-
1
-
-
77949461898
-
U12 type introns were lost at multiple occasions during evolution
-
Bartschat S, Samuelsson T. 2010. U12 type introns were lost at multiple occasions during evolution. BMC Genomics 11:106.
-
(2010)
BMC Genomics
, vol.11
, pp. 106
-
-
Bartschat, S.1
Samuelsson, T.2
-
2
-
-
0022431014
-
Selfish DNA and the origin of introns
-
Cavalier-Smith T. 1985. Selfish DNA and the origin of introns. Nature 315: 283-284.
-
(1985)
Nature
, vol.315
, pp. 283-284
-
-
Cavalier-Smith, T.1
-
3
-
-
16344385067
-
Complex spliceosomal organization ancestral to extant eukaryotes
-
Collins L, Penny D. 2005. Complex spliceosomal organization ancestral to extant eukaryotes. Mol Biol Evol. 22:1053-1066.
-
(2005)
Mol Biol Evol.
, vol.22
, pp. 1053-1066
-
-
Collins, L.1
Penny, D.2
-
4
-
-
80053442983
-
A detailed history of intron-rich eukaryotic ancestors inferred from a global survey of 100 complete genomes
-
Csuros M, Rogozin IB, Koonin EV. 2011. A detailed history of intron-rich eukaryotic ancestors inferred from a global survey of 100 complete genomes. PLoS Comput Biol. 7:e1002150.
-
(2011)
PLoS Comput Biol.
, vol.7
-
-
Csuros, M.1
Rogozin, I.B.2
Koonin, E.V.3
-
5
-
-
84874534961
-
Gene make-up: Rapid and massive intron gains after horizontal transfer of a bacterial alpha-amylase gene to Basidiomycetes
-
Da Lage JL, Binder M, Hua-Van A, Janecek S, Casane D. 2013. Gene make-up: rapid and massive intron gains after horizontal transfer of a bacterial alpha-amylase gene to Basidiomycetes. BMC Evol Biol. 13:40.
-
(2013)
BMC Evol Biol.
, vol.13
, pp. 40
-
-
Da Lage, J.L.1
Binder, M.2
Hua-Van, A.3
Janecek, S.4
Casane, D.5
-
6
-
-
78649705889
-
Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate
-
Denoeud F, et al. 2010. Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate. Science 330: 1381-1385.
-
(2010)
Science
, vol.330
, pp. 1381-1385
-
-
Denoeud, F.1
-
7
-
-
33746830079
-
Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features
-
Derelle E, et al. 2006. Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Proc Natl Acad Sci U S A. 103:11647-11652.
-
(2006)
Proc Natl Acad Sci U S A.
, vol.103
, pp. 11647-11652
-
-
Derelle, E.1
-
8
-
-
0018263844
-
Why genes in pieces?
-
Gilbert W. 1978. Why genes in pieces? Nature 271:501.
-
(1978)
Nature
, vol.271
, pp. 501
-
-
Gilbert, W.1
-
9
-
-
84860513145
-
The spliceosome: A flexible, reversible macromolecular machine
-
Hoskins AA, Moore MJ. 2012. The spliceosome: a flexible, reversible macromolecular machine. Trends Biochem Sci. 37:179-188.
-
(2012)
Trends Biochem Sci.
, vol.37
, pp. 179-188
-
-
Hoskins, A.A.1
Moore, M.J.2
-
10
-
-
50849088978
-
Evolutionary convergence on highly-conserved 3' intron structures in intron-poor eukaryotes and insights into the ancestral eukaryotic genome
-
Irimia M, Roy SW. 2008. Evolutionary convergence on highly-conserved 3' intron structures in intron-poor eukaryotes and insights into the ancestral eukaryotic genome. PLoS Genet. 4:e1000148.
-
(2008)
PLoS Genet.
, vol.4
-
-
Irimia, M.1
Roy, S.W.2
-
11
-
-
78651503221
-
Comparative analysis of information contents relevant to recognition of introns in many species
-
Iwata H, Gotoh O. 2011. Comparative analysis of information contents relevant to recognition of introns in many species. BMC Genomics 12:45.
-
(2011)
BMC Genomics
, vol.12
, pp. 45
-
-
Iwata, H.1
Gotoh, O.2
-
12
-
-
38349125022
-
Translational control of intron splicing in eukaryotes
-
Jaillon O, et al. 2008. Translational control of intron splicing in eukaryotes. Nature 451:359-362.
-
(2008)
Nature
, vol.451
, pp. 359-362
-
-
Jaillon, O.1
-
13
-
-
33947627116
-
Ostreococcus tauri: Seeing through the genes to the genome
-
Keeling PJ. 2007. Ostreococcus tauri: seeing through the genes to the genome. Trends Genet. 23:151-154.
-
(2007)
Trends Genet.
, vol.23
, pp. 151-154
-
-
Keeling, P.J.1
-
14
-
-
34047175831
-
The origin of introns and their role in eukaryogenesis: A compromise solution to the introns-early versus introns-late debate?
-
Koonin EV. 2006. The origin of introns and their role in eukaryogenesis: a compromise solution to the introns-early versus introns-late debate? Biol Direct. 1:22.
-
(2006)
Biol Direct.
, vol.1
, pp. 22
-
-
Koonin, E.V.1
-
15
-
-
69649109364
-
Circos: An information aesthetic for comparative genomics
-
Krzywinski M, et al. 2009. Circos: an information aesthetic for comparative genomics. Genome Res. 19:1639-1645.
-
(2009)
Genome Res.
, vol.19
, pp. 1639-1645
-
-
Krzywinski, M.1
-
16
-
-
70849137211
-
Extensive, recent intron gains in Daphnia populations
-
Li W, Tucker AE, Sung W, Thomas WK, Lynch M. 2009. Extensive, recent intron gains in Daphnia populations. Science 326:1260-1262.
-
(2009)
Science
, vol.326
, pp. 1260-1262
-
-
Li, W.1
Tucker, A.E.2
Sung, W.3
Thomas, W.K.4
Lynch, M.5
-
17
-
-
0037197986
-
Intron evolution as a population-genetic process
-
LynchM. 2002. Intron evolution as a population-genetic process. Proc Natl Acad Sci U S A. 99:6118-6123.
-
(2002)
Proc Natl Acad Sci U S A.
, vol.99
, pp. 6118-6123
-
-
Lynch, M.1
-
18
-
-
30744475434
-
The origins of eukaryotic gene structure
-
LynchM. 2006. The origins of eukaryotic gene structure. Mol Biol Evol. 23: 450-468.
-
(2006)
Mol Biol Evol.
, vol.23
, pp. 450-468
-
-
Lynch, M.1
-
19
-
-
0345306751
-
The origins of genome complexity
-
Lynch M, Conery JS. 2003. The origins of genome complexity. Science 302:1401-1404.
-
(2003)
Science
, vol.302
, pp. 1401-1404
-
-
Lynch, M.1
Conery, J.S.2
-
20
-
-
0037387431
-
Messenger RNA surveillance and the evolutionary proliferation of introns
-
Lynch M, Kewalramani A. 2003. Messenger RNA surveillance and the evolutionary proliferation of introns. Mol Biol Evol. 20:563-571.
-
(2003)
Mol Biol Evol.
, vol.20
, pp. 563-571
-
-
Lynch, M.1
Kewalramani, A.2
-
22
-
-
33644783626
-
Introns and the origin of nucleus-cytosol compartmentalization
-
Martin W, Koonin EV. 2006. Introns and the origin of nucleus-cytosol compartmentalization. Nature 440:41-45.
-
(2006)
Nature
, vol.440
, pp. 41-45
-
-
Martin, W.1
Koonin, E.V.2
-
23
-
-
84865319982
-
Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage
-
Moreau H, et al. 2012. Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage. Genome Biol. 13:R74.
-
(2012)
Genome Biol.
, vol.13
-
-
Moreau, H.1
-
24
-
-
33748974763
-
Phase distribution of spliceosomal introns: Implications for intron origin
-
Nguyen HD, Yoshihama M, Kenmochi N. 2006. Phase distribution of spliceosomal introns: implications for intron origin. BMC Evol Biol. 6:69.
-
(2006)
BMC Evol Biol.
, vol.6
, pp. 69
-
-
Nguyen, H.D.1
Yoshihama, M.2
Kenmochi, N.3
-
25
-
-
14044252770
-
Patterns of intron gain and loss in fungi
-
Nielsen CB, Friedman B, Birren B, Burge CB, Galagan JE. 2004. Patterns of intron gain and loss in fungi. PLoS Biol. 2:e422.
-
(2004)
PLoS Biol.
, vol.2
-
-
Nielsen, C.B.1
Friedman, B.2
Birren, B.3
Burge, C.B.4
Galagan, J.E.5
-
26
-
-
84868159385
-
Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi
-
Ohm RA, et al. 2012. Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi. PLoS Pathog. 8:e1003037.
-
(2012)
PLoS Pathog.
, vol.8
-
-
Ohm, R.A.1
-
27
-
-
80054680031
-
Introns within ribosomal protein genes regulate the production and function of yeast ribosomes
-
Parenteau J, et al. 2011. Introns within ribosomal protein genes regulate the production and function of yeast ribosomes. Cell 147:320-331.
-
(2011)
Cell
, vol.147
, pp. 320-331
-
-
Parenteau, J.1
-
30
-
-
59349107038
-
Mystery of intron gain: New data and new models
-
Roy SW, Irimia M. 2009. Mystery of intron gain: new data and new models. Trends Genet. 25:67-73.
-
(2009)
Trends Genet.
, vol.25
, pp. 67-73
-
-
Roy, S.W.1
Irimia, M.2
-
31
-
-
34547688982
-
A very high fraction of unique intron positions in the intron-rich diatom Thalassiosira pseudonana indicates widespread intron gain
-
Roy SW, Penny D. 2007. A very high fraction of unique intron positions in the intron-rich diatom Thalassiosira pseudonana indicates widespread intron gain. Mol Biol Evol. 24:1447-1457.
-
(2007)
Mol Biol Evol.
, vol.24
, pp. 1447-1457
-
-
Roy, S.W.1
Penny, D.2
-
32
-
-
0037202361
-
On biased distribution of introns in various eukaryotes
-
Sakurai A, et al. 2002. On biased distribution of introns in various eukaryotes. Gene 300:89-95.
-
(2002)
Gene
, vol.300
, pp. 89-95
-
-
Sakurai, A.1
-
33
-
-
84869065441
-
ORCAE: Online resource for community annotation of eukaryotes
-
Sterck L, Billiau K, Abeel T, RouzéP, Van de Peer Y. 2012. ORCAE: online resource for community annotation of eukaryotes. Nat Methods. 9: 1041.
-
(2012)
Nat Methods.
, vol.9
, pp. 1041
-
-
Sterck, L.1
Billiau, K.2
Abeel, T.3
Rouzé, P.4
Van De Peer, Y.5
-
34
-
-
78651266825
-
Community cyberinfrastructure for advanced microbial ecology research and analysis: The camera resource
-
Sun S, et al. 2011. Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource. Nucleic Acids Res. 39:D546-D551.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Sun, S.1
-
35
-
-
39749089458
-
Violating the splicing rules: TG dinucleotides function as alternative 3' splice sites in U2-dependent introns
-
Szafranski K, et al. 2007. Violating the splicing rules: TG dinucleotides function as alternative 3' splice sites in U2-dependent introns. Genome Biol. 8:R154.
-
(2007)
Genome Biol.
, vol.8
-
-
Szafranski, K.1
-
36
-
-
82955233922
-
Evidence for extensive recent intron transposition in closely related fungi
-
Torriani SF, Stukenbrock EH, Brunner PC, McDonald BA, Croll D. 2011. Evidence for extensive recent intron transposition in closely related fungi. Curr Biol. 21:2017-2022.
-
(2011)
Curr Biol.
, vol.21
, pp. 2017-2022
-
-
Torriani, S.F.1
Stukenbrock, E.H.2
Brunner, P.C.3
McDonald, B.A.4
Croll, D.5
-
37
-
-
46449086933
-
Both catalytic steps of nuclear pre-mRNA splicing are reversible
-
Tseng CK, Cheng SC. 2008. Both catalytic steps of nuclear pre-mRNA splicing are reversible. Science 320:1782-1784.
-
(2008)
Science
, vol.320
, pp. 1782-1784
-
-
Tseng, C.K.1
Cheng, S.C.2
-
38
-
-
84863723204
-
Birth of new spliceosomal introns in fungi by multiplication of introner-like elements
-
van der Burgt A, Severing E, de Wit PJGM, Collemare J. 2012. Birth of new spliceosomal introns in fungi by multiplication of introner-like elements. Curr Biol. 22:1260-1265.
-
(2012)
Curr Biol.
, vol.22
, pp. 1260-1265
-
-
Van Der Burgt, A.1
Severing, E.2
De Wit, P.J.G.M.3
Collemare, J.4
-
40
-
-
64849088316
-
Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas
-
Worden AZ, et al. 2009. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science 324:268-272.
-
(2009)
Science
, vol.324
, pp. 268-272
-
-
Worden, A.Z.1
-
41
-
-
84865845484
-
Identifying the mechanisms of intron gain: Progress and trends
-
Yenerall P, Zhou L. 2012. Identifying the mechanisms of intron gain: progress and trends. Biol Direct. 7:29.
-
(2012)
Biol Direct.
, vol.7
, pp. 29
-
-
Yenerall, P.1
Zhou, L.2
|