, I.1
Vergnaud, G.2
Pourcel, C.3
-
15
-
-
77954423847
-
Comparative network clustering of direct repeats (DRs) and cas genes confirms the possibility of the horizontal transfer of CRISPR locus among bacteria
-
Chakraborty S, Snijders AP, Chakravorty R, Ahmed M, Tarek AM, et al. (2010) Comparative network clustering of direct repeats (DRs) and cas genes confirms the possibility of the horizontal transfer of CRISPR locus among bacteria. Mol Phylogenet Evol 56: 878-887.
-
(2010)
Mol Phylogenet Evol
, vol.56
, pp. 878-887
-
-
Chakraborty, S.1
Snijders, A.P.2
Chakravorty, R.3
Ahmed, M.4
Tarek, A.M.5
-
16
-
-
33744941078
-
The repetitive DNA elements called CRISPRs and their associated genes: evidence of horizontal transfer among prokaryotes
-
Godde JS, Bickerton A, (2006) The repetitive DNA elements called CRISPRs and their associated genes: evidence of horizontal transfer among prokaryotes. J Mol Evol 62: 718-729.
-
(2006)
J Mol Evol
, vol.62
, pp. 718-729
-
-
Godde, J.S.1
Bickerton, A.2
-
17
-
-
84865144676
-
CRISPR interference can prevent natural transformation and virulence acquisition during in vivo bacterial infection
-
Bikard D, Hatoum-Aslan A, Mucida D, Marraffini LA, (2012) CRISPR interference can prevent natural transformation and virulence acquisition during in vivo bacterial infection. Cell Host Microbe 12: 177-186.
-
(2012)
Cell Host Microbe
, vol.12
, pp. 177-186
-
-
Bikard, D.1
Hatoum-Aslan, A.2
Mucida, D.3
Marraffini, L.A.4
-
18
-
-
84866951828
-
An archaeal immune system can detect multiple Protospacer Adjacent Motifs (PAMs) to target invader DNA
-
Fischer S, Maier LK, Stoll B, Brendel J, Fischer E, et al. (2012) An archaeal immune system can detect multiple Protospacer Adjacent Motifs (PAMs) to target invader DNA. J Biol Chem 287: 33351-33363.
-
(2012)
J Biol Chem
, vol.287
, pp. 33351-33363
-
-
Fischer, S.1
Maier, L.K.2
Stoll, B.3
Brendel, J.4
Fischer, E.5
-
19
-
-
78650244167
-
Dynamic properties of the Sulfolobus CRISPR/Cas and CRISPR/Cmr systems when challenged with vector-borne viral and plasmid genes and protospacers
-
Gudbergsdottir S, Deng L, Chen Z, Jensen JV, Jensen LR, et al. (2011) Dynamic properties of the Sulfolobus CRISPR/Cas and CRISPR/Cmr systems when challenged with vector-borne viral and plasmid genes and protospacers. Mol Microbiol 79: 35-49.
-
(2011)
Mol Microbiol
, vol.79
, pp. 35-49
-
-
Gudbergsdottir, S.1
Deng, L.2
Chen, Z.3
Jensen, J.V.4
Jensen, L.R.5
-
20
-
-
84884696268
-
Dealing with the evolutionary downside of CRISPR immunity: bacteria and beneficial plasmids
-
doi:10.1371/journal.pgen.1003844
-
Jiang W, Maniv I, Arain F, Wang Y, Levin BR, et al. (2013) Dealing with the evolutionary downside of CRISPR immunity: bacteria and beneficial plasmids. PLoS Genet 9: e1003844 doi:10.1371/journal.pgen.1003844.
-
(2013)
PLoS Genet
, vol.9
-
-
Jiang, W.1
Maniv, I.2
Arain, F.3
Wang, Y.4
Levin, B.R.5
-
22
-
-
64449088715
-
Comparative analysis of CRISPR loci in lactic acid bacteria genomes
-
Horvath P, Coute-Monvoisin AC, Romero DA, Boyaval P, Fremaux C, et al. (2009) Comparative analysis of CRISPR loci in lactic acid bacteria genomes. Int J Food Microbiol 131: 62-70.
-
(2009)
Int J Food Microbiol
, vol.131
, pp. 62-70
-
-
Horvath, P.1
Coute-Monvoisin, A.C.2
Romero, D.A.3
Boyaval, P.4
Fremaux, C.5
-
23
-
-
77955085897
-
Self-targeting by CRISPR: gene regulation or autoimmunity?
-
Stern A, Keren L, Wurtzel O, Amitai G, Sorek R, (2010) Self-targeting by CRISPR: gene regulation or autoimmunity? Trends Genet 26: 335-340.
-
(2010)
Trends Genet
, vol.26
, pp. 335-340
-
-
Stern, A.1
Keren, L.2
Wurtzel, O.3
Amitai, G.4
Sorek, R.5
-
24
-
-
23944475626
-
Mechanisms of, and barriers to, horizontal gene transfer between bacteria
-
Thomas CM, Nielsen KM, (2005) Mechanisms of, and barriers to, horizontal gene transfer between bacteria. Nat Rev Microbiol 3: 711-721.
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 711-721
-
-
Thomas, C.M.1
Nielsen, K.M.2
-
25
-
-
84866023604
-
Selective and hyperactive uptake of foreign DNA by adaptive immune systems of an archaeon via two distinct mechanisms
-
Erdmann S, Garrett RA, (2012) Selective and hyperactive uptake of foreign DNA by adaptive immune systems of an archaeon via two distinct mechanisms. Mol Microbiol 85: 1044-1056.
-
(2012)
Mol Microbiol
, vol.85
, pp. 1044-1056
-
-
Erdmann, S.1
Garrett, R.A.2
-
26
-
-
57849137502
-
CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA
-
Marraffini LA, Sontheimer EJ, (2008) CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA. Science 322: 1843-1845.
-
(2008)
Science
, vol.322
, pp. 1843-1845
-
-
Marraffini, L.A.1
Sontheimer, E.J.2
-
27
-
-
84866043524
-
The highly dynamic CRISPR1 system of Streptococcus agalactiae controls the diversity of its mobilome
-
Lopez-Sanchez MJ, Sauvage E, Da Cunha V, Clermont D, Ratsima Hariniaina E, et al. (2012) The highly dynamic CRISPR1 system of Streptococcus agalactiae controls the diversity of its mobilome. Mol Microbiol 85: 1057-1071.
-
(2012)
Mol Microbiol
, vol.85
, pp. 1057-1071
-
-
Lopez-Sanchez, M.J.1
Sauvage, E.2
Da Cunha, V.3
Clermont, D.4
Ratsima Hariniaina, E.5
-
28
-
-
84878193178
-
Processing-Independent CRISPR RNAs Limit Natural Transformation in Neisseria meningitidis
-
Zhang Y, Heidrich N, Ampattu BJ, Gunderson CW, Seifert HS, et al. (2013) Processing-Independent CRISPR RNAs Limit Natural Transformation in Neisseria meningitidis. Mol Cell 50: 488-503.
-
(2013)
Mol Cell
, vol.50
, pp. 488-503
-
-
Zhang, Y.1
Heidrich, N.2
Ampattu, B.J.3
Gunderson, C.W.4
Seifert, H.S.5
-
29
-
-
79251544864
-
Rapid pneumococcal evolution in response to clinical interventions
-
Croucher NJ, Harris SR, Fraser C, Quail MA, Burton J, et al. (2011) Rapid pneumococcal evolution in response to clinical interventions. Science 331: 430-434.
-
(2011)
Science
, vol.331
, pp. 430-434
-
-
Croucher, N.J.1
Harris, S.R.2
Fraser, C.3
Quail, M.A.4
Burton, J.5
-
30
-
-
0344827209
-
Genetic analysis of a high-level vancomycin-resistant isolate of Staphylococcus aureus
-
Weigel LM, Clewell DB, Gill SR, Clark NC, McDougal LK, et al. (2003) Genetic analysis of a high-level vancomycin-resistant isolate of Staphylococcus aureus. Science 302: 1569-1571.
-
(2003)
Science
, vol.302
, pp. 1569-1571
-
-
Weigel, L.M.1
Clewell, D.B.2
Gill, S.R.3
Clark, N.C.4
McDougal, L.K.5
-
32
-
-
79955795335
-
CRISPR inhibition of prophage acquisition in Streptococcus pyogenes
-
doi:10.1371/journal.pone.0019543
-
Nozawa T, Furukawa N, Aikawa C, Watanabe T, Haobam B, et al. (2011) CRISPR inhibition of prophage acquisition in Streptococcus pyogenes. PLoS ONE 6: e19543 doi:10.1371/journal.pone.0019543.
-
(2011)
PLoS ONE
, vol.6
-
-
Nozawa, T.1
Furukawa, N.2
Aikawa, C.3
Watanabe, T.4
Haobam, B.5
-
33
-
-
31344459549
-
Antimicrobial-resistant bacteria in the community setting
-
Furuya EY, Lowy FD, (2006) Antimicrobial-resistant bacteria in the community setting. Nat Rev Microbiol 4: 36-45.
-
(2006)
Nat Rev Microbiol
, vol.4
, pp. 36-45
-
-
Furuya, E.Y.1
Lowy, F.D.2
-
34
-
-
20144372744
-
Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain
-
Gill SR, Fouts DE, Archer GL, Mongodin EF, Deboy RT, et al. (2005) Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain. J Bacteriol 187: 2426-2438.
-
(2005)
J Bacteriol
, vol.187
, pp. 2426-2438
-
-
Gill, S.R.1
Fouts, D.E.2
Archer, G.L.3
Mongodin, E.F.4
Deboy, R.T.5
-
35
-
-
84870357797
-
Antibiotic resistance plasmids spread among natural isolates of Escherichia coli in spite of CRISPR elements
-
Touchon M, Charpentier S, Pognard D, Picard B, Arlet G, et al. (2012) Antibiotic resistance plasmids spread among natural isolates of Escherichia coli in spite of CRISPR elements. Microbiology 158: 2997-3004.
-
(2012)
Microbiology
, vol.158
, pp. 2997-3004
-
-
Touchon, M.1
Charpentier, S.2
Pognard, D.3
Picard, B.4
Arlet, G.5
-
36
-
-
77950634977
-
Livestock-associated methicillin-resistant Staphylococcus aureus sequence type 398 in humans, Canada
-
Golding GR, Bryden L, Levett PN, McDonald RR, Wong A, et al. (2010) Livestock-associated methicillin-resistant Staphylococcus aureus sequence type 398 in humans, Canada. Emerg Infect Dis 16: 587-594.
-
(2010)
Emerg Infect Dis
, vol.16
, pp. 587-594
-
-
Golding, G.R.1
Bryden, L.2
Levett, P.N.3
McDonald, R.R.4
Wong, A.5
-
37
-
-
84855753946
-
A very early-branching Staphylococcus aureus lineage lacking the carotenoid pigment staphyloxanthin
-
Holt DC, Holden MT, Tong SY, Castillo-Ramirez S, Clarke L, et al. (2011) A very early-branching Staphylococcus aureus lineage lacking the carotenoid pigment staphyloxanthin. Genome Biol Evol 3: 881-895.
-
(2011)
Genome Biol Evol
, vol.3
, pp. 881-895
-
-
Holt, D.C.1
Holden, M.T.2
Tong, S.Y.3
Castillo-Ramirez, S.4
Clarke, L.5
-
38
-
-
79952168979
-
Multidrug-resistant enterococci lack CRISPR-cas
-
Palmer KL, Gilmore MS, (2010) Multidrug-resistant enterococci lack CRISPR-cas. mBio 1: e00227-00210.
-
(2010)
MBio
, vol.1
-
-
Palmer, K.L.1
Gilmore, M.S.2
-
39
-
-
84920056771
-
The significance of pneumococcal types
-
Griffith F, (1928) The significance of pneumococcal types. J Hyg 27: 113-159.
-
(1928)
J Hyg
, vol.27
, pp. 113-159
-
-
Griffith, F.1
-
40
-
-
84880074536
-
The CRISPR-associated gene cas2 of Legionella pneumophila is required for intracellular infection of amoebae
-
Gunderson FF, Cianciotto NP, (2013) The CRISPR-associated gene cas2 of Legionella pneumophila is required for intracellular infection of amoebae. mBio 4: e00074-00013.
-
(2013)
MBio
, vol.4
-
-
Gunderson, F.F.1
Cianciotto, N.P.2
-
41
-
-
79953250082
-
CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III
-
Deltcheva E, Chylinski K, Sharma CM, Gonzales K, Chao Y, et al. (2011) CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III. Nature 471: 602-607.
-
(2011)
Nature
, vol.471
, pp. 602-607
-
-
Deltcheva, E.1
Chylinski, K.2
Sharma, C.M.3
Gonzales, K.4
Chao, Y.5
-
42
-
-
84874608929
-
RNA-guided editing of bacterial genomes using CRISPR-Cas systems
-
Jiang W, Bikard D, Cox D, Zhang F, Marraffini LA, (2013) RNA-guided editing of bacterial genomes using CRISPR-Cas systems. Nat Biotechnol 31: 233-239.
-
(2013)
Nat Biotechnol
, vol.31
, pp. 233-239
-
-
Jiang, W.1
Bikard, D.2
Cox, D.3
Zhang, F.4
Marraffini, L.A.5
-
43
-
-
84866340552
-
Repression of bacterial lipoprotein production by Francisella novicida facilitates evasion of innate immune recognition
-
Jones CL, Sampson TR, Nakaya HI, Pulendran B, Weiss DS, (2012) Repression of bacterial lipoprotein production by Francisella novicida facilitates evasion of innate immune recognition. Cell Microbiol 14: 1531-1543.
-
(2012)
Cell Microbiol
, vol.14
, pp. 1531-1543
-
-
Jones, C.L.1
Sampson, T.R.2
Nakaya, H.I.3
Pulendran, B.4
Weiss, D.S.5
-
44
-
-
84877782955
-
A CRISPR/Cas system mediates bacterial innate immune evasion and virulence
-
Sampson TR, Saroj SD, Llewellyn AC, Tzeng YL, Weiss DS, (2013) A CRISPR/Cas system mediates bacterial innate immune evasion and virulence. Nature 497: 254-257.
-
(2013)
Nature
, vol.497
, pp. 254-257
-
-
Sampson, T.R.1
Saroj, S.D.2
Llewellyn, A.C.3
Tzeng, Y.L.4
Weiss, D.S.5
-
45
-
-
84884149580
-
Corrigendum: a CRISPR/Cas system mediates bacterial innate immune evasion and virulence
-
Sampson TR, Saroj SD, Llewellyn AC, Tzeng YL, Weiss DS, (2013) Corrigendum: a CRISPR/Cas system mediates bacterial innate immune evasion and virulence. Nature 501: 262.
-
(2013)
Nature
, vol.501
, pp. 262
-
-
Sampson, T.R.1
Saroj, S.D.2
Llewellyn, A.C.3
Tzeng, Y.L.4
Weiss, D.S.5
-
46
-
-
84872618158
-
A novel link between Campylobacter jejuni bacteriophage defence, virulence and Guillain-Barre syndrome
-
Louwen R, Horst-Kreft D, de Boer AG, van der Graaf L, de Knegt G, et al. (2013) A novel link between Campylobacter jejuni bacteriophage defence, virulence and Guillain-Barre syndrome. Eur J Clin Microbiol Infect Dis 32: 207-226.
-
(2013)
Eur J Clin Microbiol Infect Dis
, vol.32
, pp. 207-226
-
-
Louwen, R.1
Horst-Kreft, D.2
de Boer, A.G.3
van der Graaf, L.4
de Knegt, G.5
-
47
-
-
84872607723
-
Bacteriophage genes that inactivate the CRISPR/Cas bacterial immune system
-
Bondy-Denomy J, Pawluk A, Maxwell KL, Davidson AR, (2013) Bacteriophage genes that inactivate the CRISPR/Cas bacterial immune system. Nature 493: 429-432.
-
(2013)
Nature
, vol.493
, pp. 429-432
-
-
Bondy-Denomy, J.1
Pawluk, A.2
Maxwell, K.L.3
Davidson, A.R.4
|