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Volumn 8, Issue 12, 2013, Pages

Differential network analysis applied to preoperative breast cancer chemotherapy response

Author keywords

[No Author keywords available]

Indexed keywords

CYCLOPHOSPHAMIDE; DOXORUBICIN; FLUOROURACIL; PACLITAXEL; TRANSCRIPTION FACTOR GATA 3;

EID: 84891945257     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0081784     Document Type: Article
Times cited : (13)

References (48)
  • 1
    • 0000801240 scopus 로고    scopus 로고
    • Discovering regulatory and signalling circuits in molecular interaction networks
    • Ideker T, Ozier O, Schwikowski B, Siegel AF (2002) Discovering regulatory and signalling circuits in molecular interaction networks. Bioinformatics 18 Suppl 1:S233-S240. (Pubitemid 41185658)
    • (2002) Bioinformatics , vol.18 , Issue.SUPPL. 1
    • Ideker, T.1    Ozier, O.2    Schwikowski, B.3    Siegel, A.F.4
  • 2
    • 13244253770 scopus 로고    scopus 로고
    • Graph-based iterative group analysis enhances microarray interpretation
    • Breitling R, Amtmann A, Herzyk P (2004) Graph-based iterative group analysis enhances microarray interpretation. BMC Bioinformatics 5:100.
    • (2004) BMC Bioinformatics , vol.5 , pp. 100
    • Breitling, R.1    Amtmann, A.2    Herzyk, P.3
  • 3
    • 20844450402 scopus 로고    scopus 로고
    • Differential network expression during drug and stress response
    • DOI 10.1093/bioinformatics/bti440
    • Cabusora L, Sutton E, Fulmer A, Forst CV (2005) Differential network expression during drug and stress response. Bioinformatics 21:2898-2905. (Pubitemid 40862290)
    • (2005) Bioinformatics , vol.21 , Issue.12 , pp. 2898-2905
    • Cabusora, L.1    Sutton, E.2    Fulmer, A.3    Forst, C.V.4
  • 4
    • 34248593385 scopus 로고    scopus 로고
    • Gene expression network analysis and applications to immunology
    • DOI 10.1093/bioinformatics/btm019
    • Nacu S, Critchley-Thorne R, Lee P, Holmes S (2007) Gene expression network analysis and applications to immunology. Bioinformatics 23:850-858. (Pubitemid 47049919)
    • (2007) Bioinformatics , vol.23 , Issue.7 , pp. 850-858
    • Nacu, S.1    Critchley-Thorne, R.2    Lee, P.3    Holmes, S.4
  • 6
    • 41649119247 scopus 로고    scopus 로고
    • Protein networks in disease
    • DOI 10.1101/gr.071852.107
    • Ideker T, Sharan R (2008) Protein networks in disease. Genome Res 18:644-652. (Pubitemid 351482789)
    • (2008) Genome Research , vol.18 , Issue.4 , pp. 644-652
    • Ideker, T.1    Sharan, R.2
  • 7
    • 79959392210 scopus 로고    scopus 로고
    • Optimally discriminative subnetwork markers predict response to chemotherapy
    • Dao P, Wang K, Collins C, Ester M, Lapuk A, et al. (2011) Optimally discriminative subnetwork markers predict response to chemotherapy. Bioinformatics 27:i205-i213.
    • (2011) Bioinformatics , vol.27
    • Dao, P.1    Wang, K.2    Collins, C.3    Ester, M.4    Lapuk, A.5
  • 8
    • 84856094560 scopus 로고    scopus 로고
    • Differential network biology
    • Ideker T, Krogan NJ (2012) Differential network biology. Mol Syst Biol 8:565.
    • (2012) Mol Syst Biol , vol.8 , pp. 565
    • Ideker, T.1    Krogan, N.J.2
  • 11
    • 33747891871 scopus 로고    scopus 로고
    • Predicting the prognosis of breast cancer by integrating clinical and microarray data with Bayesian networks
    • DOI 10.1093/bioinformatics/btl230
    • Gevaert O, De Smet F, Timmerman D, Moreau Y, De Moor B (2006) Predicting the prognosis of breast cancer by integrating clinical and microarray data with bayesian networks. Bioinformatics 22:e184-e190. (Pubitemid 44288285)
    • (2006) Bioinformatics , vol.22 , Issue.14
    • Gevaert, O.1    De Smet, F.2    Timmerman, D.3    Moreau, Y.4    De Moor, B.5
  • 12
    • 84860478431 scopus 로고    scopus 로고
    • A critical evaluation of network and pathway-based classifiers for outcome prediction in breast cancer
    • Staiger C, Cadot S, Kooter R, Dittrich M, Mller T, et al. (2012) A critical evaluation of network and pathway-based classifiers for outcome prediction in breast cancer. PLoS One 7:e34796.
    • (2012) PLoS One , vol.7
    • Staiger, C.1    Cadot, S.2    Kooter, R.3    Dittrich, M.4    Mller, T.5
  • 13
    • 78651324347 scopus 로고    scopus 로고
    • The string database in 2011: Functional interaction networks of proteins, globally integrated and scored
    • Szklarczyk D, Franceschini A, Kuhn M, Simonovic M, Roth A, et al. (2011) The string database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res 39:D561-D568.
    • (2011) Nucleic Acids Res , vol.39
    • Szklarczyk, D.1    Franceschini, A.2    Kuhn, M.3    Simonovic, M.4    Roth, A.5
  • 14
    • 77954168391 scopus 로고    scopus 로고
    • Effect of training-sample size and classification difficulty on the accuracy of genomic predictors
    • Popovici V, Chen W, Gallas BG, Hatzis C, Shi W, et al. (2010) Effect of training-sample size and classification difficulty on the accuracy of genomic predictors. Breast Cancer Res 12:R5.
    • (2010) Breast Cancer Res , vol.12
    • Popovici, V.1    Chen, W.2    Gallas, B.G.3    Hatzis, C.4    Shi, W.5
  • 15
    • 78649489546 scopus 로고    scopus 로고
    • Expressence-revealing the essence of differential experimental data in the context of an interaction/regulation net-work
    • Warsow G, Greber B, Falk S S I, Harder C, Siatkowski M, et al. (2010) Expressence-revealing the essence of differential experimental data in the context of an interaction/regulation net-work. BMC Syst Biol 4:164.
    • (2010) BMC Syst Biol , vol.4 , pp. 164
    • Warsow, G.1    Greber, B.2    Falk, S.S.I.3    Harder, C.4    Siatkowski, M.5
  • 18
    • 0017184389 scopus 로고
    • A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
    • Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72:248-254.
    • (1976) Anal Biochem , vol.72 , pp. 248-254
    • Bradford, M.M.1
  • 19
    • 84868087219 scopus 로고    scopus 로고
    • Metabolic profiling reveals sphingosine-1-phosphate kinase 2 and lyase as key targets of (phyto-) estrogen action in the breast cancer cell line mcf-7 and not in mcf-12a
    • Engel N, Lisec J, Piechulla B, Nebe B (2012) Metabolic profiling reveals sphingosine-1-phosphate kinase 2 and lyase as key targets of (phyto-) estrogen action in the breast cancer cell line mcf-7 and not in mcf-12a. PLoS One 7:e47833.
    • (2012) PLoS One , vol.7
    • Engel, N.1    Lisec, J.2    Piechulla, B.3    Nebe, B.4
  • 20
    • 41649102048 scopus 로고    scopus 로고
    • Response to neoadjuvant therapy and long-term survival in patients with triple-negative breast cancer
    • Liedtke C, Mazouni C, Hess KR, Andr F, Tordai A, et al. (2008) Response to neoadjuvant therapy and long-term survival in patients with triple-negative breast cancer. J Clin Oncol 26:1275-1281.
    • (2008) J Clin Oncol , vol.26 , pp. 1275-1281
    • Liedtke, C.1    Mazouni, C.2    Hess, K.R.3    Andr, F.4    Tordai, A.5
  • 21
    • 34447130861 scopus 로고    scopus 로고
    • Positive cross-regulatory loop ties GATA-3 to estrogen receptor α expression in breast cancer
    • DOI 10.1158/0008-5472.CAN-07-0746
    • Eeckhoute J, Keeton EK, Lupien M, Krum SA, Carroll JS, et al. (2007) Positive cross-regulatory loop ties gata-3 to estrogen receptor alpha expression in breast cancer. Cancer Res 67:6477-6483. (Pubitemid 47037533)
    • (2007) Cancer Research , vol.67 , Issue.13 , pp. 6477-6483
    • Eeckhoute, J.1    Keeton, E.K.2    Lupien, M.3    Krum, S.A.4    Carroll, J.S.5    Brown, M.6
  • 22
    • 73949087506 scopus 로고    scopus 로고
    • Gata3 in development and cancer differentiation: Cells gata have it!
    • Chou J, Provot S, Werb Z (2010) Gata3 in development and cancer differentiation: cells gata have it! J Cell Physiol 222:42-49.
    • (2010) J Cell Physiol , vol.222 , pp. 42-49
    • Chou, J.1    Provot, S.2    Werb, Z.3
  • 24
    • 0028070358 scopus 로고
    • 1 phase by interference with spindle formation without affecting other microtubule functions during anaphase and telephase
    • Long BH, Fairchild CR (1994) Paclitaxel inhibits progression of mitotic cells to g1 phase by interference with spindle formation without affecting other microtubule functions during anaphase and telephase. Cancer Res 54:4355-4361. (Pubitemid 24273147)
    • (1994) Cancer Research , vol.54 , Issue.16 , pp. 4355-4361
    • Long, B.H.1    Fairchild, C.R.2
  • 26
    • 74949109997 scopus 로고    scopus 로고
    • Dysregulated expression of fau and melk is associated with poor prognosis in breast cancer
    • Pickard MR, Green AR, Ellis IO, Caldas C, Hedge VL, et al. (2009) Dysregulated expression of fau and melk is associated with poor prognosis in breast cancer. Breast Cancer Res 11:R60.
    • (2009) Breast Cancer Res , vol.11
    • Pickard, M.R.1    Green, A.R.2    Ellis, I.O.3    Caldas, C.4    Hedge, V.L.5
  • 28
    • 78449267044 scopus 로고    scopus 로고
    • Maternal embryonic leucine zipper kinase is upregulated and required in mammary tumor-initiating cells in vivo
    • Hebbard LW, Maurer J, Miller A, Lesperance J, Hassell J, et al. (2010) Maternal embryonic leucine zipper kinase is upregulated and required in mammary tumor-initiating cells in vivo. Cancer Res 70:8863-8873.
    • (2010) Cancer Res , vol.70 , pp. 8863-8873
    • Hebbard, L.W.1    Maurer, J.2    Miller, A.3    Lesperance, J.4    Hassell, J.5
  • 29
    • 0242582453 scopus 로고    scopus 로고
    • KIP2 by Interacting with Its Cyclin-binding Domain
    • DOI 10.1074/jbc.M308953200
    • Joaquin M, Watson RJ (2003) The cell cycle-regulated b-myb transcription factor overcomes cyclindependent kinase inhibitory activity of p57 (kip2) by interacting with its cyclin-binding domain. J Biol Chem 278:44255-44264. (Pubitemid 37377170)
    • (2003) Journal of Biological Chemistry , vol.278 , Issue.45 , pp. 44255-44264
    • Joaquin, M.1    Watson, R.J.2
  • 31
    • 0029924478 scopus 로고    scopus 로고
    • B-myb promotes S phase and is a downstream target of the negative regulator p107 in human cells
    • DOI 10.1074/jbc.271.16.9363
    • Sala A, Casella I, Bellon T, Calabretta B, Watson RJ, et al. (1996) B-myb promotes s phase and is a downstream target of the negative regulator p107 in human cells. J Biol Chem 271:9363-9367. (Pubitemid 26139921)
    • (1996) Journal of Biological Chemistry , vol.271 , Issue.16 , pp. 9363-9367
    • Sala, A.1    Casella, I.2    Bellon, T.3    Calabretta, B.4    Watson, R.J.5    Peschle, C.6
  • 32
    • 79959340349 scopus 로고    scopus 로고
    • Biograph: Unsupervised biomedical knowledge discovery via automated hypothesis generation
    • Liekens A M L, De Knijf J, Daelemans W, Goethals B, De Rijk P, et al. (2011) Biograph: unsupervised biomedical knowledge discovery via automated hypothesis generation. Genome Biol 12:R57.
    • (2011) Genome Biol , vol.12
    • Liekens, A.M.L.1    De Knijf, J.2    Daelemans, W.3    Goethals, B.4    De Rijk, P.5
  • 37
    • 0032550224 scopus 로고    scopus 로고
    • P21 is a critical CDK2 regulator essential for proliferation control in Rb-deficient cells
    • DOI 10.1083/jcb.141.2.503
    • Brugarolas J, Bronson RT, Jacks T (1998) p21 is a critical cdk2 regulator essential for proliferation control in rb-deficient cells. J Cell Biol 141:503-514. (Pubitemid 28237097)
    • (1998) Journal of Cell Biology , vol.141 , Issue.2 , pp. 503-514
    • Brugarolas, J.1    Bronson, R.T.2    Jacks, T.3
  • 38
    • 85081811191 scopus 로고    scopus 로고
    • Photoproduction of Vitamin D3 and Activation into 1a, 25-dihydroxyvitamin D3 in Human Epidermal Keratinocytes, Dermal Fibroblasts and Other Cells
    • Leuven University Press
    • Vantieghem K (2006) Photoproduction of Vitamin D3 and Activation into 1a, 25-dihydroxyvitamin D3 in Human Epidermal Keratinocytes, Dermal Fibroblasts and Other Cells. Number 371 in Acta Biomedica Lovaniensia. Leuven University Press, 117 pp.
    • (2006) Number 371 in Acta Biomedica Lovaniensia , pp. 117
    • Vantieghem, K.1
  • 40
    • 0036471923 scopus 로고    scopus 로고
    • Phosphorylation of a novel zinc-finger-like protein, ZPR9, by murine protein serine/threonine kinase 38 (MPK38)
    • DOI 10.1042/0264-6021:3610597
    • Seong HA, Gil M, Kim KT, Kim SJ, Ha H (2002) Phosphorylation of a novel zinc-finger-like protein, zpr9, by murine protein serine/threonine kinase 38 (mpk38). Biochem J 361:597-604. (Pubitemid 34177828)
    • (2002) Biochemical Journal , vol.361 , Issue.3 , pp. 597-604
    • Seong, H.-A.1    Gil, M.2    Kim, K.-T.3    Kim, S.-J.4    Ha, H.5
  • 41
    • 0037984272 scopus 로고    scopus 로고
    • Enhancement of B-MYB transcriptional activity by ZPR9, a novel zinc finger protein
    • DOI 10.1074/jbc.M207478200
    • Seong HA, Kim KT, Ha H (2003) Enhancement of b-myb transcriptional activity by zpr9, a novel zinc finger protein. J Biol Chem 278:9655-9662. (Pubitemid 36800462)
    • (2003) Journal of Biological Chemistry , vol.278 , Issue.11 , pp. 9655-9662
    • Seong, H.-A.1    Kim, K.-T.2    Ha, H.3
  • 42
    • 79953737159 scopus 로고    scopus 로고
    • Activation of vmyb avian myeloblastosis viral oncogene homolog-like2 (mybl2)-lin9 complex contributes to human hepatocarcinogenesis and identifies a subset of hepatocellular carcinoma with mutant p53
    • Calvisi DF, Simile MM, Ladu S, Frau M, Evert M, et al. (2011) Activation of vmyb avian myeloblastosis viral oncogene homolog-like2 (mybl2)-lin9 complex contributes to human hepatocarcinogenesis and identifies a subset of hepatocellular carcinoma with mutant p53. Hepatology 53:1226-1236.
    • (2011) Hepatology , vol.53 , pp. 1226-1236
    • Calvisi, D.F.1    Simile, M.M.2    Ladu, S.3    Frau, M.4    Evert, M.5
  • 43
    • 65949108394 scopus 로고    scopus 로고
    • B-myb is required for recovery from the dna damageinduced g2 checkpoint in p53 mutant cells
    • Mannefeld M, Klassen E, Gaubatz S (2009) B-myb is required for recovery from the dna damageinduced g2 checkpoint in p53 mutant cells. Cancer Res 69:4073-4080.
    • (2009) Cancer Res , vol.69 , pp. 4073-4080
    • Mannefeld, M.1    Klassen, E.2    Gaubatz, S.3
  • 44
    • 84856413433 scopus 로고    scopus 로고
    • Parallel evolution under chemotherapy pressure in 29 breast cancer cell lines results in dissimilar mechanisms of resistance
    • Tegze B, Szllsi Z, Haltrich I, Pnzvlt Z, Tth Z, et al. (2012) Parallel evolution under chemotherapy pressure in 29 breast cancer cell lines results in dissimilar mechanisms of resistance. PLoS One 7:e30804.
    • (2012) PLoS One , vol.7
    • Tegze, B.1    Szllsi, Z.2    Haltrich, I.3    Pnzvlt, Z.4    Tth, Z.5
  • 47
    • 77952826682 scopus 로고    scopus 로고
    • Age/race differences in her2 testing and in incidence rates for breast cancer triple subtypes: A population-based study and first report
    • Lund MJ, Butler EN, Hair BY, Ward KC, Andrews JH, et al. (2010) Age/race differences in her2 testing and in incidence rates for breast cancer triple subtypes: a population-based study and first report. Cancer 116:2549-2559.
    • (2010) Cancer , vol.116 , pp. 2549-2559
    • Lund, M.J.1    Butler, E.N.2    Hair, B.Y.3    Ward, K.C.4    Andrews, J.H.5
  • 48
    • 79551694006 scopus 로고    scopus 로고
    • Associations of breast cancer risk factors with tumor subtypes: A pooled analysis from the breast cancer association consortium studies
    • Yang XR, Chang-Claude J, Goode EL, Couch FJ, Nevanlinna H, et al. (2011) Associations of breast cancer risk factors with tumor subtypes: a pooled analysis from the breast cancer association consortium studies. J Natl Cancer Inst 103:250-263.
    • (2011) J Natl Cancer Inst , vol.103 , pp. 250-263
    • Yang, X.R.1    Chang-Claude, J.2    Goode, E.L.3    Couch, F.J.4    Nevanlinna, H.5


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