The molecular structure of the liquid-ordered phase of lipid bilayers

Journal of the American Chemical Society

Volumn 136, Issue 2, 2014, Pages 725-732

  Sodt, Alexander J ^a   Sandar, Michael Logan ^c   Gawrisch, Klaus ^b   Pastor, Richard W ^a   Lyman, Edward ^c  

^a NATIONAL HEART LUNG AND BLOOD INSTITUTE   (United States)

^b NATIONAL INSTITUTE ON ALCOHOL ABUSE AND ALCOHOLISM   (United States)

^c UNIVERSITY OF DELAWARE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

HYDROCARBON CHAINS; LIQUID-ORDERED PHASE; MEMBRANE COMPONENTS; MOLECULAR DYNAMICS SIMULATIONS; SATURATED HYDROCARBONS; SIGNALING PATHWAYS; SMALL-ANGLE X-RAYS; UNSATURATED CHAINS;

CELL MEMBRANES; CHOLESTEROL; HYDROCARBONS; LIPID BILAYERS; MOLECULAR DYNAMICS; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY;

CHAINS;

CHOLESTEROL; HYDROCARBON;

ARTICLE; CALCULATION; CELL MEMBRANE; CHEMICAL STRUCTURE; LIPID BILAYER; LIQUID; MEASUREMENT; MOLECULAR DYNAMICS; MOLECULAR INTERACTION; NEUTRON SCATTERING; PHASE PARTITIONING; PHASE SEPARATION; PROTON NUCLEAR MAGNETIC RESONANCE; SIGNAL TRANSDUCTION; SIMULATION; X RAY CRYSTALLOGRAPHY;

CHOLESTEROL; DIFFUSION; LIPID BILAYERS; MAGNETIC RESONANCE SPECTROSCOPY; MOLECULAR DYNAMICS SIMULATION; MOLECULAR STRUCTURE;

EID: 84892761976     PISSN: 00027863     EISSN: 15205126     Source Type: Journal    
DOI: 10.1021/ja4105667     Document Type: Article

References (56)

1. Shimshick, E. J.; McConnell, H. M. Biochemistry 1973, 12, 2351
2. Feigenson, G. W. Annu. Rev. Biophys. Biomol. Struct. 2007, 36, 63
3. Veatch, S. L.; Keller, S. L. Biochim. Biophys. Acta, Mol. Cell Res. 2005, 1746, 172
4. Bartels, T.; Lankalapalli, R. S.; Bittman, R.; Beyer, K.; Brown, M. F. J. Am. Chem. Soc. 2008, 130, 14521
5. Hjort Ipsen, J.; Karlström, G.; Mourtisen, O. G.; Wennerström, H.; Zuckermann, M. J. Biochim. Biophys. Acta, Biomembr. 1987, 905, 162
6. Lingwood, D.; Simons, K. Science 2010, 327, 46
7. Pike, L. J. J. Lipid Res. 2006, 47, 1597
8. Simons, K.; Ikonen, E. Nature 1997, 387, 569
9. Eggeling, C.; Ringemann, C.; Medda, R.; Schwarzmann, G.; Sandhoff, K.; Polyakova, S.; Belov, V. N.; Hein, B.; von Middendorff, C.; Schonle, A.; Hell, S. W. Nature 2009, 457, 1159
10. Sezgin, E.; Levental, I.; Grzybek, M.; Schwarzmann, G.; Mueller, V.; Honigmann, A.; Belov, V. N.; Eggeling, C.; Coskun, Ü.; Simons, K.; Schwille, P. Biochim. Biophys. Acta, Biomembr. 2012, 1818, 1777
11. Veatch, S. L.; Cicuta, P.; Sengupta, P.; Honerkamp-Smith, A.; Holowka, D.; Baird, B. ACS Chem. Biol. 2008, 3, 287
12. Honerkamp-Smith, A. R.; Cicuta, P.; Collins, M. D.; Veatch, S. L.; den Nijs, M.; Schick, M.; Keller, S. L. Biophys. J. 2008, 95, 236
13. Veatch, S. L.; Soubias, O.; Keller, S. L.; Gawrisch, K. Proc. Nat. Acad. Sci. U.S.A. 2007, 104, 17650
14. Heberle, F. A.; Petruzielo, R. S.; Pan, J.; Drazba, P.; Kučerka, N.; Standaert, R. F.; Feigenson, G. W.; Katsaras, J. J. Am. Chem. Soc. 2013, 135, 6853
15. Zhao, J.; Wu, J.; Heberle, F. A.; Mills, T. T.; Klawitter, P.; Huang, G.; Costanza, G.; Feigenson, G. W. Biochim. Biophys. Acta, Biomembr. 2007, 1768, 2764
16. Heberle, F. A.; Wu, J.; Goh, S. L.; Petruzielo, R. S.; Feigenson, G. W. Biophys. J. 2010, 99, 3309
17. Konyakhina, T. M.; Goh, S. L.; Amazon, J.; Heberle, F. A.; Wu, J.; Feigenson, G. W. Biophys. J. 2011, 101, L8
18. Róg, T.; Pasenkiewicz-Gierula, M.; Vattulainen, I.; Karttunen, M. Biochim. Biophys. Acta, Biomembr. 2009, 1788, 97
19. Khelashvili, G.; Pabst, G.; Harries, D. J. Phys. Chem. B 2010, 114, 7524
20. Martinez-Seara, H.; Róg, T.; Karttunen, M.; Vattulainen, I.; Reigada, R. PLoS ONE 2010, 5, e11162
21. Róg, T.; Pasenkiewicz-Gierula, M. Biophys. J. 2001, 81, 2190
22. Waheed, Q.; Tjörnhammar, R.; Edholm, O. Biophys. J. 2012, 103, 2125
23. Perlmutter, J. D.; Sachs, J. N. J. Am. Chem. Soc. 2009, 131, 16362
24. Pandit, S. A.; Vasudevan, S.; Chiu, S. W.; Jay Mashl, R.; Jakobsson, E.; Scott, H. L. Biophys. J. 2004, 87, 1092
25. Niemelä, P. S.; Ollila, S.; Hyvönen, M. T.; Karttunen, M.; Vattulainen, I. PLoS Comput. Biol. 2007, 3, e34
26. Alameida, P. F. F.; Vaz, W. L. C. In Handbook of Biological Physics; Lipowsky, R.; Sackman, E., Eds.; Elsevier Science B.V.: Amsterdam, 1995; Vol. 1, p 305.
27. de Joannis, J.; Coppock, P. S.; Yin, F.; Mori, M.; Zamorano, A.; Kindt, J. T. J. Am. Chem. Soc. 2011, 133, 3625
28. Shaw, D. E.; Maragakis, P.; Lindorff-Larsen, K.; Piana, S.; Dror, R. O.; Eastwood, M. P.; Bank, J. A.; Jumper, J. M.; Salmon, J. K.; Shan, Y.; Wriggers, W. Science 2010, 330, 341
29. Jo, S.; Kim, T.; Iyer, V. G.; Im, W. J. Comput. Chem. 2008, 29, 1859
30. Shaw, D. E.; Dror, R. O.; Salmon, J. K.; Grossman, J. P.; Mackenzie, K. M.; Bank, J. A.; Young, C.; Deneroff, M. M.; Batson, B.; Bowers, K. J.; Chow, E.; Eastwood, M. P.; Ierardi, D. J.; Klepeis, J. L.; Kuskin, J. S.; Larson, R. H.; Lindorff-Larsen, K.; Maragakis, P.; Moraes, M. A.; Piana, S.; Shan, Y.; Towles, B. In Proceedings of the Conference on High Performance Computing Networking, Storage and Analysis, Portland, OR, November 14-20, 2009; ACM: New York, 2009, p 1.
31. Martyna, G. J.; Tobias, D. J.; Klein, M. L. J. Chem. Phys. 1994, 101, 4177
32. Shan, Y.; Klepeis, J. L.; Eastwood, M. P.; Dror, R. O.; Shaw, D. E. J. Chem. Phys. 2005, 122, 054101
33. Baum, L. E.; Petrie, T.; Soules, G.; Weiss, N. Ann. Math. Stat. 1970, 41, 164
34. Welch, L. R. IEEE Inf. Theory Soc. Newsl. 2003, 53, 4
35. Viterbi, A. J. IEEE Trans. Inf. Theory 1967, 13, 260
36. Lafleur, M.; Cullis, P. R.; Bloom, M. Eur. Biophys. J. 1990, 19, 55
37. Polozov, I. V.; Bezrukov, L.; Gawrisch, K.; Zimmerberg, J. Nat. Chem. Biol. 2008, 4, 248
38. Orädd, G.; Westerman, P. W.; Lindblom, G. Biophys. J. 2005, 89, 315
39. Mills, T. T.; Tristram-Nagle, S.; Heberle, F. A.; Morales, N. F.; Zhao, J.; Wu, J.; Toombes, G. E. S.; Nagle, J. F.; Feigenson, G. W. Biophys. J. 2008, 95, 682
40. Armstrong, C. L.; Marquardt, D.; Dies, H.; Kučerka, N.; Yamani, Z.; Harroun, T. A.; Katsaras, J.; Shi, A.-C.; Rheinstädter, M. C. PLoS ONE 2013, 8, e66162
41. Hammond, A. T.; Heberle, F. A.; Baumgart, T.; Holowka, D.; Baird, B.; Feigenson, G. W. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 6320
42. Zhao, J.; Wu, J.; Veatch, S. L. Biophys. J. 2013, 104, 825
43. Kusumi, A.; Fujiwara, T. K.; Morone, N.; Yoshida, K. J.; Chadda, R.; Xie, M.; Kasai, R. S.; Suzuki, K. G. N. Seminars in Cell & Developmental Biology 2012, 23, 126
44. Kusumi, A.; Sako, Y. Curr. Opin. Cell Biol. 1996, 8, 566
45. Fan, J.; Sammalkorpi, M.; Haataja, M. Phys. Rev. Lett. 2010, 104, 118101
46. Fan, J.; Sammalkorpi, M.; Haataja, M. Phys. Rev. Lett. 2008, 100, 178102
47. Gowrishankar, K.; Ghosh, S.; Saha, S.; C, R.; Mayor, S.; Rao, M. Cell 2012, 149, 1353
48. Gershfeld, N. L. Biophys. J. 1978, 22, 469
49. Hinz, H.-J.; Sturtevant, J. M. J. Biol. Chem. 1972, 247, 3697
50. Presti, F. T.; Pace, R. J.; Chan, S. I. Biochemistry 1982, 21, 3831
51. Radhakrishnan, A.; McConnell, H. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 12662
52. Sugár, I. P.; Chong, P. L. G. J. Am. Chem. Soc. 2011, 134, 1164
53. Sankaram, M. B.; Thompson, T. E. Biochemistry 1990, 29, 10676
54. Sankaram, M. B.; Thompson, T. E. Proc. Natl. Acad. Sci. U.S.A. 1991, 88, 8686
55. Martinez, G. V.; Dykstra, E. M.; Lope-Piedrafita, S.; Brown, M. F. Langmuir 2004, 20, 1043
56. Endress, E.; Heller, H.; Casalta, H.; Brown, M. F.; Bayerl, T. M. Biochemistry 2002, 41, 13078