Construction and characterization of a sugar beet (Beta vulgaris) fosmid library

Genome

Volumn 51, Issue 11, 2008, Pages 948-951

  Lange, Cornelia ^a   Holtgräwe, Daniela ^b   Schulz, Britta ^c   Weisshaar, Bernd ^b   Himmelbauer, Heinz ^a,d  

^a MAX PLANCK INSTITUTE FOR MOLECULAR GENETICS   (Germany)

^b BIELEFELD UNIVERSITY   (Germany)

^c KWS SAAT SE   (Germany)

^d CENTRE FOR GENOMIC REGULATION CRG   (Spain)

Author keywords

Fosmid; Genome sequence; Physical mapping; Sugar beet

Indexed keywords

CHLOROPLAST DNA; MITOCHONDRIAL DNA; PLANT DNA; PRIMER DNA;

ARTICLE; BACTERIAL ARTIFICIAL CHROMOSOME; BEET; CHROMOSOME MAP; GENE LIBRARY; GENETICS; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION;

BASE SEQUENCE; BETA VULGARIS; CHROMOSOME MAPPING; CHROMOSOMES, ARTIFICIAL, BACTERIAL; DNA PRIMERS; DNA, CHLOROPLAST; DNA, MITOCHONDRIAL; DNA, PLANT; GENE LIBRARY; MOLECULAR SEQUENCE DATA; POLYMERASE CHAIN REACTION;

BETA VULGARIS; BETA VULGARIS SUBSP. VULGARIS;

EID: 55549101298     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/G08-071     Document Type: Article

References (19)

1. Ammiraju, J.S., Yu, Y., Luo, M., Kudrna, D., Kim, H., Goicoechea, J.L., et al. 2005. Random sheared fosmid library as a new genomic tool to accelerate complete finishing of rice (Oryza sativa spp. Nipponbare) genome sequence: sequencing of gap-specific fosmid clones uncovers new euchromatic portions of the genome. Theor. Appl. Genet. 111: 1596-1607. doi:10.1007/s00122-005-0091-3. PMID:16200416.
2. Arumuganathan, K., and Earle, E.D. 1991. Nuclear DNA content of some important plant species. Plant Mol. Biol. Rep. 9: 208-211. doi:10.1007/BF02672069.
3. Birnboim, H.C., and Doly, J. 1979. A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res. 7: 1513-1523. doi:10.1093/nar/7.6.1513. PMID:388356.
4. Bovee, D., Zhou, Y., Haugen, E., Wu, Z., Hayden, H.S., Gillett, W., et al. 2008. Closing gaps in the human genome with fosmid resources generated from multiple individuals. Nat. Genet. 40: 96-101. doi:10.1038/ng.2007.34. PMID:18157130.
5. Gindullis, F., Dechyeva, D., and Schmidt, T. 2001. Construction and characterization of a BAC library for the molecular dissection of a single wild beet centromere and sugar beet (Beta vulgaris) genome analysis. Genome, 44: 846-855. doi:10.1139/gen-44-5-846. PMID:11681609.
6. Hagihara, E., Matsuhira, H., Ueda, M., Mikami, T., and Kubo, T. 2005. Sugar beet BAC library construction and assembly of a contig spanning Rf1, a restorer-of-fertility gene for Owen cytoplasmic male sterility. Mol. Genet. Genomics, 274: 316-323. doi:10.1007/s00438-005-0024-5. PMID:16080000.
7. Herwig, R., Schulz, B., Weisshaar, B., Hennig, S., Steinfath, M., Drungowski, M., et al. 2002. Construction of a 'unigene' cDNA clone set by oligonucleotide fingerprinting allows access to 25 000 potential sugar beet genes. Plant J. 32: 845-857. doi:10.1046/j.1365-313X.2002.01457.x. PMID:12472698.
8. Hohmann, U., Jacobs, G., Telgmann, A., Gaafar, R.M., Alam, S., and Jung, C. 2003. A bacterial artificial chromosome (BAC) library of sugar beet and a physical map of the region encompassing the bolting gene B. Mol. Genet. Genomics, 269: 126-136. doi:10.1007/s00438-003-0821-7. PMID:12715161.
9. Jacobs, G., Dechyeva, D., Wenke, T., Weber, B., and Schmidt, T. 2008. A BAC library of Beta vulgaris L. for the targeted isolation of centromeric DNA and molecular cytogenetics of Beta species. Genetica, April 4. [Epub ahead of print.] doi:10.1007/s10709-008-9265-7. PMID:18386131.
10. Kim, U.J., Shizuya, H., de Jong, P.J., Birren, B., and Simon, M.I. 1992. Stable propagation of cosmid sized human DNA inserts in an F factor based vector. Nucleic Acids Res. 20: 1083-1085. doi:10.1093/nar/20.5.1083. PMID:1549470.
11. Kubo, T., Nishizawa, S., Sugawara, A., Itchoda, N., Estiati, A., and Mikami, T. 2000. The complete nucleotide sequence of the mitochondrial genome of sugar beet (Beta vulgaris L.) reveals a novel gene for tRNA(Cys) (GCA). Nucleic Acids Res. 28: 2571-2576. doi:10.1093/nar/28.13.2571. PMID:10871408.
12. McGrath, M.J., Shaw, R.S., De Los Reyes, B.G., and Weiland, J.J. 2004. Construction of a sugar beet BAC library from a hybrid with diverse traits. Plant Mol. Biol. Rep. 22: 23-28. doi:10.1007/BF02773345.
13. McNeal, J.R., Leebens-Mack, J.H., Arumuganathan, K., Kuehl, J.V., Boore, J.L., and DePamphilis, C.W. 2006. Using partial genomic fosmid libraries for sequencing complete organellar genomes. Biotechniques, 41: 69-73. PMID:16869516.
14. Newman, T.L., Tuzun, E., Morrison, V.A., Hayden, K.E., Ventura, M., McGrath, S.D., et al. 2005. A genome-wide survey of structural variation between human and chimpanzee. Genome Res. 15: 1344-1356. doi:10.1101/gr.4338005. PMID:16169929.
15. Schneider, K., Borchardt, D.C., Schafer-Pregl, R., Nagl, N., Glass, C., Jeppsson, A., et al. 1999. PCR-based cloning and segregation analysis of functional gene homologues in Beta vulgaris. Mol. Gen. Genet. 262: 515-524. doi:10.1007/s004380051113. PMID:10589840.
16. Schneider, K., Kulosa, D., Soerensen, T.R., Mohring, S., Heine, M., Durstewitz, G., et al. 2007. Analysis of DNA polymorphisms in sugar beet (Beta vulgaris L.) and development of an SNP-based map of expressed genes. Theor. Appl. Genet. 115: 601-615. doi:10.1007/s00122-007-0591-4. PMID:17622508.
17. Schulte, D., Cai, D., Kleine, M., Fan, L., Wang, S., and Jung, C. 2006. A complete physical map of a wild beet (Beta procumbens) translocation in sugar beet. Mol. Genet. Genomics, 275: 504-511. doi:10.1007/s00438-006- 0108-x. PMID:16496176.
18. Schumacher, K., Schondelmaier, J., Barzen, E., Steinrucken, G., Borchardt, D., Weber, W.E., and Salamini, C.J.F. 1997. Combining different linkage maps in sugar beet (Beta vulgaris L.) to make one map. Plant Breed. 116: 23-38. doi:10.1111/j.1439-0523.1997.tb00971.x.
19. Tuzun, E., Sharp, A.J., Bailey, J.A., Kaul, R., Morrison, V.A., Pertz, L.M., et al. 2005. Fine-scale structural variation of the human genome. Nat. Genet. 37: 727-732. doi:10.1038/ng1562. PMID:15895083.