-
1
-
-
0033647231
-
Toxoplasma gondii: from animals to humans
-
0020-7519 (Print) Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S. Review, 3109627, 11113252
-
Tenter AM, Heckeroth AR, Weiss LM. Toxoplasma gondii: from animals to humans. Int J Parasitol 2000, 30(12-13):1217-1258. 0020-7519 (Print) Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S. Review, 3109627, 11113252.
-
(2000)
Int J Parasitol
, vol.30
, Issue.12-13
, pp. 1217-1258
-
-
Tenter, A.M.1
Heckeroth, A.R.2
Weiss, L.M.3
-
2
-
-
43849113435
-
High prevalence and abundant atypical genotypes of Toxoplasma gondii isolated from lambs destined for human consumption in the USA
-
doi:10.1016/j.ijpara.2007.11.012
-
Dubey JP, Sundar N, Hill D, Velmurugan GV, Bandini LA, Kwok OCH, Majumdar D, Su C. High prevalence and abundant atypical genotypes of Toxoplasma gondii isolated from lambs destined for human consumption in the USA. Int J Parasitol 2008, 38(8-9):999-1006. doi:10.1016/j.ijpara.2007.11.012.
-
(2008)
Int J Parasitol
, vol.38
, Issue.8-9
, pp. 999-1006
-
-
Dubey, J.P.1
Sundar, N.2
Hill, D.3
Velmurugan, G.V.4
Bandini, L.A.5
Kwok, O.C.H.6
Majumdar, D.7
Su, C.8
-
3
-
-
38549128700
-
ToxoDB: an integrated Toxoplasma gondii database resource
-
Database issue
-
Gajria B, Bahl A, Brestelli J, Dommer J, Fischer S, Gao X, Heiges M, Iodice J, Kissinger JC, Mackey AJ, Pinney DF, Roos DS, Stoeckert JCJ, Wang H, Brunk BP. ToxoDB: an integrated Toxoplasma gondii database resource. Nucleic Acids Res 2008, 36(Database issue):553-556.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 553-556
-
-
Gajria, B.1
Bahl, A.2
Brestelli, J.3
Dommer, J.4
Fischer, S.5
Gao, X.6
Heiges, M.7
Iodice, J.8
Kissinger, J.C.9
Mackey, A.J.10
Pinney, D.F.11
Roos, D.S.12
Stoeckert, J.C.J.13
Wang, H.14
Brunk, B.P.15
-
4
-
-
21144455796
-
Composite genome map and recombination parameters derived from three archetypal lineages of Toxoplasma gondii
-
10.1093/nar/gki604, 1137028, 15911631
-
Khan A, Taylor S, Su C, Mackey AJ, Boyle J, Cole R, Glover D, Tang K, Paulsen IT, Berriman M, Boothroyd JC, Pfefferkorn ER, Dubey JP, Ajioka JW, Roos DS, Wootton JC, Sibley LD. Composite genome map and recombination parameters derived from three archetypal lineages of Toxoplasma gondii. Nucleic Acids Res 2005, 33(9):2980-2992. 10.1093/nar/gki604, 1137028, 15911631.
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.9
, pp. 2980-2992
-
-
Khan, A.1
Taylor, S.2
Su, C.3
Mackey, A.J.4
Boyle, J.5
Cole, R.6
Glover, D.7
Tang, K.8
Paulsen, I.T.9
Berriman, M.10
Boothroyd, J.C.11
Pfefferkorn, E.R.12
Dubey, J.P.13
Ajioka, J.W.14
Roos, D.S.15
Wootton, J.C.16
Sibley, L.D.17
-
5
-
-
84861207409
-
Comparative genomics of the apicomplexan parasites Toxoplasma gondii and Neospora caninum: Coccidia differing in host range and transmission strategy
-
Reid AJ, Vermont SJ, Cotton JA, Harris D, Hill-Cawthorne GA, Konen-Waisman S, Latham SM, Mourier T, Norton R, Quail MA, Sanders M, Shanmugam D, Sohal A, Wasmuth JD, Brunk B, Grigg ME, Howard JC, Parkinson J, Roos DS, Trees AJ, Berriman M, Pain A, Wastling JM. Comparative genomics of the apicomplexan parasites Toxoplasma gondii and Neospora caninum: Coccidia differing in host range and transmission strategy. PLoS Pathog 2012, 8(3):1002567.
-
(2012)
PLoS Pathog
, vol.8
, Issue.3
, pp. 1002567
-
-
Reid, A.J.1
Vermont, S.J.2
Cotton, J.A.3
Harris, D.4
Hill-Cawthorne, G.A.5
Konen-Waisman, S.6
Latham, S.M.7
Mourier, T.8
Norton, R.9
Quail, M.A.10
Sanders, M.11
Shanmugam, D.12
Sohal, A.13
Wasmuth, J.D.14
Brunk, B.15
Grigg, M.E.16
Howard, J.C.17
Parkinson, J.18
Roos, D.S.19
Trees, A.J.20
Berriman, M.21
Pain, A.22
Wastling, J.M.23
more..
-
6
-
-
0034610814
-
The language of covalent histone modifications
-
10.1038/47412, 10638745
-
Strahl BD, Allis CD. The language of covalent histone modifications. Nature 2000, 403(6765):41-45. 10.1038/47412, 10638745.
-
(2000)
Nature
, vol.403
, Issue.6765
, pp. 41-45
-
-
Strahl, B.D.1
Allis, C.D.2
-
7
-
-
34347334624
-
Epigenomic modifications predict active promoters and gene structure in Toxoplasma gondii
-
Gissot M, Kelly KA, Ajioka JW, Greally JM, Kim K. Epigenomic modifications predict active promoters and gene structure in Toxoplasma gondii. PLoS Pathog 2007, 3(6):77.
-
(2007)
PLoS Pathog
, vol.3
, Issue.6
, pp. 77
-
-
Gissot, M.1
Kelly, K.A.2
Ajioka, J.W.3
Greally, J.M.4
Kim, K.5
-
8
-
-
34547890643
-
SET8-mediated methylations of histone H4 lysine 20 mark silent heterochromatic domains in apicomplexan genomes
-
10.1128/MCB.00482-07, 1952134, 17562855
-
Sautel CF, Cannella D, Bastien O, Kieffer S, Aldebert D, Garin J, Tardieux I, Belrhali H, Hakimi MA. SET8-mediated methylations of histone H4 lysine 20 mark silent heterochromatic domains in apicomplexan genomes. Mol Cell Biol 2007, 27(16):5711-5724. 10.1128/MCB.00482-07, 1952134, 17562855.
-
(2007)
Mol Cell Biol
, vol.27
, Issue.16
, pp. 5711-5724
-
-
Sautel, C.F.1
Cannella, D.2
Bastien, O.3
Kieffer, S.4
Aldebert, D.5
Garin, J.6
Tardieux, I.7
Belrhali, H.8
Hakimi, M.A.9
-
9
-
-
77953807039
-
Chromatin modifications: implications in the regulation of gene expression in Toxoplasma gondii
-
doi:10.1111/j.1462-5822.2010.01446.x, 10.1111/j.1462-5822.2010.01446.x, 20109158
-
Bougdour A, Braun L, Cannella D, Hakimi M-A. Chromatin modifications: implications in the regulation of gene expression in Toxoplasma gondii. Cell Microbiol 2010, 12(4):413-423. doi:10.1111/j.1462-5822.2010.01446.x, 10.1111/j.1462-5822.2010.01446.x, 20109158.
-
(2010)
Cell Microbiol
, vol.12
, Issue.4
, pp. 413-423
-
-
Bougdour, A.1
Braun, L.2
Cannella, D.3
Hakimi, M.-A.4
-
10
-
-
84857946133
-
Toxoplasma gondii chromodomain protein 1 binds to heterochromatin and colocalises with centromeres and telomeres at the nuclear periphery
-
Gissot M, Walker R, Delhaye S, Huot L, Hot D, Tomavo S. Toxoplasma gondii chromodomain protein 1 binds to heterochromatin and colocalises with centromeres and telomeres at the nuclear periphery. PLoS One 2012, 7(3):32671.
-
(2012)
PLoS One
, vol.7
, Issue.3
, pp. 32671
-
-
Gissot, M.1
Walker, R.2
Delhaye, S.3
Huot, L.4
Hot, D.5
Tomavo, S.6
-
11
-
-
0242407193
-
Phylogenomics of the nucleosome
-
10.1038/nsb996, 14583738
-
Malik HS, Henikoff S. Phylogenomics of the nucleosome. Nat Struct Biol 2003, 10(11):882-891. 10.1038/nsb996, 14583738.
-
(2003)
Nat Struct Biol
, vol.10
, Issue.11
, pp. 882-891
-
-
Malik, H.S.1
Henikoff, S.2
-
12
-
-
33744735076
-
Toxoplasma gondii has two lineages of histones 2b (H2B) with different expression profiles
-
10.1016/j.molbiopara.2006.03.005, 16621068
-
Dalmasso MC, Echeverria PC, Zappia MP, Hellman U, Dubremetz JF, Angel SO. Toxoplasma gondii has two lineages of histones 2b (H2B) with different expression profiles. Mol Biochem Parasitol 2006, 148(1):103-107. 10.1016/j.molbiopara.2006.03.005, 16621068.
-
(2006)
Mol Biochem Parasitol
, vol.148
, Issue.1
, pp. 103-107
-
-
Dalmasso, M.C.1
Echeverria, P.C.2
Zappia, M.P.3
Hellman, U.4
Dubremetz, J.F.5
Angel, S.O.6
-
13
-
-
84861647319
-
A unified phylogeny-based nomenclature for histone variants
-
Talbert PB, Ahmad K, Almouzni G, Ausio J, Berger F, Bhalla PL, Bonner WM, Cande WZ, Chadwick BP, Chan SW, Cross GA, Cui L, Dimitrov SI, Doenecke D, Eirin-Lopez JM, Gorovsky MA, Hake SB, Hamkalo BA, Holec S, Jacobsen SE, Kamieniarz K, Khochbin S, Ladurner AG, Landsman D, Latham JA, Loppin B, Malik HS, Marzluff WF, Pehrson JR, Postberg J, et al. A unified phylogeny-based nomenclature for histone variants. Epigenet Chromatin 2012, 5:7.
-
(2012)
Epigenet Chromatin
, vol.5
, pp. 7
-
-
Talbert, P.B.1
Ahmad, K.2
Almouzni, G.3
Ausio, J.4
Berger, F.5
Bhalla, P.L.6
Bonner, W.M.7
Cande, W.Z.8
Chadwick, B.P.9
Chan, S.W.10
Cross, G.A.11
Cui, L.12
Dimitrov, S.I.13
Doenecke, D.14
Eirin-Lopez, J.M.15
Gorovsky, M.A.16
Hake, S.B.17
Hamkalo, B.A.18
Holec, S.19
Jacobsen, S.E.20
Kamieniarz, K.21
Khochbin, S.22
Ladurner, A.G.23
Landsman, D.24
Latham, J.A.25
Loppin, B.26
Malik, H.S.27
Marzluff, W.F.28
Pehrson, J.R.29
Postberg, J.30
more..
-
14
-
-
68949196209
-
Toxoplasma H2A variants reveal novel insights into nucleosome composition and functions for this histone family
-
doi:10.1016/j.jmb.2009.07.017, 10.1016/j.jmb.2009.07.017, 2734877, 19607843
-
Dalmasso MC, Onyango DO, Naguleswaran A, Sullivan WJ, Angel SO. Toxoplasma H2A variants reveal novel insights into nucleosome composition and functions for this histone family. J Mol Biol 2009, 392(1):33-47. doi:10.1016/j.jmb.2009.07.017, 10.1016/j.jmb.2009.07.017, 2734877, 19607843.
-
(2009)
J Mol Biol
, vol.392
, Issue.1
, pp. 33-47
-
-
Dalmasso, M.C.1
Onyango, D.O.2
Naguleswaran, A.3
Sullivan, W.J.4
Angel, S.O.5
-
15
-
-
79955413557
-
Centromeres: unique chromatin structures that drive chromosome segregation
-
10.1038/nrm3107, 3288958, 21508988
-
Verdaasdonk JS, Bloom K. Centromeres: unique chromatin structures that drive chromosome segregation. Nat Rev Mol Cell Biol 2011, 12(5):320-332. 10.1038/nrm3107, 3288958, 21508988.
-
(2011)
Nat Rev Mol Cell Biol
, vol.12
, Issue.5
, pp. 320-332
-
-
Verdaasdonk, J.S.1
Bloom, K.2
-
16
-
-
15744399172
-
Centromeric chromatin: what makes it unique?
-
Henikoff, Steven Dalal, Yamini England Curr Opin Genet Dev. 2005 Apr;15(2):177-84., 10.1016/j.gde.2005.01.004, 15797200
-
Henikoff S, Dalal Y. Centromeric chromatin: what makes it unique?. Curr Opin Genet Dev 2005, 15(2):177-184. Henikoff, Steven Dalal, Yamini England Curr Opin Genet Dev. 2005 Apr;15(2):177-84., 10.1016/j.gde.2005.01.004, 15797200.
-
(2005)
Curr Opin Genet Dev
, vol.15
, Issue.2
, pp. 177-184
-
-
Henikoff, S.1
Dalal, Y.2
-
17
-
-
36749014473
-
Telomeric position effect: from the yeast paradigm to human pathologies?
-
10.1016/j.biochi.2007.07.022, 17868970
-
Ottaviani A, Gilson E, Magdinier F. Telomeric position effect: from the yeast paradigm to human pathologies?. Biochimie 2008, 90(1):93-107. 10.1016/j.biochi.2007.07.022, 17868970.
-
(2008)
Biochimie
, vol.90
, Issue.1
, pp. 93-107
-
-
Ottaviani, A.1
Gilson, E.2
Magdinier, F.3
-
18
-
-
0033522444
-
Limitations of silencing at native yeast telomeres
-
10.1093/emboj/18.9.2538, 1171335, 10228167
-
Pryde FE, Louis EJ. Limitations of silencing at native yeast telomeres. EMBO J 1999, 18(9):2538-2550. 10.1093/emboj/18.9.2538, 1171335, 10228167.
-
(1999)
EMBO J
, vol.18
, Issue.9
, pp. 2538-2550
-
-
Pryde, F.E.1
Louis, E.J.2
-
19
-
-
0035812808
-
Replication dynamics of the yeast genome
-
10.1126/science.294.5540.115, 11588253
-
Raghuraman MK, Winzeler EA, Collingwood D, Hunt S, Wodicka L, Conway A, Lockhart DJ, Davis RW, Brewer BJ, Fangman WL. Replication dynamics of the yeast genome. Science 2001, 294(5540):115-121. 10.1126/science.294.5540.115, 11588253.
-
(2001)
Science
, vol.294
, Issue.5540
, pp. 115-121
-
-
Raghuraman, M.K.1
Winzeler, E.A.2
Collingwood, D.3
Hunt, S.4
Wodicka, L.5
Conway, A.6
Lockhart, D.J.7
Davis, R.W.8
Brewer, B.J.9
Fangman, W.L.10
-
20
-
-
77952340143
-
Replication timing of human telomeres is chromosome arm-specific, influenced by subtelomeric structures and connected to nuclear localization
-
doi:10.1371/journal.pgen.1000920
-
Arnoult N, Schluth-Bolard C, Letessier A, Drascovic I, Bouarich-Bourimi R, Campisi J, Kim S-H, Boussouar A, Ottaviani A, Magdinier F, Gilson E, Londoño-Vallejo A. Replication timing of human telomeres is chromosome arm-specific, influenced by subtelomeric structures and connected to nuclear localization. PLoS Genet 2010, 6(4):1000920. doi:10.1371/journal.pgen.1000920.
-
(2010)
PLoS Genet
, vol.6
, Issue.4
, pp. 1000920
-
-
Arnoult, N.1
Schluth-Bolard, C.2
Letessier, A.3
Drascovic, I.4
Bouarich-Bourimi, R.5
Campisi, J.6
Kim, S.-H.7
Boussouar, A.8
Ottaviani, A.9
Magdinier, F.10
Gilson, E.11
Londoño-Vallejo, A.12
-
21
-
-
0037019025
-
Control of replication timing by a transcriptional silencer
-
10.1016/S0960-9822(02)00871-0, 12062049
-
Zappulla DC, Sternglanz R, Leatherwood J. Control of replication timing by a transcriptional silencer. Curr Biol 2002, 12(11):869-875. 10.1016/S0960-9822(02)00871-0, 12062049.
-
(2002)
Curr Biol
, vol.12
, Issue.11
, pp. 869-875
-
-
Zappulla, D.C.1
Sternglanz, R.2
Leatherwood, J.3
-
22
-
-
0033613096
-
Position effect of human telomeric repeats on replication timing
-
10.1073/pnas.96.20.11434, 18051, 10500194
-
Ofir R, Wong AC, McDermid HE, Skorecki KL, Selig S. Position effect of human telomeric repeats on replication timing. Proc Natl Acad Sci USA 1999, 96(20):11434-11439. 10.1073/pnas.96.20.11434, 18051, 10500194.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, Issue.20
, pp. 11434-11439
-
-
Ofir, R.1
Wong, A.C.2
McDermid, H.E.3
Skorecki, K.L.4
Selig, S.5
-
23
-
-
69249208461
-
Identification of a perinuclear positioning element in human subtelomeres that requires A-type lamins and CTCF
-
doi:10.1038/emboj.2009.201, 10.1038/emboj.2009.201, 2735173, 19644448
-
Ottaviani A, Schluth-Bolard C, Rival-Gervier S, Boussouar A, Rondier D, Foerster AM, Morere J, Bauwens S, Gazzo S, Callet-Bauchu E, Gilson E, Magdinier F. Identification of a perinuclear positioning element in human subtelomeres that requires A-type lamins and CTCF. EMBO J 2009, 28(16):2428-2436. doi:10.1038/emboj.2009.201, 10.1038/emboj.2009.201, 2735173, 19644448.
-
(2009)
EMBO J
, vol.28
, Issue.16
, pp. 2428-2436
-
-
Ottaviani, A.1
Schluth-Bolard, C.2
Rival-Gervier, S.3
Boussouar, A.4
Rondier, D.5
Foerster, A.M.6
Morere, J.7
Bauwens, S.8
Gazzo, S.9
Callet-Bauchu, E.10
Gilson, E.11
Magdinier, F.12
-
24
-
-
0037245489
-
Why are parasite contingency genes often associated with telomeres?
-
10.1016/S0020-7519(02)00247-3, 12547344
-
Barry JD, Ginger ML, Burton P, McCulloch R. Why are parasite contingency genes often associated with telomeres?. Int J Parasitol 2003, 33(1):29-45. 10.1016/S0020-7519(02)00247-3, 12547344.
-
(2003)
Int J Parasitol
, vol.33
, Issue.1
, pp. 29-45
-
-
Barry, J.D.1
Ginger, M.L.2
Burton, P.3
McCulloch, R.4
-
25
-
-
27944481176
-
Histone-modifying complexes regulate gene expression pertinent to the differentiation of the protozoan parasite Toxoplasma gondii
-
10.1128/MCB.25.23.10301-10314.2005, 1291236, 16287846
-
Saksouk N, Bhatti MM, Kieffer S, Smith AT, Musset K, Garin J, Sullivan JWJ, Cesbron-Delauw MF, Hakimi MA. Histone-modifying complexes regulate gene expression pertinent to the differentiation of the protozoan parasite Toxoplasma gondii. Mol Cell Biol 2005, 25(23):10301-10314. 10.1128/MCB.25.23.10301-10314.2005, 1291236, 16287846.
-
(2005)
Mol Cell Biol
, vol.25
, Issue.23
, pp. 10301-10314
-
-
Saksouk, N.1
Bhatti, M.M.2
Kieffer, S.3
Smith, A.T.4
Musset, K.5
Garin, J.6
Sullivan, J.W.J.7
Cesbron-Delauw, M.F.8
Hakimi, M.A.9
-
26
-
-
79952759696
-
Toxoplasma gondii sequesters centromeres to a specific nuclear region throughout the cell cycle
-
doi:10.1073/pnas.1006741108
-
Brooks CF, Francia ME, Gissot M, Croken MM, Kim K, Striepen B. Toxoplasma gondii sequesters centromeres to a specific nuclear region throughout the cell cycle. Proc Natl Acad Sci USA 2011, 108(9):doi:10.1073/pnas.1006741108.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, Issue.9
-
-
Brooks, C.F.1
Francia, M.E.2
Gissot, M.3
Croken, M.M.4
Kim, K.5
Striepen, B.6
-
27
-
-
0033972531
-
Genomic organisation and chromatin structure of Plasmodium falciparum chromosome ends
-
10.1016/S0166-6851(99)00199-1, 10743621
-
Figueiredo LM, Pirrit LA, Scherf A. Genomic organisation and chromatin structure of Plasmodium falciparum chromosome ends. Mol Biochem Parasitol 2000, 106(1):169-174. 10.1016/S0166-6851(99)00199-1, 10743621.
-
(2000)
Mol Biochem Parasitol
, vol.106
, Issue.1
, pp. 169-174
-
-
Figueiredo, L.M.1
Pirrit, L.A.2
Scherf, A.3
-
28
-
-
0034905102
-
Plasmodium telomeres: a pathogen's perspective
-
10.1016/S1369-5274(00)00227-7, 11495803
-
Scherf A, Figueiredo LM, Freitas-Junior LH. Plasmodium telomeres: a pathogen's perspective. Curr Opin Microbiol 2001, 4(4):409-414. 10.1016/S1369-5274(00)00227-7, 11495803.
-
(2001)
Curr Opin Microbiol
, vol.4
, Issue.4
, pp. 409-414
-
-
Scherf, A.1
Figueiredo, L.M.2
Freitas-Junior, L.H.3
-
29
-
-
77954575512
-
Telomeric heterochromatin in Plasmodium falciparum
-
2821646, 20169127
-
Hernandez-Rivas R, Perez-Toledo K, Herrera Solorio AM, Delgadillo DM, Vargas M. Telomeric heterochromatin in Plasmodium falciparum. J Biomed Biotechnol 2010, 2010:290501. 2821646, 20169127.
-
(2010)
J Biomed Biotechnol
, vol.2010
, pp. 290501
-
-
Hernandez-Rivas, R.1
Perez-Toledo, K.2
Herrera Solorio, A.M.3
Delgadillo, D.M.4
Vargas, M.5
-
30
-
-
60649095351
-
Genome-wide analysis of heterochromatin associates clonally variant gene regulation with perinuclear repressive centers in malaria parasites
-
10.1016/j.chom.2008.12.012, 19218088
-
Lopez-Rubio JJ, Mancio-Silva L, Scherf A. Genome-wide analysis of heterochromatin associates clonally variant gene regulation with perinuclear repressive centers in malaria parasites. Cell Host Microbe 2009, 5(2):179-190. 10.1016/j.chom.2008.12.012, 19218088.
-
(2009)
Cell Host Microbe
, vol.5
, Issue.2
, pp. 179-190
-
-
Lopez-Rubio, J.J.1
Mancio-Silva, L.2
Scherf, A.3
-
31
-
-
20144389331
-
Telomeric heterochromatin propagation and histone acetylation control mutually exclusive expression of antigenic variation genes in malaria parasites
-
10.1016/j.cell.2005.01.037, 15820676
-
Freitas-Junior LH, Hernandez-Rivas R, Ralph SA, Montiel-Condado D, Ruvalcaba-Salazar OK, Rojas-Meza AP, Mancio-Silva L, Leal-Silvestre RJ, Gontijo AM, Shorte S, Scherf A. Telomeric heterochromatin propagation and histone acetylation control mutually exclusive expression of antigenic variation genes in malaria parasites. Cell 2005, 121(1):25-36. 10.1016/j.cell.2005.01.037, 15820676.
-
(2005)
Cell
, vol.121
, Issue.1
, pp. 25-36
-
-
Freitas-Junior, L.H.1
Hernandez-Rivas, R.2
Ralph, S.A.3
Montiel-Condado, D.4
Ruvalcaba-Salazar, O.K.5
Rojas-Meza, A.P.6
Mancio-Silva, L.7
Leal-Silvestre, R.J.8
Gontijo, A.M.9
Shorte, S.10
Scherf, A.11
-
32
-
-
0035504448
-
Comparative sequencing of a multicopy subtelomeric region containing olfactory receptor genes reveals multiple interactions between non-homologous chromosomes
-
10.1093/hmg/10.21.2363, 11689483
-
Mefford HC, Linardopoulou E, Coil D, van den Engh G, Trask BJ. Comparative sequencing of a multicopy subtelomeric region containing olfactory receptor genes reveals multiple interactions between non-homologous chromosomes. Hum Mol Genet 2001, 10(21):2363-2372. 10.1093/hmg/10.21.2363, 11689483.
-
(2001)
Hum Mol Genet
, vol.10
, Issue.21
, pp. 2363-2372
-
-
Mefford, H.C.1
Linardopoulou, E.2
Coil, D.3
van den Engh, G.4
Trask, B.J.5
-
33
-
-
0036244955
-
The complex structure and dynamic evolution of human subtelomeres
-
10.1038/nrg727, 11836503
-
Mefford HC, Trask BJ. The complex structure and dynamic evolution of human subtelomeres. Nat Rev Genet 2002, 3(2):91-102. 10.1038/nrg727, 11836503.
-
(2002)
Nat Rev Genet
, vol.3
, Issue.2
, pp. 91-102
-
-
Mefford, H.C.1
Trask, B.J.2
-
34
-
-
0026344816
-
Mitochondrial-like DNA sequences flanked by direct and inverted repeats in the nuclear genome of Toxoplasma gondii
-
10.1016/0022-2836(91)90494-Q, 1660924
-
Ossorio PN, Sibley LD, Boothroyd JC. Mitochondrial-like DNA sequences flanked by direct and inverted repeats in the nuclear genome of Toxoplasma gondii. J Mol Biol 1991, 222(3):525-536. 10.1016/0022-2836(91)90494-Q, 1660924.
-
(1991)
J Mol Biol
, vol.222
, Issue.3
, pp. 525-536
-
-
Ossorio, P.N.1
Sibley, L.D.2
Boothroyd, J.C.3
-
35
-
-
0029654258
-
A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis
-
10.1016/0378-1119(95)00657-5, 8566758
-
Sonnhammer EL, Durbin R. A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis. Gene 1995, 167(1-2):1-10. 10.1016/0378-1119(95)00657-5, 8566758.
-
(1995)
Gene
, vol.167
, Issue.1-2
, pp. 1-10
-
-
Sonnhammer, E.L.1
Durbin, R.2
-
36
-
-
0033555906
-
Tandem repeats finder: a program to analyze DNA sequences
-
10.1093/nar/27.2.573, 148217, 9862982
-
Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res 1999, 27(2):573-580. 10.1093/nar/27.2.573, 148217, 9862982.
-
(1999)
Nucleic Acids Res
, vol.27
, Issue.2
, pp. 573-580
-
-
Benson, G.1
-
37
-
-
0033120606
-
Arrays of repetitive DNA elements in the largest chromosomes of Toxoplasma gondii
-
Matrajt M, Angel SO, Pszenny V, Guarnera E, Roos DS, Garberi JC. Arrays of repetitive DNA elements in the largest chromosomes of Toxoplasma gondii. Genome 1999, 42(2):265-269.
-
(1999)
Genome
, vol.42
, Issue.2
, pp. 265-269
-
-
Matrajt, M.1
Angel, S.O.2
Pszenny, V.3
Guarnera, E.4
Roos, D.S.5
Garberi, J.C.6
-
38
-
-
2342491554
-
Structure analysis of two Toxoplasma gondii and Neospora caninum satellite DNA families and evolution of their common monomeric sequence
-
10.1007/s00239-003-2578-3, 15170259
-
Clemente M, de Miguel N, Lia VV, Matrajt M, Angel SO. Structure analysis of two Toxoplasma gondii and Neospora caninum satellite DNA families and evolution of their common monomeric sequence. J Mol Evol 2004, 58(5):557-567. 10.1007/s00239-003-2578-3, 15170259.
-
(2004)
J Mol Evol
, vol.58
, Issue.5
, pp. 557-567
-
-
Clemente, M.1
de Miguel, N.2
Lia, V.V.3
Matrajt, M.4
Angel, S.O.5
-
39
-
-
0033982071
-
Characterisation of a novel interspersed Toxoplasma gondii DNA repeat with potential uses for PCR diagnosis and PCR-RFLP analysis
-
10.1111/j.1574-6968.2000.tb08984.x, 10689160
-
Echeverria PC, Rojas PA, Martin V, Guarnera EA, Pszenny V, Angel SO. Characterisation of a novel interspersed Toxoplasma gondii DNA repeat with potential uses for PCR diagnosis and PCR-RFLP analysis. FEMS Microbiol Lett 2000, 184(1):23-27. 10.1111/j.1574-6968.2000.tb08984.x, 10689160.
-
(2000)
FEMS Microbiol Lett
, vol.184
, Issue.1
, pp. 23-27
-
-
Echeverria, P.C.1
Rojas, P.A.2
Martin, V.3
Guarnera, E.A.4
Pszenny, V.5
Angel, S.O.6
-
40
-
-
77954063506
-
A complex small RNA repertoire is generated by a plant/fungal-like machinery and effected by a metazoan-like Argonaute in the single-cell human parasite Toxoplasma gondii
-
doi:10.1371/journal.ppat.1000920
-
Braun L, Cannella D, Ortet P, Barakat M, Sautel CF, Kieffer S, Garin J, Bastien O, Voinnet O, Hakimi M-A. A complex small RNA repertoire is generated by a plant/fungal-like machinery and effected by a metazoan-like Argonaute in the single-cell human parasite Toxoplasma gondii. PLoS Pathog 2010, 6(5):1000920. doi:10.1371/journal.ppat.1000920.
-
(2010)
PLoS Pathog
, vol.6
, Issue.5
, pp. 1000920
-
-
Braun, L.1
Cannella, D.2
Ortet, P.3
Barakat, M.4
Sautel, C.F.5
Kieffer, S.6
Garin, J.7
Bastien, O.8
Voinnet, O.9
Hakimi, M.-A.10
-
41
-
-
0028886480
-
Toxoplasma gondii comprises three clonal lineages: correlation of parasite genotype with human disease
-
10.1093/infdis/172.6.1561, 7594717
-
Howe DK, Sibley LD. Toxoplasma gondii comprises three clonal lineages: correlation of parasite genotype with human disease. J Infect Dis 1995, 172(6):1561-1566. 10.1093/infdis/172.6.1561, 7594717.
-
(1995)
J Infect Dis
, vol.172
, Issue.6
, pp. 1561-1566
-
-
Howe, D.K.1
Sibley, L.D.2
-
42
-
-
0022589865
-
Codon usage and gene expression
-
10.1093/nar/14.7.3075, 339722, 2938078
-
Holm L. Codon usage and gene expression. Nucleic Acids Res 1986, 14(7):3075-3087. 10.1093/nar/14.7.3075, 339722, 2938078.
-
(1986)
Nucleic Acids Res
, vol.14
, Issue.7
, pp. 3075-3087
-
-
Holm, L.1
-
43
-
-
0031851853
-
GCUA: general codon usage analysis
-
10.1093/bioinformatics/14.4.372, 9632833
-
McInerney JO. GCUA: general codon usage analysis. Bioinformatics 1998, 14(4):372-373. 10.1093/bioinformatics/14.4.372, 9632833.
-
(1998)
Bioinformatics
, vol.14
, Issue.4
, pp. 372-373
-
-
McInerney, J.O.1
-
44
-
-
14544277543
-
Variation in the strength of selected codon usage bias among bacteria
-
10.1093/nar/gki242, 549432, 15728743
-
Sharp PM, Bailes E, Grocock RJ, Peden JF, Sockett RE. Variation in the strength of selected codon usage bias among bacteria. Nucleic Acids Res 2005, 33(4):1141-1153. 10.1093/nar/gki242, 549432, 15728743.
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.4
, pp. 1141-1153
-
-
Sharp, P.M.1
Bailes, E.2
Grocock, R.J.3
Peden, J.F.4
Sockett, R.E.5
-
45
-
-
59149091773
-
Comparison of correspondence analysis methods for synonymous codon usage in bacteria
-
10.1093/dnares/dsn028, 2608848, 18940873
-
Suzuki H, Brown CJ, Forney LJ, Top EM. Comparison of correspondence analysis methods for synonymous codon usage in bacteria. DNA Res 2008, 15(6):357-365. 10.1093/dnares/dsn028, 2608848, 18940873.
-
(2008)
DNA Res
, vol.15
, Issue.6
, pp. 357-365
-
-
Suzuki, H.1
Brown, C.J.2
Forney, L.J.3
Top, E.M.4
-
46
-
-
84866115963
-
Telomere length regulates TERRA levels through increased trimethylation of telomeric H3K9 and HP1alpha
-
10.1038/nsmb.2364, 22922742
-
Arnoult N, Van Beneden A, Decottignies A. Telomere length regulates TERRA levels through increased trimethylation of telomeric H3K9 and HP1alpha. Nat Struct Mol Biol 2012, 19(9):948-956. 10.1038/nsmb.2364, 22922742.
-
(2012)
Nat Struct Mol Biol
, vol.19
, Issue.9
, pp. 948-956
-
-
Arnoult, N.1
Van Beneden, A.2
Decottignies, A.3
-
47
-
-
84861229384
-
The telomeric transcriptome: from fission yeast to mammals
-
10.1016/j.biocel.2012.03.021, 22504286
-
Bah A, Azzalin CM. The telomeric transcriptome: from fission yeast to mammals. Int J Biochem Cell Biol 2012, 44(7):1055-1059. 10.1016/j.biocel.2012.03.021, 22504286.
-
(2012)
Int J Biochem Cell Biol
, vol.44
, Issue.7
, pp. 1055-1059
-
-
Bah, A.1
Azzalin, C.M.2
-
48
-
-
47649100089
-
Differential association of Orc1 and Sir2 proteins to telomeric domains in Plasmodium falciparum
-
Mancio-Silva L, Rojas-Meza AP, Vargas M, Scherf A, Hernandez-Rivas R. Differential association of Orc1 and Sir2 proteins to telomeric domains in Plasmodium falciparum. J Cell Sci 2008, 121(Pt 12):2046-2053.
-
(2008)
J Cell Sci
, vol.121
, Issue.PART 12
, pp. 2046-2053
-
-
Mancio-Silva, L.1
Rojas-Meza, A.P.2
Vargas, M.3
Scherf, A.4
Hernandez-Rivas, R.5
-
49
-
-
77649264247
-
A major role for the Plasmodium falciparum ApiAP2 protein PfSIP2 in chromosome end biology
-
doi:10.1371/journal.ppat.1000784
-
Flueck C, Bartfai R, Niederwieser I, Witmer K, Alako BTF, Moes S, Bozdech Z, Jenoe P, Stunnenberg HG, Voss TS. A major role for the Plasmodium falciparum ApiAP2 protein PfSIP2 in chromosome end biology. PLoS Pathog 2010, 6(2):1000784. doi:10.1371/journal.ppat.1000784.
-
(2010)
PLoS Pathog
, vol.6
, Issue.2
, pp. 1000784
-
-
Flueck, C.1
Bartfai, R.2
Niederwieser, I.3
Witmer, K.4
Alako, B.T.F.5
Moes, S.6
Bozdech, Z.7
Jenoe, P.8
Stunnenberg, H.G.9
Voss, T.S.10
-
50
-
-
69849104275
-
TERRA: telomeric repeat-containing RNA
-
10.1038/emboj.2009.166, 2722245, 19629047
-
Luke B, Lingner J. TERRA: telomeric repeat-containing RNA. EMBO J 2009, 28(17):2503-2510. 10.1038/emboj.2009.166, 2722245, 19629047.
-
(2009)
EMBO J
, vol.28
, Issue.17
, pp. 2503-2510
-
-
Luke, B.1
Lingner, J.2
-
51
-
-
77956332686
-
Integrative genomic approaches highlight a family of parasite-specific kinases that regulate host responses
-
doi:10.1016/j.chom.2010.07.004, 10.1016/j.chom.2010.07.004, 2963626, 20709297
-
Peixoto L, Chen F, Harb OS, Davis PH, Beiting DP, Brownback CS, Ouloguem D, Roos DS. Integrative genomic approaches highlight a family of parasite-specific kinases that regulate host responses. Cell Host Microbe 2010, 8(2):208-218. doi:10.1016/j.chom.2010.07.004, 10.1016/j.chom.2010.07.004, 2963626, 20709297.
-
(2010)
Cell Host Microbe
, vol.8
, Issue.2
, pp. 208-218
-
-
Peixoto, L.1
Chen, F.2
Harb, O.S.3
Davis, P.H.4
Beiting, D.P.5
Brownback, C.S.6
Ouloguem, D.7
Roos, D.S.8
-
52
-
-
37749010818
-
Highly polymorphic family of glycosylphosphatidylinositol-anchored surface antigens with evidence of developmental regulation in Toxoplasma gondii
-
doi:10.1128/IAI.01170-07, 10.1128/IAI.01170-07, 2223667, 17938221
-
Pollard MA, Onatolu KN, Hiller L, Haldar K, Knoll LJ. Highly polymorphic family of glycosylphosphatidylinositol-anchored surface antigens with evidence of developmental regulation in Toxoplasma gondii. Infect Immun 2008, 76(1):103-110. doi:10.1128/IAI.01170-07, 10.1128/IAI.01170-07, 2223667, 17938221.
-
(2008)
Infect Immun
, vol.76
, Issue.1
, pp. 103-110
-
-
Pollard, M.A.1
Onatolu, K.N.2
Hiller, L.3
Haldar, K.4
Knoll, L.J.5
-
53
-
-
1542345731
-
The SRS superfamily of Toxoplasma surface proteins
-
doi:10.1016/j.ijpara.2003.12.004, 10.1016/j.ijpara.2003.12.004, 15003490
-
Calvin J, Cleo Y-FL, Grigg EM. The SRS superfamily of Toxoplasma surface proteins. Int J Parasitol 2004, 34(3):285-296. doi:10.1016/j.ijpara.2003.12.004, 10.1016/j.ijpara.2003.12.004, 15003490.
-
(2004)
Int J Parasitol
, vol.34
, Issue.3
, pp. 285-296
-
-
Calvin, J.1
Cleo, Y.-F.L.2
Grigg, E.M.3
-
54
-
-
84872163992
-
Integrated bioinformatic and targeted deletion analyses of the SRS gene superfamily identify SRS29C as a negative regulator of Toxoplasma virulence
-
doi:10.1128/mBio.00321-12
-
Wasmuth JD, Pszenny V, Haile S, Jansen EM, Gast AT, Sher A, Boyle JP, Boulanger MJ, Parkinson J, Grigg ME. Integrated bioinformatic and targeted deletion analyses of the SRS gene superfamily identify SRS29C as a negative regulator of Toxoplasma virulence. MBio 2012, 3(6). doi:10.1128/mBio.00321-12.
-
(2012)
MBio
, vol.3
, Issue.6
-
-
Wasmuth, J.D.1
Pszenny, V.2
Haile, S.3
Jansen, E.M.4
Gast, A.T.5
Sher, A.6
Boyle, J.P.7
Boulanger, M.J.8
Parkinson, J.9
Grigg, M.E.10
-
55
-
-
84870880579
-
De novo reconstruction of the Toxoplasma gondii transcriptome improves on the current genome annotation and reveals alternatively spliced transcripts and putative long non-coding RNAs
-
doi:10.1186/1471-2164-13-696, 10.1186/1471-2164-13-696, 3543268, 23231500
-
Hassan MA, Melo MB, Haas B, Jensen KDC, Saeij JPJ. De novo reconstruction of the Toxoplasma gondii transcriptome improves on the current genome annotation and reveals alternatively spliced transcripts and putative long non-coding RNAs. BMC Genomics 2012, 13:696. doi:10.1186/1471-2164-13-696, 10.1186/1471-2164-13-696, 3543268, 23231500.
-
(2012)
BMC Genomics
, vol.13
, pp. 696
-
-
Hassan, M.A.1
Melo, M.B.2
Haas, B.3
Jensen, K.D.C.4
Saeij, J.P.J.5
-
56
-
-
0034235915
-
Microsatellite markers and genetic mapping in Plasmodium falciparum
-
10.1016/S0169-4758(00)01676-8, 10858651
-
Ferdig MT, Su XZ. Microsatellite markers and genetic mapping in Plasmodium falciparum. Parasitol Today 2000, 16(7):307-312. 10.1016/S0169-4758(00)01676-8, 10858651.
-
(2000)
Parasitol Today
, vol.16
, Issue.7
, pp. 307-312
-
-
Ferdig, M.T.1
Su, X.Z.2
-
57
-
-
0014302250
-
Separation of B. subtilis DNA into complementary strands. 3 Direct analysis
-
10.1073/pnas.60.3.921, 225140, 4970114
-
Rudner R, Karkas JD, Chargaff E. Separation of B. subtilis DNA into complementary strands. 3 Direct analysis. Proc Natl Acad Sci USA 1968, 60(3):921-922. 10.1073/pnas.60.3.921, 225140, 4970114.
-
(1968)
Proc Natl Acad Sci USA
, vol.60
, Issue.3
, pp. 921-922
-
-
Rudner, R.1
Karkas, J.D.2
Chargaff, E.3
-
58
-
-
33845214633
-
Asymptotically increasing compliance of genomes with Chargaff's second parity rules through inversions and inverted transpositions
-
10.1073/pnas.0605553103, 1635160, 17093051
-
Albrecht-Buehler G. Asymptotically increasing compliance of genomes with Chargaff's second parity rules through inversions and inverted transpositions. Proc Natl Acad Sci USA 2006, 103(47):17828-17833. 10.1073/pnas.0605553103, 1635160, 17093051.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, Issue.47
, pp. 17828-17833
-
-
Albrecht-Buehler, G.1
-
59
-
-
84892874085
-
BLAST Command Line Applications User Manual. National Center for Biotechnology Information (US), (2008)
-
National Center for Biotechnology Information (US). Camacho C, Madden T, Coulouris G, et al. BLAST Command Line Applications User Manual. 2008 Jun 23 [Updated 2013 Mar 25]. In: BLAST Help [Internet]. Bethesda (MD): National Center for Biotechnology Information (US); 2008 Available from
-
Camacho C, Madden T, Ma N, Agarwala R, Morgulis A. BLAST Command Line Applications User Manual. National Center for Biotechnology Information (US), (2008). National Center for Biotechnology Information (US). Camacho C, Madden T, Coulouris G, et al. BLAST Command Line Applications User Manual. 2008 Jun 23 [Updated 2013 Mar 25]. In: BLAST Help [Internet]. Bethesda (MD): National Center for Biotechnology Information (US); 2008-. Available from: [http://www.ncbi.nlm.nih.gov/books/NBK1763/].
-
-
-
Camacho, C.1
Madden, T.2
Ma, N.3
Agarwala, R.4
Morgulis, A.5
-
60
-
-
36549011696
-
WebACT: an online genome comparison suite
-
10.1007/978-1-59745-514-5_4, 17993667
-
James CA, David MA, Stephen DB. WebACT: an online genome comparison suite. Methods Mol Biol 2007, 395:57-74. 10.1007/978-1-59745-514-5_4, 17993667.
-
(2007)
Methods Mol Biol
, vol.395
, pp. 57-74
-
-
James, C.A.1
David, M.A.2
Stephen, D.B.3
-
61
-
-
24044433279
-
ACT: the Artemis Comparison Tool
-
10.1093/bioinformatics/bti553, 15976072
-
Carver TJ, Rutherford KM, Berriman M, Rajandream MA, Barrell BG, Parkhill J. ACT: the Artemis Comparison Tool. Bioinformatics 2005, 21(16):3422-3423. 10.1093/bioinformatics/bti553, 15976072.
-
(2005)
Bioinformatics
, vol.21
, Issue.16
, pp. 3422-3423
-
-
Carver, T.J.1
Rutherford, K.M.2
Berriman, M.3
Rajandream, M.A.4
Barrell, B.G.5
Parkhill, J.6
-
62
-
-
69649109364
-
Circos: an information aesthetic for comparative genomics
-
10.1101/gr.092759.109, 2752132, 19541911
-
Krzywinski M, Schein J, Birol I, Connors J, Gascoyne R, Horsman D, Jones SJ, Marra MA. Circos: an information aesthetic for comparative genomics. Genome Res 2009, 19(9):1639-1645. 10.1101/gr.092759.109, 2752132, 19541911.
-
(2009)
Genome Res
, vol.19
, Issue.9
, pp. 1639-1645
-
-
Krzywinski, M.1
Schein, J.2
Birol, I.3
Connors, J.4
Gascoyne, R.5
Horsman, D.6
Jones, S.J.7
Marra, M.A.8
-
63
-
-
34249879981
-
Correspondence Analysis in Practice, 2nd edn. Interdisciplinary Statistics
-
doi:10.1201/9781420011234
-
Greenacre MJ. Correspondence Analysis in Practice, 2nd edn. Interdisciplinary Statistics. 2007, doi:10.1201/9781420011234. [http://www.crcnetbase.com/doi/book/10.1201/9781420011234].
-
(2007)
-
-
Greenacre, M.J.1
|