-
1
-
-
27144464816
-
Methods in Yeast Genetics
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
Amberg, D. C., D. Burke, and J. N. Strathern, 2005 Methods in Yeast Genetics. A Cold Spring Harbor Laboratory Course Manual, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(2005)
A Cold Spring Harbor Laboratory Course Manual
-
-
Amberg, D.C.1
Burke, D.2
Strathern, J.N.3
-
2
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders, S., and W. Huber, 2010 Differential expression analysis for sequence count data. Genome Biol. 11: R106.
-
(2010)
Genome Biol.
, vol.11
-
-
Anders, S.1
Huber, W.2
-
3
-
-
84867449264
-
Anomalies of the anaerobic tricarboxylic acid cycle in Shewanella oneidensis revealed by Tn-seq
-
Brutinel, E. D., and J. A. Gralnick, 2012 Anomalies of the anaerobic tricarboxylic acid cycle in Shewanella oneidensis revealed by Tn-seq. Mol. Microbiol. 86: 273-283.
-
(2012)
Mol. Microbiol.
, vol.86
, pp. 273-283
-
-
Brutinel, E.D.1
Gralnick, J.A.2
-
4
-
-
79958114328
-
Global gene disruption in human cells to assign genes to phenotypes by deep sequencing
-
Carette, J. E., C. P. Guimaraes, I. Wuethrich, V. A. Blomen, M. Varadarajan et al., 2011 Global gene disruption in human cells to assign genes to phenotypes by deep sequencing. Nat. Biotechnol. 29: 542- 546.
-
(2011)
Nat. Biotechnol.
, vol.29
-
-
Carette, J.E.1
Guimaraes, C.P.2
Wuethrich, I.3
Blomen, V.A.4
Varadarajan, M.5
-
5
-
-
52949114615
-
Eigen-R2 for dissecting variation in highdimensional studies
-
Chen, L., and J. Storey, 2008 Eigen-R2 for dissecting variation in highdimensional studies. Bioinformatics. 24: 2260-2262.
-
(2008)
Bioinformatics.
, vol.24
, pp. 2260-2262
-
-
Chen, L.1
Storey, J.2
-
6
-
-
79955079817
-
Genome-scale identification of resistance functions in Pseudomonas aeruginosa using Tn-seq
-
Gallagher, L. A., J. Shendure, and C. Manoil, 2011 Genome-scale identification of resistance functions in Pseudomonas aeruginosa using Tn-seq. MBio. 2: e00315-10.
-
(2011)
MBio.
, vol.2
-
-
Gallagher, L.A.1
Shendure, J.2
Manoil, C.3
-
7
-
-
70349510646
-
Tracking insertion mutants within libraries by deep sequencing and a genome-wide screen for Haemophilus genes required in the lung
-
Gawronski, J. D., S. M. S. Wong, G. Giannoukos, D. V. Ward, and B. J. Akerley, 2009 Tracking insertion mutants within libraries by deep sequencing and a genome-wide screen for Haemophilus genes required in the lung. Proc. Natl. Acad. Sci. USA 106: 16422-16427.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 16422-16427
-
-
Gawronski, J.D.1
Wong, S.S.M.2
Giannoukos, G.3
Ward, D.V.4
Akerley, B.J.5
-
8
-
-
0037173615
-
Functional profiling of the Saccharomyces cerevisiae genome
-
Giaever, G., A. M. Chu, L. Ni, C. Connelly, L. Riles et al., 2002 Functional profiling of the Saccharomyces cerevisiae genome. Nature 418: 387-391.
-
(2002)
Nature
, vol.418
, pp. 387-391
-
-
Giaever, G.1
Chu, A.M.2
Ni, L.3
Connelly, C.4
Riles, L.5
-
9
-
-
78951484491
-
Systemlevel analysis of genes and functions affecting survival during nutrient starvation in Saccharomyces cerevisiae
-
Gresham, D., V. M. Boer, A. Caudy, N. Ziv, N. J. Brandt et al., 2011 Systemlevel analysis of genes and functions affecting survival during nutrient starvation in Saccharomyces cerevisiae. Genetics 187: 299-317.
-
(2011)
Genetics
, vol.187
, pp. 299-317
-
-
Gresham, D.1
Boer, V.M.2
Caudy, A.3
Ziv, N.4
Brandt, N.J.5
-
10
-
-
77953248612
-
Global fitness profiling of fission yeast deletion strains by barcode sequencing
-
Han, T. X., X.-Y. Xu, M.-J. Zhang, X. Peng, and L.-L. Du, 2010 Global fitness profiling of fission yeast deletion strains by barcode sequencing. Genome Biol. 11: R60.
-
(2010)
Genome Biol.
, vol.11
-
-
Han, T.X.1
Xu, X.Y.2
Zhang, M.J.3
Peng, X.4
Du, L.L.5
-
11
-
-
15444364657
-
On the utility of pooling biological samples in microarray experiments
-
Kendziorski, C., R. A. Irizarry, K. S. Chen, J. D. Haag, and M. N. Gould, 2005 On the utility of pooling biological samples in microarray experiments. Proc. Natl. Acad. Sci. USA 102: 4252-4257.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 4252-4257
-
-
Kendziorski, C.1
Irizarry, R.A.2
Chen, K.S.3
Haag, J.D.4
Gould, M.N.5
-
12
-
-
77955343193
-
Cloud-scale RNA-sequencing differential expression analysis with Myrna
-
Langmead, B., K. D. Hansen, and J. T. Leek, 2010 Cloud-scale RNA-sequencing differential expression analysis with Myrna. Genome Biol. 11: R83.
-
(2010)
Genome Biol.
, vol.11
-
-
Langmead, B.1
Hansen, K.D.2
Leek, J.T.3
-
13
-
-
0001116877
-
Binary codes capable of correcting deletions, insertions and reversals
-
Levenshtein, V., 1966 Binary codes capable of correcting deletions, insertions and reversals. Sov. Phys. Dokl. 10: 707710.
-
(1966)
Sov. Phys. Dokl.
, vol.10
, pp. 707710
-
-
Levenshtein, V.1
-
14
-
-
0347621463
-
Statistical implications of pooling RNA samples for microarray experiments
-
Peng, X., C. L. Wood, E. M. Blalock, K. Chen, P. W. Landfield et al., 2003 Statistical implications of pooling RNA samples for microarray experiments. BMC Bioinformatics 4: 26.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 26
-
-
Peng, X.1
Wood, C.L.2
Blalock, E.M.3
Chen, K.4
Landfield, P.W.5
-
15
-
-
75249087100
-
edger: a bioconductor package for differential expression analysis of digital gene expression data
-
Robinson, M., and D. McCarthy, 2010 edger: a bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26: 139-140.
-
(2010)
Bioinformatics
, vol.26
, pp. 139-140
-
-
Robinson, M.1
McCarthy, D.2
-
16
-
-
77953176036
-
A scaling normalization method for differential expression analysis of RNA-seq data
-
Robinson, M., and A. Oshlack, 2010 A scaling normalization method for differential expression analysis of RNA-seq data. Genome Biol. 11: R25.
-
(2010)
Genome Biol.
, vol.11
-
-
Robinson, M.1
Oshlack, A.2
-
17
-
-
38849098442
-
Cancer proliferation gene discovery through functional genomics
-
Schlabach, M. R., J. Luo, N. L. Solimini, G. Hu, Q. Xu et al., 2008 Cancer proliferation gene discovery through functional genomics. Science (New York, NY) 319: 620-624.
-
(2008)
Science (New York, NY)
, vol.319
, pp. 620-624
-
-
Schlabach, M.R.1
Luo, J.2
Solimini, N.L.3
Hu, G.4
Xu, Q.5
-
18
-
-
38849192515
-
Profiling essential genes in human mammary cells by multiplex RNAi screening
-
Silva, J. M., K. Marran, J. S. Parker, J. Silva, M. Golding et al., 2008 Profiling essential genes in human mammary cells by multiplex RNAi screening. Science 319: 617-620.
-
(2008)
Science
, vol.319
, pp. 617-620
-
-
Silva, J.M.1
Marran, K.2
Parker, J.S.3
Silva, J.4
Golding, M.5
-
19
-
-
80054744229
-
High-throughput RNA interference screening using pooled shRNA libraries and next generation sequencing
-
Sims, D., A. M. Mendes-Pereira, J. Frankum, D. Burgess, M.-A. Cerone et al., 2011 High-throughput RNA interference screening using pooled shRNA libraries and next generation sequencing. Genome Biol. 12: R104.
-
(2011)
Genome Biol.
, vol.12
-
-
Sims, D.1
Mendes-Pereira, A.M.2
Frankum, J.3
Burgess, D.4
Cerone, M.A.5
-
20
-
-
70349634435
-
Quantitative phenotyping via deep barcode sequencing
-
Smith, A. M., L. E. Heisler, J. Mellor, F. Kaper, M. J. Thompson et al., 2009 Quantitative phenotyping via deep barcode sequencing. Genome Res. 19: 1836-1842.
-
(2009)
Genome Res.
, vol.19
, pp. 1836-1842
-
-
Smith, A.M.1
Heisler, L.E.2
Mellor, J.3
Kaper, F.4
Thompson, M.J.5
-
21
-
-
77955237447
-
Highly-multiplexed barcode sequencing: an efficient method for parallel analysis of pooled samples
-
Smith, A. M., L. E. Heisler, R. P. St. Onge, E. Farias-Hesson, I. M. Wallace et al., 2010 Highly-multiplexed barcode sequencing: an efficient method for parallel analysis of pooled samples. Nucleic Acids Res. 38: e142.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Smith, A.M.1
Heisler, L.E.2
Onge, R.P.3
Farias-Hesson, E.4
Wallace, I.M.5
-
22
-
-
0042424602
-
Statistical significance for genomewide studies
-
Storey, J. D., and R. Tibshirani, 2003 Statistical significance for genomewide studies. Proc. Natl. Acad. Sci. USA 100: 9440-9445.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 9440-9445
-
-
Storey, J.D.1
Tibshirani, R.2
-
23
-
-
54449085079
-
Galactose metabolism in Saccharomyces cerevisiae
-
Timson, D. J., 2007 Galactose metabolism in Saccharomyces cerevisiae. Dyn Biochem Process Biotech Mol Biol 1(1): 63-73.
-
(2007)
Dyn Biochem Process Biotech Mol Biol
, vol.1
, Issue.1
, pp. 63-73
-
-
Timson, D.J.1
-
24
-
-
0035861532
-
Systematic genetic analysis with ordered arrays of yeast deletion mutants
-
Tong, A. H., M. Evangelista, A. B. Parsons, H. Xu, G. D. Bader et al., 2001 Systematic genetic analysis with ordered arrays of yeast deletion mutants. Science 294: 2364-2368.
-
(2001)
Science
, vol.294
, pp. 2364-2368
-
-
Tong, A.H.1
Evangelista, M.2
Parsons, A.B.3
Xu, H.4
Bader, G.D.5
-
25
-
-
84872198346
-
Differential analysis of gene regulation at transcript resolution with RNA-seq
-
Trapnell, C., D. G. Hendrickson, M. Sauvageau, L. Goff, J. L. Rinn et al., 2013 Differential analysis of gene regulation at transcript resolution with RNA-seq. Nat. Biotechnol. 31: 46-53.
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 46-53
-
-
Trapnell, C.1
Hendrickson, D.G.2
Sauvageau, M.3
Goff, L.4
Rinn, J.L.5
-
26
-
-
70349611730
-
Tn-seq: high-throughput parallel sequencing for fitness and genetic interaction studies in microorganisms
-
van Opijnen, T., K. L. Bodi, and A. Camilli, 2009 Tn-seq: high-throughput parallel sequencing for fitness and genetic interaction studies in microorganisms. Nat. Methods 6: 767-772.
-
(2009)
Nat. Methods
, vol.6
, pp. 767-772
-
-
van Opijnen, T.1
Bodi, K.L.2
Camilli, A.3
-
27
-
-
75249095274
-
DEGseq: an R package for identifying differentially expressed genes from RNA-seq data
-
Wang, L., Z. Feng, X. Wang, and X. Wang, 2010 DEGseq: an R package for identifying differentially expressed genes from RNA-seq data. Bioinformatics 26: 136-138.
-
(2010)
Bioinformatics
, vol.26
, pp. 136-138
-
-
Wang, L.1
Feng, Z.2
Wang, X.3
Wang, X.4
-
28
-
-
0033529707
-
Functional characterization of the S
-
Winzeler, E. A., D. D. Shoemaker, A. Astromoff, H. Liang, K. Anderson et al., 1999 Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. Science 285: 901-906.
-
(1999)
cerevisiae genome by gene deletion and parallel analysis. Science
, vol.285
, pp. 901-906
-
-
Winzeler, E.A.1
Shoemaker, D.D.2
Astromoff, A.3
Liang, H.4
Anderson, K.5
|