Engineered fluorescent proteins illuminate the bacterial periplasm

Computational and Structural Biotechnology Journal

Volumn 3, Issue 4, 2012, Pages e201210013-

  Dammeyer, Thorben ^a   Tinnefeld, Philip ^a  

^a TECHNICAL UNIVERSITY OF BRAUNSCHWEIG   (Germany)

Author keywords

Bacterial Export; Chromophore Maturation; Fluorescent Proteins; Periplasm; Protein Folding; Sfgfp

Indexed keywords

EID: 84892441057     PISSN: None     EISSN: 20010370     Source Type: Journal    
DOI: 10.5936/csbj.201210013     Document Type: Short Survey

References (50)

1. Shimomura O, Johnson FH, Saiga Y (1962) Extraction, purification and properties of aequorin, a bioluminescent protein from the luminous hydromedusan, Aequorea.Journal of cellular and comparative physiology 59: 223-239.
2. Chalfie M, Tu Y, Euskirchen G, Ward W, Prasher DC (1994) Green fluorescent protein as a marker for gene expression. Science 263: 802-805. (Pubitemid 24093206)
3. Reid BG, Flynn GC (1997) Chromophore formation in green fluorescent protein. Biochemistry 36: 6786-6791. (Pubitemid 27242339)
4. Dammeyer T, Bagby SC, Sullivan MB, Chisholm SW, Frankenberg-Dinkel N (2008) Efficient phage-mediated pigment biosynthesis in oceanic cyanobacteria. Current biology : CB 18: 442-448.
5. Shaner NC, Campbell RE, Steinbach PA, Giepmans BN, Palmer AE, et al.(2004) Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein. Nature Biotechnology 22: 1567-1572. (Pubitemid 40039460)
6. Crameri A, Whitehorn EA, Tate E, Stemmer WP (1996) Improved green fluorescent protein by molecular evolution using DNA shuffling. Nature Biotechnology 14: 315-319.
7. Cormack BP, Valdivia RH, Falkow S (1996) FACS-optimized mutants of the green fluorescent protein (GFP). Gene 173: 33-38. (Pubitemid 26239677)
8. Dai M, Fisher HE, Temirov J, Kiss C, Phipps ME, et al. (2007) The creation of a novel fluorescent protein by guided consensus engineering. Protein engineering, design & selection : PEDS 20: 69-79. (Pubitemid 46410871)
9. Yang TT, Cheng L, Kain SR (1996) Optimized codon usage and chromophore mutations provide enhanced sensitivity with the green fluorescent protein. Nucleic Acids Research 24: 4592-4593. (Pubitemid 26388650)
10. Spencer PS, Barral JM (2012) Genetic code redundancy and its influence on the encoded polypeptides.Computational and Structural Biotechnology Journal.
11. Gehl C, Waadt R, Kudla J, Mendel RR, Hansch R (2009) New GATEWAY vectors for high throughput analyses of protein-protein interactions by bimolecular fluorescence complementation. Molecular plant 2: 1051-1058.
12. Hu CD, Chinenov Y, Kerppola TK (2002) Visualization of interactions among bZIP and Rel family proteins in living cells using bimolecular fluorescence complementation. Molecular cell 9: 789-798. (Pubitemid 34454889)
13. Hu CD, Kerppola TK (2003) Simultaneous visualization of multiple protein interactions in living cells using multicolor fluorescence complementation analysis. Nature Biotechnology 21: 539-545. (Pubitemid 36532019)
14. Zhou J, Lin J, Zhou C, Deng X, Xia B (2011) An improved bimolecular fluorescence complementation tool based on superfolder green fluorescent protein. Acta biochimica et biophysica Sinica 43: 239-244.
15. Brakemann T, Stiel AC, Weber G, Andresen M, Testa I, et al. (2011) A reversibly photoswitchable GFP-like protein with fluorescence excitation decoupled from switching. Nature Biotechnology 29: 942-947.
16. Grotjohann T, Testa I, Leutenegger M, Bock H, Urban NT, et al. (2011) Diffraction-unlimited all-optical imaging and writing with a photochromic GFP. Nature 478: 204-208.
17. Vaughan JC, Zhuang X (2011) New fluorescent probes for super-resolution imaging. Nature Biotechnology 29: 880-881.
18. Ormo M, Cubitt AB, Kallio K, Gross LA, Tsien RY, et al. (1996) Crystal structure of the Aequorea victoria green fluorescent protein. Science 273: 1392-1395. (Pubitemid 26296528)
19. Iizuka R, Yamagishi-Shirasaki M, Funatsu T (2011) Kinetic study of de novo chromophore maturation of fluorescent proteins. Analytical Biochemistry 414: 173-178.
20. Aronson DE, Costantini LM, Snapp EL (2011) Superfolder GFP is fluorescent in oxidizing environments when targeted via the Sec translocon. Traffic 12: 543-548.
21. Dinh T, Bernhardt TG (2011) Using superfolder green fluorescent protein for periplasmic protein localization studies. Journal of bacteriology 193: 4984-4987.
22. Feilmeier BJ, Iseminger G, Schroeder D, Webber H, Phillips GJ (2000) Green fluorescent protein functions as a reporter for protein localization in Escherichia coli. Journal of bacteriology 182: 4068-4076. (Pubitemid 30436570)
23. Fisher AC, DeLisa MP (2008) Laboratory evolution of fast-folding green fluorescent protein using secretory pathway quality control. PLoSONE3:e2351.
24. Jain RK, Joyce PB, Molinete M, Halban PA, Gorr SU (2001) Oligomerization of green fluorescent protein in the secretory pathway of endocrine cells. The Biochemical Journal 360: 645-649. (Pubitemid 34020271)
25. Pugsley AP (1993) The complete general secretory pathway in gram-negative bacteria. Microbiological Reviews 57: 50-108. (Pubitemid 23078438)
26. Palmer T, Berks BC (2012) The twin-arginine translocation (Tat) protein export pathway. Nature Reviews Microbiology 10: 483-496.
27. Mergulhao FJ, Summers DK, Monteiro GA (2005) Recombinant protein secretion in Escherichia coli. Biotechnology advances 23: 177-202. (Pubitemid 40335946)
28. Dammeyer T, Steinwand M, Kriiger SC, Diibel S, Hust M, et al. (2011) Efficient production of soluble recombinant single chain Fv fragments by a Pseudomonas putida strain KT2440 cell factory. Microbial cell factories 10: 11.
29. Schouten A, Roosien J, Bakker J, Schots A (2002) Formation of disulfide bridges by a single-chain Fv antibody in the reducing ectopic environment of the plant cytosol. The Journal of biological chemistry 277: 19339-19345. (Pubitemid 34967439)
30. Waldo GS, Standish BM, Berendzen J, Terwilliger TC (1999) Rapid protein-folding assay using green fluorescent protein. Nature Biotechnology 17: 691-695. (Pubitemid 29316148)
31. Wu X, Wu D, Lu Z, Chen W, Hu X, et al. (2009) A novel method for high-level production of TEV protease by superfolder GFP tag. Journal of biomedicine & biotechnology 2009: 591923.
32. Siegele DA, Hu JC (1997) Gene expression from plasmids containing the araBAD promoter at subsaturating inducer concentrations represents mixed populations. Proceedings of the National Academy of Sciences of the United States of America 94: 8168-8172. (Pubitemid 27343795)
33. Andersen JB, Sternberg C, Poulsen LK, Bjorn SP, Givskov M, et al. (1998) New unstable variants of green fluorescent protein for studies of transient gene expression in bacteria. Applied and Environmental Microbiology 64: 2240-2246. (Pubitemid 28252792)
34. Pedelacq JD, Cabantous S, Tran T, Terwilliger TC, Waldo GS (2006) Engineering and characterization of a superfolder green fluorescent protein. Nature Biotechnology 24: 79-88. (Pubitemid 43083170)
35. Heim R, Cubitt AB, Tsien RY (1995) Improved green fluorescence. Nature 373: 663-664.
36. Omoya K, Kato Z, Matsukuma E, Li A, Hashimoto K, et al. (2004) Systematic optimization of active protein expression using GFP as a folding reporter. Protein Expression and Purification 36: 327-332. (Pubitemid 38893171)
37. Vasiljevic S, Ren J, Yao Y, Dalton K, Adamson CS, et al. (2006) Green fluorescent protein as a reporter of prion protein folding. Virology journal 3: 59.
38. Waldo GS (2003) Improving protein folding efficiency by directed evolution using the GFP folding reporter. Methods in Molecular Biology 230: 343-359.
39. Cabantous S, Pedelacq JD, Mark BL, Naranjo C, Terwilliger TC, et al. (2005) Recent advances in GFP folding reporter and split-GFP solubility reporter technologies. Application to improving the folding and solubility of recalcitrant proteins from Mycobacterium tuberculosis. Journal of structural and functional genomics 6: 113-119. (Pubitemid 41428118)
40. Thomas JD, Daniel RA, Errington J, Robinson C (2001) Export of active green fluorescent protein to the periplasm by the twin-arginine translocase (Tat) pathway in Escherichia coli. Molecular Microbiology 39: 47-53. (Pubitemid 32057675)
41. Santini CL, Bernadac A, Zhang M, Chanal A, Ize B, et al. (2001) Translocation of jellyfish green fluorescent protein via the Tat system of Escherichia coli and change of its periplasmic localization in response to osmotic up-shock. The Journal of biological chemistry 276:8159-8164.
42. Cava F, de Pedro MA, Blas-Galindo E, Waldo GS, Westblade LF, et al. (2008) Expression and use of superfolder green fluorescent protein at high temperatures in vivo: a tool to study extreme thermophile biology. Environmental microbiology 10: 605-613. (Pubitemid 351160902)
43. Uehara T, Parzych KR, Dinh T, Bernhardt TG (2010) Daughter cell separation is controlled by cytokinetic ring-activated cell wall hydrolysis. The EMBO journal 29: 1412-1422.
44. Potluri L, Karczmarek A, Verheul J, Piette A, Wilkin JM, et al. (2010) Septal and lateral wall localization of PBP5, the major D,D-carboxypeptidase of Escherichia coli, requires substrate recognition and membrane attachment. Molecular Microbiology 77: 300-323.
45. Paradis-Bleau C, Markovski M, Uehara T, Lupoli TJ, Walker S, et al.(2010) Lipoprotein cofactors located in the outer membrane activate bacterial cell wall polymerases. Cell 143: 1110-1120.
46. Lee HC, Bernstein HD (2001) The targeting pathway of Escherichia coli presecretory and integral membrane proteins is specified by the hydrophobicity of the targeting signal. Proceedings of the National Academy of Sciences of the United States of America 98: 3471-3476. (Pubitemid 32220869)
47. Royant A, Noirclerc-Savoye M (2011) Stabilizing role of glutamic acid 222 in the structure of Enhanced Green Fluorescent Protein. Journal of structural biology 174: 385-390.
48. Miot M, Betton JM (2004) Protein quality control in the bacterial periplasm. Microbial cell factories 3: 4.
49. Peters NT, Dinh T, Bernhardt TG (2011) A fail-safe mechanism in the septal ring assembly pathway generated by the sequential recruitment of cell separation amidases and their activators. Journal of bacteriology 193: 4973-4983.
50. Thie H, Schirrmann T, Paschke M, Dubel S, Hust M (2008) SRP and Sec pathway leader peptides for antibody phage display and antibody fragment production in E. coli. N Biotechnol 25: 49-54. (Pubitemid 351713600)