-
1
-
-
79960563344
-
Determinants and dynamics of genome accessibility
-
Bell, O., Tiwari, V.K., Thoma, N.H. & Schubeler, D. Determinants and dynamics of genome accessibility. Nat. Rev. Genet. 12, 554-564 (2011).
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 554-564
-
-
Bell, O.1
Tiwari, V.K.2
Thoma, N.H.3
Schubeler, D.4
-
2
-
-
77956879643
-
Evaluating genome-scale approaches to eukaryotic DNA replication
-
Gilbert, D.M. Evaluating genome-scale approaches to eukaryotic DNA replication. Nat. Rev. Genet. 11, 673-684 (2010).
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 673-684
-
-
Gilbert, D.M.1
-
3
-
-
77953808473
-
Next-generation genomics: An integrative approach
-
Hawkins, R.D., Hon, G.C. & Ren, B. Next-generation genomics: an integrative approach. Nat. Rev. Genet. 11, 476-486 (2010).
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 476-486
-
-
Hawkins, R.D.1
Hon, G.C.2
Ren, B.3
-
4
-
-
79953044960
-
Genome-wide transcription factor binding: Beyond direct target regulation
-
MacQuarrie, K.L., Fong, A.P., Morse, R.H. & Tapscott, S.J. Genome-wide transcription factor binding: beyond direct target regulation. Trends Genet. 27, 141-148 (2011).
-
(2011)
Trends Genet.
, vol.27
, pp. 141-148
-
-
MacQuarrie, K.L.1
Fong, A.P.2
Morse, R.H.3
Tapscott, S.J.4
-
5
-
-
84866361701
-
Circuitry and dynamics of human transcription factor regulatory networks
-
Neph, S. et al. Circuitry and dynamics of human transcription factor regulatory networks. Cell 150, 1274-1286 (2012).
-
(2012)
Cell
, vol.150
, pp. 1274-1286
-
-
Neph, S.1
-
6
-
-
78650304236
-
Charting histone modifications and the functional organization of mammalian genomes
-
Zhou, V.W., Goren, A. & Bernstein, B.E. Charting histone modifications and the functional organization of mammalian genomes. Nat. Rev. Genet. 12, 7-18 (2011).
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 7-18
-
-
Zhou, V.W.1
Goren, A.2
Bernstein, B.E.3
-
7
-
-
79955615662
-
The transcriptional and signalling networks of pluripotency
-
Ng, H.H. & Surani, M.A. The transcriptional and signalling networks of pluripotency. Nat. Cell Biol. 13, 490-496 (2011).
-
(2011)
Nat. Cell Biol.
, vol.13
, pp. 490-496
-
-
Ng, H.H.1
Surani, M.A.2
-
8
-
-
79959360046
-
Application of ChIP-Seq and related techniques to the study of immune function
-
Northrup, D.L. & Zhao, K. Application of ChIP-Seq and related techniques to the study of immune function. Immunity 34, 830-842 (2011).
-
(2011)
Immunity
, vol.34
, pp. 830-842
-
-
Northrup, D.L.1
Zhao, K.2
-
9
-
-
79958252915
-
Chromatin connections to pluripotency and cellular reprogramming
-
Orkin, S.H. & Hochedlinger, K. Chromatin connections to pluripotency and cellular reprogramming. Cell 145, 835-850 (2011).
-
(2011)
Cell
, vol.145
, pp. 835-850
-
-
Orkin, S.H.1
Hochedlinger, K.2
-
10
-
-
79952660821
-
Control of the embryonic stem cell state
-
Young, R.A. Control of the embryonic stem cell state. Cell 144, 940-954 (2011).
-
(2011)
Cell
, vol.144
, pp. 940-954
-
-
Young, R.A.1
-
11
-
-
84860371953
-
Epigenetic protein families: A new frontier for drug discovery
-
Arrowsmith, C.H., Bountra, C., Fish, P.V., Lee, K. & Schapira, M. Epigenetic protein families: a new frontier for drug discovery. Nat. Rev. Drug Discov. 11, 384-400 (2012).
-
(2012)
Nat. Rev. Drug Discov.
, vol.11
, pp. 384-400
-
-
Arrowsmith, C.H.1
Bountra, C.2
Fish, P.V.3
Lee, K.4
Schapira, M.5
-
12
-
-
69949148388
-
Protein methyltransferases as a target class for drug discovery
-
Copeland, R.A., Solomon, M.E. & Richon, V.M. Protein methyltransferases as a target class for drug discovery. Nat. Rev. Drug Discov. 8, 724-732 (2009).
-
(2009)
Nat. Rev. Drug Discov.
, vol.8
, pp. 724-732
-
-
Copeland, R.A.1
Solomon, M.E.2
Richon, V.M.3
-
13
-
-
80054984945
-
Inhibition of BET recruitment to chromatin as an effective treatment for MLL-fusion leukaemia
-
Dawson, M.A. et al. Inhibition of BET recruitment to chromatin as an effective treatment for MLL-fusion leukaemia. Nature 478, 529-533 (2011).
-
(2011)
Nature
, vol.478
, pp. 529-533
-
-
Dawson, M.A.1
-
14
-
-
84867913800
-
Chromatin modifications as therapeutic targets in MLL-rearranged leukemia
-
Deshpande, A.J., Bradner, J. & Armstrong, S.A. Chromatin modifications as therapeutic targets in MLL-rearranged leukemia. Trends Immunol. 33, 563-570 (2012).
-
(2012)
Trends Immunol.
, vol.33
, pp. 563-570
-
-
Deshpande, A.J.1
Bradner, J.2
Armstrong, S.A.3
-
16
-
-
84863770814
-
Cancer genetics and epigenetics: Two sides of the same coin?
-
You, J.S. & Jones, P.A. Cancer genetics and epigenetics: two sides of the same coin? Cancer Cell 22, 9-20 (2012).
-
(2012)
Cancer Cell
, vol.22
, pp. 9-20
-
-
You, J.S.1
Jones, P.A.2
-
17
-
-
79960983894
-
Drug target deconvolution by chemical proteomics
-
Raida, M. Drug target deconvolution by chemical proteomics. Curr. Opin. Chem. Biol. 15, 570-575 (2011).
-
(2011)
Curr. Opin. Chem. Biol.
, vol.15
, pp. 570-575
-
-
Raida, M.1
-
18
-
-
79952396960
-
Chemoproteomics profiling of HDAC inhibitors reveals selective targeting of HDAC complexes
-
Bantscheff, M. et al. Chemoproteomics profiling of HDAC inhibitors reveals selective targeting of HDAC complexes. Nat. Biotechnol. 29, 255-265 (2011).
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 255-265
-
-
Bantscheff, M.1
-
19
-
-
77949350034
-
Identification of a primary target of thalidomide teratogenicity
-
Ito, T. et al. Identification of a primary target of thalidomide teratogenicity. Science 327, 1345-1350 (2010).
-
(2010)
Science
, vol.327
, pp. 1345-1350
-
-
Ito, T.1
-
20
-
-
0029932598
-
A mammalian histone deacetylase related to the yeast transcriptional regulator Rpd3p
-
Taunton, J., Hassig, C.A. & Schreiber, S.L. A mammalian histone deacetylase related to the yeast transcriptional regulator Rpd3p. Science 272, 408-411 (1996).
-
(1996)
Science
, vol.272
, pp. 408-411
-
-
Taunton, J.1
Hassig, C.A.2
Schreiber, S.L.3
-
21
-
-
84857054908
-
Chromatin affinity-precipitation using a small metabolic molecule: Its application to analysis of O-acetyl-ADP-ribose
-
Tung, S.Y., Hong, J.Y., Walz, T., Moazed, D. & Liou, G.G. Chromatin affinity-precipitation using a small metabolic molecule: its application to analysis of O-acetyl-ADP-ribose. Cell. Mol. Life Sci. 69, 641-650 (2012).
-
(2012)
Cell. Mol. Life Sci.
, vol.69
, pp. 641-650
-
-
Tung, S.Y.1
Hong, J.Y.2
Walz, T.3
Moazed, D.4
Liou, G.G.5
-
22
-
-
79958078949
-
Discovery and characterization of small molecule inhibitors of the BET family bromodomains
-
Chung, C.W. et al. Discovery and characterization of small molecule inhibitors of the BET family bromodomains. J. Med. Chem. 54, 3827-3838 (2011).
-
(2011)
J. Med. Chem.
, vol.54
, pp. 3827-3838
-
-
Chung, C.W.1
-
23
-
-
80052955256
-
BET bromodomain inhibition as a therapeutic strategy to target c-Myc
-
Delmore, J.E. et al. BET bromodomain inhibition as a therapeutic strategy to target c-Myc. Cell 146, 904-917 (2011).
-
(2011)
Cell
, vol.146
, pp. 904-917
-
-
Delmore, J.E.1
-
24
-
-
78650847770
-
Selective inhibition of BET bromodomains
-
Filippakopoulos, P. et al. Selective inhibition of BET bromodomains. Nature 468, 1067-1073 (2010).
-
(2010)
Nature
, vol.468
, pp. 1067-1073
-
-
Filippakopoulos, P.1
-
25
-
-
84876222028
-
Selective inhibition of tumor oncogenes by disruption of super-enhancers
-
Loven, J. et al. Selective inhibition of tumor oncogenes by disruption of super-enhancers. Cell 153, 320-334 (2013).
-
(2013)
Cell
, vol.153
, pp. 320-334
-
-
Loven, J.1
-
26
-
-
78650806593
-
Suppression of inflammation by a synthetic histone mimic
-
Nicodeme, E. et al. Suppression of inflammation by a synthetic histone mimic. Nature 468, 1119-1123 (2010).
-
(2010)
Nature
, vol.468
, pp. 1119-1123
-
-
Nicodeme, E.1
-
27
-
-
80055000824
-
RNAi screen identifies Brd4 as a therapeutic target in acute myeloid leukaemia
-
Zuber, J. et al. RNAi screen identifies Brd4 as a therapeutic target in acute myeloid leukaemia. Nature 478, 524-528 (2011).
-
(2011)
Nature
, vol.478
, pp. 524-528
-
-
Zuber, J.1
-
28
-
-
77951579858
-
AT7519, A novel small molecule multi-cyclin-dependent kinase inhibitor, induces apoptosis in multiple myeloma via GSK-3beta activation and RNA polymerase II inhibition
-
Santo, L. et al. AT7519, A novel small molecule multi-cyclin-dependent kinase inhibitor, induces apoptosis in multiple myeloma via GSK-3beta activation and RNA polymerase II inhibition. Oncogene 29, 2325-2336 (2010).
-
(2010)
Oncogene
, vol.29
, pp. 2325-2336
-
-
Santo, L.1
-
29
-
-
84861857476
-
RNA polymerase II elongation control
-
Zhou, Q., Li, T. & Price, D.H. RNA polymerase II elongation control. Annu. Rev. Biochem. 81, 119-143 (2012).
-
(2012)
Annu. Rev. Biochem.
, vol.81
, pp. 119-143
-
-
Zhou, Q.1
Li, T.2
Price, D.H.3
-
30
-
-
77950825064
-
AT7519, a cyclin-dependent kinase inhibitor, exerts its effects by transcriptional inhibition in leukemia cell lines and patient samples
-
Squires, M.S. et al. AT7519, a cyclin-dependent kinase inhibitor, exerts its effects by transcriptional inhibition in leukemia cell lines and patient samples. Mol. Cancer Ther. 9, 920-928 (2010).
-
(2010)
Mol. Cancer Ther.
, vol.9
, pp. 920-928
-
-
Squires, M.S.1
-
31
-
-
84875185055
-
Transcription-dependent dynamic supercoiling is a short-range genomic force
-
Kouzine, F. et al. Transcription-dependent dynamic supercoiling is a short-range genomic force. Nat. Struct. Mol. Biol. 20, 396-403 (2013).
-
(2013)
Nat. Struct. Mol. Biol.
, vol.20
, pp. 396-403
-
-
Kouzine, F.1
-
32
-
-
84875134984
-
Transcription forms and remodels supercoiling domains unfolding large-scale chromatin structures
-
Naughton, C. et al. Transcription forms and remodels supercoiling domains unfolding large-scale chromatin structures. Nat. Struct. Mol. Biol. 20, 387-395 (2013).
-
(2013)
Nat. Struct. Mol. Biol.
, vol.20
, pp. 387-395
-
-
Naughton, C.1
-
33
-
-
48449084118
-
Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells
-
Marson, A. et al. Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells. Cell 134, 521-533 (2008).
-
(2008)
Cell
, vol.134
, pp. 521-533
-
-
Marson, A.1
-
34
-
-
33845925394
-
Chromatin immunoprecipitation and microarray-based analysis of protein location
-
Lee, T.I., Johnstone, S.E. & Young, R.A. Chromatin immunoprecipitation and microarray-based analysis of protein location. Nat. Protoc. 1, 729-748 (2006).
-
(2006)
Nat. Protoc.
, vol.1
, pp. 729-748
-
-
Lee, T.I.1
Johnstone, S.E.2
Young, R.A.3
-
35
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead, B., Trapnell, C., Pop, M. & Salzberg, S.L. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10, R25 (2009).
-
(2009)
Genome Biol.
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
36
-
-
53849146020
-
Model-based analysis of ChIP-Seq (MACS)
-
Zhang, Y. et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 9, R137 (2008).
-
(2008)
Genome Biol.
, vol.9
-
-
Zhang, Y.1
-
37
-
-
34447098370
-
A chromatin landmark and transcription initiation at most promoters in human cells
-
Guenther, M.G., Levine, S.S., Boyer, L.A., Jaenisch, R. & Young, R.A. A chromatin landmark and transcription initiation at most promoters in human cells. Cell 130, 77-88 (2007).
-
(2007)
Cell
, vol.130
, pp. 77-88
-
-
Guenther, M.G.1
Levine, S.S.2
Boyer, L.A.3
Jaenisch, R.4
Young, R.A.5
-
38
-
-
79951516056
-
A unique chromatin signature uncovers early developmental enhancers in humans
-
Rada-Iglesias, A. et al. A unique chromatin signature uncovers early developmental enhancers in humans. Nature 470, 279-283 (2011).
-
(2011)
Nature
, vol.470
, pp. 279-283
-
-
Rada-Iglesias, A.1
-
39
-
-
78650758676
-
Histone H3K27ac separates active from poised enhancers and predicts developmental state
-
Creyghton, M.P. et al. Histone H3K27ac separates active from poised enhancers and predicts developmental state. Proc. Natl. Acad. Sci. USA 107, 21931-21936 (2010).
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 21931-21936
-
-
Creyghton, M.P.1
-
40
-
-
77957139539
-
Mediator and cohesin connect gene expression and chromatin architecture
-
Kagey, M.H. et al. Mediator and cohesin connect gene expression and chromatin architecture. Nature 467, 430-435 (2010).
-
(2010)
Nature
, vol.467
, pp. 430-435
-
-
Kagey, M.H.1
-
41
-
-
77951920690
-
C-Myc regulates transcriptional pause release
-
Rahl, P.B. et al. c-Myc regulates transcriptional pause release. Cell 141, 432-445 (2010).
-
(2010)
Cell
, vol.141
, pp. 432-445
-
-
Rahl, P.B.1
-
42
-
-
75249087100
-
EdgeR: A Bioconductor package for differential expression analysis of digital gene expression data
-
Robinson, M.D., McCarthy, D.J. & Smyth, G.K. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26, 139-140 (2010).
-
(2010)
Bioinformatics
, vol.26
, pp. 139-140
-
-
Robinson, M.D.1
McCarthy, D.J.2
Smyth, G.K.3
-
43
-
-
84856008906
-
Differential oestrogen receptor binding is associated with clinical outcome in breast cancer
-
Ross-Innes, C.S. et al. Differential oestrogen receptor binding is associated with clinical outcome in breast cancer. Nature 481, 389-393 (2012).
-
(2012)
Nature
, vol.481
, pp. 389-393
-
-
Ross-Innes, C.S.1
|