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Volumn 4, Issue DEC, 2013, Pages

High throughput nanostructure-initiator mass spectrometry screening of microbial growth conditions for maximal β-glucosidase production

Author keywords

Enzymatic activity screening; High throughput; Microbial communities; NIMS; glucosidase

Indexed keywords

BETA GLUCOSIDASE; BIOFUEL; CELLOBIOSE; GLUCOSE; MICROCRYSTALLINE CELLULOSE; NANOMATERIAL;

EID: 84892145489     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2013.00365     Document Type: Article
Times cited : (9)

References (31)
  • 1
    • 84862497963 scopus 로고    scopus 로고
    • Genomics of aerobic cellulose utilization systems in Actinobacteria
    • doi: 10.1371/journal.pone.0039331
    • Anderson, I., Abt, B., Lykidis, A., Klenk, H. P., Kyrpides, N., and Ivanova, N. (2012). Genomics of aerobic cellulose utilization systems in Actinobacteria. PLoS ONE 7: e39331. doi: 10.1371/journal.pone.0039331.
    • (2012) PLoS ONE , vol.7
    • Anderson, I.1    Abt, B.2    Lykidis, A.3    Klenk, H.P.4    Kyrpides, N.5    Ivanova, N.6
  • 2
    • 43849104156 scopus 로고    scopus 로고
    • On-chip synthesis and label-free assays of oligosaccharide arrays
    • doi: 10.1002/anie.200704998
    • Ban, L., and Mrksich, M. (2008). On-chip synthesis and label-free assays of oligosaccharide arrays. Angew. Chem. Int. Ed. Engl. 47, 3396-3399. doi: 10.1002/anie.200704998.
    • (2008) Angew. Chem. Int. Ed. Engl. , vol.47 , pp. 3396-3399
    • Ban, L.1    Mrksich, M.2
  • 3
    • 81455135436 scopus 로고    scopus 로고
    • Cellulose hydrolysis by cellobiohydrolase Cel7A shows mixed hyperbolic product inhibition
    • doi: 10.1007/s12010-011-9242-y
    • Bezerra, R. M. F., Dias, A. A., Fraga, I., and Pereira, A. N. (2011). Cellulose hydrolysis by cellobiohydrolase Cel7A shows mixed hyperbolic product inhibition. Appl. Biochem. Biotechnol. 165, 178-189. doi: 10.1007/s12010-011-9242-y.
    • (2011) Appl. Biochem. Biotechnol. , vol.165 , pp. 178-189
    • Bezerra, R.M.F.1    Dias, A.A.2    Fraga, I.3    Pereira, A.N.4
  • 4
    • 38749113965 scopus 로고    scopus 로고
    • Addressing the need for alternative transportation fuels: the joint BioEnergy institute
    • doi: 10.1021/cb700267s
    • Blanch, H. W., Adams, P. D., Andrews-Cramer, K. M., Frommer, W. B., Simmons, B. A., and Keasling, J. D. (2008). Addressing the need for alternative transportation fuels: the joint BioEnergy institute. ACS Chem. Biol. 3, 17-20. doi: 10.1021/cb700267s.
    • (2008) ACS Chem. Biol. , vol.3 , pp. 17-20
    • Blanch, H.W.1    Adams, P.D.2    Andrews-Cramer, K.M.3    Frommer, W.B.4    Simmons, B.A.5    Keasling, J.D.6
  • 5
    • 77957113558 scopus 로고    scopus 로고
    • Glycan array on aluminum oxide-coated glass slides through phosphonate chemistry
    • doi: 10.1021/ja1046523
    • Chang, H., Han, J. L., Tseng, S. Y., Lee, H. Y., Lin, C. W., Lin, Y. C.et al. (2010). Glycan array on aluminum oxide-coated glass slides through phosphonate chemistry. J. Am. Chem. Soc. 132, 13371-13380. doi: 10.1021/ja1046523.
    • (2010) J. Am. Chem. Soc. , vol.132 , pp. 13371-13380
    • Chang, H.1    Han, J.L.2    Tseng, S.Y.3    Lee, H.Y.4    Lin, C.W.5    Lin Y.C.et, al.6
  • 6
    • 77649178895 scopus 로고    scopus 로고
    • A long-wavelength fluorescent substrate for continuous fluorometric determination of alpha-mannosidase activity: resorufin alpha-D-mannopyranoside
    • doi: 10.1016/j.ab.2009.11.039
    • Coleman, D. J., Kuntz, D. A., Venkatesan, M., Cook, G. M., Williamson, S. P., Rose, D. R., et al. (2010). A long-wavelength fluorescent substrate for continuous fluorometric determination of alpha-mannosidase activity: resorufin alpha-D-mannopyranoside. Anal. Biochem. 399, 7-12. doi: 10.1016/j.ab.2009.11.039.
    • (2010) Anal. Biochem. , vol.399 , pp. 7-12
    • Coleman, D.J.1    Kuntz, D.A.2    Venkatesan, M.3    Cook, G.M.4    Williamson, S.P.5    Rose, D.R.6
  • 7
    • 35548972488 scopus 로고    scopus 로고
    • A long-wavelength fluorescent substrate for continuous fluorometric determination of cellulase activity: resorufin-beta-D-cellobioside
    • doi: 10.1016/j.ab.2007.08.027
    • Coleman, D. J., Studler, M. J., and Naleway, J. J. (2007). A long-wavelength fluorescent substrate for continuous fluorometric determination of cellulase activity: resorufin-beta-D-cellobioside. Anal. Biochem. 371, 146-153. doi: 10.1016/j.ab.2007.08.027.
    • (2007) Anal. Biochem. , vol.371 , pp. 146-153
    • Coleman, D.J.1    Studler, M.J.2    Naleway, J.J.3
  • 8
    • 78449277480 scopus 로고    scopus 로고
    • Cellulase activities in biomass conversion: measurement methods and comparison
    • doi: 10.3109/07388551.2010.490938
    • Dashtban, M., Maki, M., Leung, K. T., Mao, C. Q., and Qin, W. S. (2010). Cellulase activities in biomass conversion: measurement methods and comparison. Crit. Rev. Biotechnol. 30, 302-309. doi: 10.3109/07388551.2010.490938.
    • (2010) Crit. Rev. Biotechnol. , vol.30 , pp. 302-309
    • Dashtban, M.1    Maki, M.2    Leung, K.T.3    Mao, C.Q.4    Qin, W.S.5
  • 9
    • 70350502815 scopus 로고    scopus 로고
    • Fungal bioconversion of lignocellulosic residues; opportunities & perspectives
    • doi: 10.7150/ijbs.5.578
    • Dashtban, M., Schraft, H., and Qin, W. S. (2009). Fungal bioconversion of lignocellulosic residues; opportunities & perspectives. Int. J. Biol. Sci. 5, 578-595. doi: 10.7150/ijbs.5.578.
    • (2009) Int. J. Biol. Sci. , vol.5 , pp. 578-595
    • Dashtban, M.1    Schraft, H.2    Qin, W.S.3
  • 10
    • 84863122945 scopus 로고    scopus 로고
    • Encoding substrates with mass tags to resolve stereospecific reactions using Nimzyme
    • doi: 10.1002/rcm.6134
    • Deng, K., George, K. W., Reindl, W., Keasling, J. D., Adams, P. D., Lee, T. S., et al. (2012). Encoding substrates with mass tags to resolve stereospecific reactions using Nimzyme. Rapid Commun. Mass Spectrom. 26, 611-615. doi: 10.1002/rcm.6134.
    • (2012) Rapid Commun. Mass Spectrom. , vol.26 , pp. 611-615
    • Deng, K.1    George, K.W.2    Reindl, W.3    Keasling, J.D.4    Adams, P.D.5    Lee, T.S.6
  • 11
    • 84891669021 scopus 로고    scopus 로고
    • Versatile synthesis of probes for high-throughput enzyme activity screening
    • doi: 10.1007/s00216-013-6888-z
    • de Rond, T., Peralta-Yahya, P., Cheng, X. L., Northen, T. R., and Keasling, J. D. (2013). Versatile synthesis of probes for high-throughput enzyme activity screening. Anal. Bioanal. Chem. 405, 4969-4973. doi: 10.1007/s00216-013-6888-z.
    • (2013) Anal. Bioanal. Chem. , vol.405 , pp. 4969-4973
    • de Rond, T.1    Peralta-Yahya, P.2    Cheng, X.L.3    Northen, T.R.4    Keasling, J.D.5
  • 12
    • 3142757398 scopus 로고    scopus 로고
    • Cellulosomes: plant-cell-wall-degrading enzyme complexes
    • doi: 10.1038/nrmicro925
    • Doi, R. H., and Kosugi, A. (2004). Cellulosomes: plant-cell-wall-degrading enzyme complexes. Nat. Rev. Microbiol. 2, 541-551. doi: 10.1038/nrmicro925.
    • (2004) Nat. Rev. Microbiol. , vol.2 , pp. 541-551
    • Doi, R.H.1    Kosugi, A.2
  • 13
    • 80052631636 scopus 로고    scopus 로고
    • Glycoside hydrolase activities of thermophilic bacterial consortia adapted to switchgrass
    • doi: 10.1128/AEM.00032-11
    • Gladden, J. M., Allgaier, M., Miller, C. S., Hazen, T. C., Vandergheynst, J. S., Hugenholtz, P., et al. (2011). Glycoside hydrolase activities of thermophilic bacterial consortia adapted to switchgrass. Appl. Environ. Microbiol. 77, 5804-5812. doi: 10.1128/AEM.00032-11.
    • (2011) Appl. Environ. Microbiol. , vol.77 , pp. 5804-5812
    • Gladden, J.M.1    Allgaier, M.2    Miller, C.S.3    Hazen, T.C.4    Vandergheynst, J.S.5    Hugenholtz, P.6
  • 14
    • 84863412250 scopus 로고    scopus 로고
    • Acoustic deposition with NIMS as a high-throughput enzyme activity assay
    • doi: 10.1007/s00216-012-5908-8
    • Greving, M., Cheng, X. L., Reindl, W., Bowen, B., Deng, K., Louie, K., et al. (2012). Acoustic deposition with NIMS as a high-throughput enzyme activity assay. Anal. Bioanal. Chem. 403, 707-711. doi: 10.1007/s00216-012-5908-8.
    • (2012) Anal. Bioanal. Chem. , vol.403 , pp. 707-711
    • Greving, M.1    Cheng, X.L.2    Reindl, W.3    Bowen, B.4    Deng, K.5    Louie, K.6
  • 15
    • 0035937505 scopus 로고    scopus 로고
    • Intracellular functions of N-linked glycans
    • 10.1126/science.291.5512.2364
    • Helenius, A., and Aebi, M. (2001). Intracellular functions of N-linked glycans. Science 291, 2364-2369. 10.1126/science.291.5512.2364.
    • (2001) Science , vol.291 , pp. 2364-2369
    • Helenius, A.1    Aebi, M.2
  • 16
    • 73149101268 scopus 로고    scopus 로고
    • Inhibition performance of lignocellulose degradation products on industrial cellulase enzymes during cellulose hydrolysis
    • doi: 10.1007/s12010-009-8525-z
    • Jing, X. Y., Zhang, X. X., and Bao, J. (2009). Inhibition performance of lignocellulose degradation products on industrial cellulase enzymes during cellulose hydrolysis. Appl. Biochem. Biotechnol. 159, 696-707. doi: 10.1007/s12010-009-8525-z.
    • (2009) Appl. Biochem. Biotechnol. , vol.159 , pp. 696-707
    • Jing, X.Y.1    Zhang, X.X.2    Bao, J.3
  • 17
    • 80053373898 scopus 로고    scopus 로고
    • Complete genome sequence of Thermobispora bispora type strain (R51T)
    • doi: 10.4056/sigs.962171
    • Liolios, K., Sikorski, J., Jando, M., Lapidus, A., Copeland, A., Del Rio, T. G., et al. (2010). Complete genome sequence of Thermobispora bispora type strain (R51T). Stand. Genomic Sci. 2, 318-326. doi: 10.4056/sigs.962171.
    • (2010) Stand. Genomic Sci. , vol.2 , pp. 318-326
    • Liolios, K.1    Sikorski, J.2    Jando, M.3    Lapidus, A.4    Copeland, A.5    Del Rio, T.G.6
  • 18
    • 0036714783 scopus 로고    scopus 로고
    • Microbial cellulose utilization: fundamentals and biotechnology
    • doi: 10.1128/MMBR.66.3.506-577.2002
    • Lynd, L. R., Weimer, P. J., Van Zyl, W. H., and Pretorius, I. S. (2002). Microbial cellulose utilization: fundamentals and biotechnology. Microbiol. Mol. Biol. Rev. 66, 506-577. doi: 10.1128/MMBR.66.3.506-577.2002.
    • (2002) Microbiol. Mol. Biol. Rev. , vol.66 , pp. 506-577
    • Lynd, L.R.1    Weimer, P.J.2    Van Zyl, W.H.3    Pretorius, I.S.4
  • 19
    • 41649092954 scopus 로고    scopus 로고
    • A nanostructure-initiator mass spectrometry-based enzyme activity assay
    • doi: 10.1073/pnas.0712332105
    • Northen, T. R., Lee, J. C., Hoang, L., Raymond, J., Hwang, D. R., Yannone, S. M., et al. (2008). A nanostructure-initiator mass spectrometry-based enzyme activity assay. Proc. Natl. Acad. Sci. U.S.A. 105, 3678-3683. doi: 10.1073/pnas.0712332105.
    • (2008) Proc. Natl. Acad. Sci. U.S.A. , vol.105 , pp. 3678-3683
    • Northen, T.R.1    Lee, J.C.2    Hoang, L.3    Raymond, J.4    Hwang, D.R.5    Yannone, S.M.6
  • 20
    • 35548992879 scopus 로고    scopus 로고
    • Clathrate nanostructures for mass spectrometry
    • doi: 10.1038/nature06195
    • Northen, T. R., Yanes, O., Northen, M. T., Marrinucci, D., Uritboonthai, W., Apon, J., et al. (2007). Clathrate nanostructures for mass spectrometry. Nature 449, 1033-1033. doi: 10.1038/nature06195.
    • (2007) Nature , vol.449 , pp. 1033-1033
    • Northen, T.R.1    Yanes, O.2    Northen, M.T.3    Marrinucci, D.4    Uritboonthai, W.5    Apon, J.6
  • 21
    • 77950337763 scopus 로고    scopus 로고
    • Plant cell wall polymers as precursors for biofuels
    • doi: 10.1016/j.pbi.2009.12.009
    • Pauly, M., and Keegstra, K. (2010). Plant cell wall polymers as precursors for biofuels. Curr. Opin. Plant Biol. 13, 305-312. doi: 10.1016/j.pbi.2009.12.009.
    • (2010) Curr. Opin. Plant Biol. , vol.13 , pp. 305-312
    • Pauly, M.1    Keegstra, K.2
  • 22
    • 79960999883 scopus 로고    scopus 로고
    • Colloid-based multiplexed screening for plant biomass-degrading glycoside hydrolase activities in microbial communities
    • 10.1039/c1ee01112j
    • Reindl, W., Deng, K., Gladden, J. M., Cheng, G., Wong, A., Singer, S. W., et al. (2011). Colloid-based multiplexed screening for plant biomass-degrading glycoside hydrolase activities in microbial communities. Energy Environ. Sci. 4, 2884-2893. 10.1039/c1ee01112j.
    • (2011) Energy Environ. Sci. , vol.4 , pp. 2884-2893
    • Reindl, W.1    Deng, K.2    Gladden, J.M.3    Cheng, G.4    Wong, A.5    Singer, S.W.6
  • 23
    • 77951799667 scopus 로고    scopus 로고
    • Rapid screening of fatty acids using nanostructure-initiator mass spectrometry
    • doi: 10.1021/ac100159y
    • Reindl, W., and Northen, T. R. (2010). Rapid screening of fatty acids using nanostructure-initiator mass spectrometry. Anal. Chem. 82, 3751-3755. doi: 10.1021/ac100159y.
    • (2010) Anal. Chem. , vol.82 , pp. 3751-3755
    • Reindl, W.1    Northen, T.R.2
  • 24
    • 0038157323 scopus 로고    scopus 로고
    • Microbial hemicellulases
    • 10.1016/S1369-5274(03)00056-0
    • Shallom, D., and Shoham, Y. (2003). Microbial hemicellulases. Curr. Opin. Microbiol. 6, 219-228. 10.1016/S1369-5274(03)00056-0.
    • (2003) Curr. Opin. Microbiol. , vol.6 , pp. 219-228
    • Shallom, D.1    Shoham, Y.2
  • 25
    • 0024098664 scopus 로고
    • Cellulase assay-methods-a review
    • 10.1016/0165-022X(88)90040-1
    • Sharrock, K. R. (1988). Cellulase assay-methods-a review. J. Biochem. Biophys. Methods 17, 81-105. 10.1016/0165-022X(88)90040-1.
    • (1988) J. Biochem. Biophys. Methods , vol.17 , pp. 81-105
    • Sharrock, K.R.1
  • 26
    • 75749125061 scopus 로고    scopus 로고
    • Microbial production of fatty-acid-derived fuels and chemicals from plant biomass
    • doi: 10.1038/nature08721
    • Steen, E. J., Kang, Y. S., Bokinsky, G., Hu, Z. H., Schirmer, A., Mcclure, A., et al. (2010). Microbial production of fatty-acid-derived fuels and chemicals from plant biomass. Nature 463, 559-562. doi: 10.1038/nature08721.
    • (2010) Nature , vol.463 , pp. 559-562
    • Steen, E.J.1    Kang, Y.S.2    Bokinsky, G.3    Hu, Z.H.4    Schirmer, A.5    Mcclure, A.6
  • 27
    • 0037122032 scopus 로고    scopus 로고
    • Using mass spectrometry to characterize self-assembled monolayers presenting peptides, proteins, and carbohydrates
    • doi: 10.1002/anie.200290026
    • Su, J., and Mrksich, M. (2002). Using mass spectrometry to characterize self-assembled monolayers presenting peptides, proteins, and carbohydrates. Angew. Chem. Int. Ed. Engl. 41, 4715-4718. doi: 10.1002/anie.200290026.
    • (2002) Angew. Chem. Int. Ed. Engl. , vol.41 , pp. 4715-4718
    • Su, J.1    Mrksich, M.2
  • 28
    • 0342320403 scopus 로고
    • Isolation and characterization of a cellulolytic actinomycete Microbispora bispora
    • 10.1007/BF00250327
    • Waldron, C. R., Beckervallone, C. A., and Eveleigh, D. E. (1986). Isolation and characterization of a cellulolytic actinomycete Microbispora bispora. Appl. Microbiol. Biotechnol. 24, 477-486. 10.1007/BF00250327.
    • (1986) Appl. Microbiol. Biotechnol. , vol.24 , pp. 477-486
    • Waldron, C.R.1    Beckervallone, C.A.2    Eveleigh, D.E.3
  • 29
    • 0344219715 scopus 로고
    • Saccharification of cellulosics by Microbispora bispora
    • 10.1007/BF00250328
    • Waldron, C. R., and Eveleigh, D. E. (1986). Saccharification of cellulosics by Microbispora bispora. Appl. Microbiol. Biotechnol. 24, 487-492. 10.1007/BF00250328.
    • (1986) Appl. Microbiol. Biotechnol. , vol.24 , pp. 487-492
    • Waldron, C.R.1    Eveleigh, D.E.2
  • 30
    • 50349103331 scopus 로고    scopus 로고
    • Nanostructure-initiator mass spectrometry: a protocol for preparing and applying NIMS surfaces for high-sensitivity mass analysis
    • doi: 10.1038/nprot.2008.110
    • Woo, H. K., Northen, T. R., Yanes, O., and Siuzdak, G. (2008). Nanostructure-initiator mass spectrometry: a protocol for preparing and applying NIMS surfaces for high-sensitivity mass analysis. Nature Protoc. 3, 1341-1349. doi: 10.1038/nprot.2008.110.
    • (2008) Nature Protoc. , vol.3 , pp. 1341-1349
    • Woo, H.K.1    Northen, T.R.2    Yanes, O.3    Siuzdak, G.4
  • 31
    • 11244345992 scopus 로고    scopus 로고
    • Effects of sugar inhibition on cellulases and beta-glucosidase during enzymatic hydrolysis of softwood substrates
    • doi: 10.1385/ABAB:115:1-3:1115
    • Xiao, Z. Z., Zhang, X., Gregg, D. J., and Saddler, J. N. (2004). Effects of sugar inhibition on cellulases and beta-glucosidase during enzymatic hydrolysis of softwood substrates. Appl. Biochem. Biotechnol. 113, 1115-1126. doi: 10.1385/ABAB:115:1-3:1115.
    • (2004) Appl. Biochem. Biotechnol. , vol.113 , pp. 1115-1126
    • Xiao, Z.Z.1    Zhang, X.2    Gregg, D.J.3    Saddler, J.N.4


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