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Volumn 4, Issue 7, 2012, Pages 756-764

Efficient key pathway mining: Combining networks and OMICS data

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER PROGRAM; CONCEPTUAL FRAMEWORK; DATA ANALYSIS; DNA MICROARRAY; GENE EXPRESSION; HUMAN; HUNTINGTON CHOREA; OMICS DATA; PRIORITY JOURNAL; RNA SEQUENCE;

EID: 84863696578     PISSN: 17579694     EISSN: 17579708     Source Type: Journal    
DOI: 10.1039/c2ib00133k     Document Type: Article
Times cited : (39)

References (27)
  • 1
    • 84863643651 scopus 로고    scopus 로고
    • KeyPathwayMiner - Detecting case-specific biological pathways by using expression data
    • N. Alcaraz H. Kucuk J. Weile A. Wipat J. Baumbach KeyPathwayMiner - detecting case-specific biological pathways by using expression data Internet Math. 2011 7 4 299 313
    • (2011) Internet Math. , vol.7 , Issue.4 , pp. 299-313
    • Alcaraz, N.1    Kucuk, H.2    Weile, J.3    Wipat, A.4    Baumbach, J.5
  • 4
    • 33745242506 scopus 로고    scopus 로고
    • Uncovering a hidden distributed architecture behind scale-free transcriptional regulatory networks
    • S. Balaji L. M. Iyer L. Aravind M. Madan Babu Uncovering a hidden distributed architecture behind scale-free transcriptional regulatory networks J. Mol. Biol. 2006 360 1 204 212
    • (2006) J. Mol. Biol. , vol.360 , Issue.1 , pp. 204-212
    • Balaji, S.1    Iyer, L.M.2    Aravind, L.3    Madan Babu, M.4
  • 5
    • 78650497790 scopus 로고    scopus 로고
    • On the power and limits of evolutionary conservation - Unraveling bacterial gene regulatory networks
    • J. Baumbach On the power and limits of evolutionary conservation - unraveling bacterial gene regulatory networks Nucleic Acids Res. 2010 38 22 7877 7884
    • (2010) Nucleic Acids Res. , vol.38 , Issue.22 , pp. 7877-7884
    • Baumbach, J.1
  • 6
    • 43249091569 scopus 로고    scopus 로고
    • Linking cytoscape and the corynebacterial reference database coryneregnet
    • J. Baumbach L. Apeltsin Linking cytoscape and the corynebacterial reference database coryneregnet BMC Genomics 2008 9 184
    • (2008) BMC Genomics , vol.9 , pp. 184
    • Baumbach, J.1    Apeltsin, L.2
  • 7
    • 60749118619 scopus 로고    scopus 로고
    • Towards the integrated analysis, visualization and reconstruction of microbial gene regulatory networks
    • J. Baumbach A. Tauch S. Rahmann Towards the integrated analysis, visualization and reconstruction of microbial gene regulatory networks Briefings Bioinf. 2009 10 1 75 83
    • (2009) Briefings Bioinf. , vol.10 , Issue.1 , pp. 75-83
    • Baumbach, J.1    Tauch, A.2    Rahmann, S.3
  • 8
    • 13244253770 scopus 로고    scopus 로고
    • Graph-based iterative group analysis enhances microarray interpretation
    • R. Breitling A. Amtmann P. Herzyk Graph-based iterative group analysis enhances microarray interpretation BMC Bioinf. 2004 5 1 100
    • (2004) BMC Bioinf. , vol.5 , Issue.1 , pp. 100
    • Breitling, R.1    Amtmann, A.2    Herzyk, P.3
  • 10
    • 0036081355 scopus 로고    scopus 로고
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
    • R. Edgar M. Domrachev A. E. Lash Gene Expression Omnibus: NCBI gene expression and hybridization array data repository Nucleic Acids Res. 2002 30 1 207 210
    • (2002) Nucleic Acids Res. , vol.30 , Issue.1 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3
  • 12
    • 78149486261 scopus 로고    scopus 로고
    • HiNO: An approach for inferring hierarchical organization from regulatory networks
    • M. L. Hartsperger R. Strache V. Stümpflen HiNO: an approach for inferring hierarchical organization from regulatory networks PLoS One 2010 5 11 e13698
    • (2010) PLoS One , vol.5 , Issue.11 , pp. 13698
    • Hartsperger, M.L.1    Strache, R.2    Stümpflen, V.3
  • 15
    • 0000801240 scopus 로고    scopus 로고
    • Discovering regulatory and signalling circuits in molecular interaction networks
    • T. Ideker O. Ozier B. Schwikowski A. F. Siegel Discovering regulatory and signalling circuits in molecular interaction networks Bioinformatics 2002 18 Suppl 1 S233 S240
    • (2002) Bioinformatics , vol.18 , Issue.SUPPL. 1
    • Ideker, T.1    Ozier, O.2    Schwikowski, B.3    Siegel, A.F.4
  • 16
    • 69049104258 scopus 로고    scopus 로고
    • From Corynebacterium glutamicum to Mycobacterium tuberculosis - Towards transfers of gene regulatory networks and integrated data analyses with MycoRegNet
    • J. Krawczyk T. A. Kohl A. Goesmann J. Kalinowski J. Baumbach From Corynebacterium glutamicum to Mycobacterium tuberculosis - towards transfers of gene regulatory networks and integrated data analyses with MycoRegNet Nucleic Acids Res. 2009 37 14 e97
    • (2009) Nucleic Acids Res. , vol.37 , Issue.14 , pp. 97
    • Krawczyk, J.1    Kohl, T.A.2    Goesmann, A.3    Kalinowski, J.4    Baumbach, J.5
  • 18
    • 60149110378 scopus 로고    scopus 로고
    • Analysis of different MMAS ACO algorithms on unimodal functions and plateaus
    • F. Neumann D. Sudholt C. Witt Analysis of different MMAS ACO algorithms on unimodal functions and plateaus Swarm Intell. 2009 3 1 35 68
    • (2009) Swarm Intell. , vol.3 , Issue.1 , pp. 35-68
    • Neumann, F.1    Sudholt, D.2    Witt, C.3
  • 19
    • 84862195656 scopus 로고    scopus 로고
    • CoryneRegNet 6.0 - Updated database content, new analysis methods and novel features focusing on community demands
    • J. Pauling R. Röttger A. Tauch V. Azevedo J. Baumbach CoryneRegNet 6.0 - updated database content, new analysis methods and novel features focusing on community demands Nucleic Acids Res. 2012 40 D1 D610 D614
    • (2012) Nucleic Acids Res. , vol.40 , Issue.D1
    • Pauling, J.1    Röttger, R.2    Tauch, A.3    Azevedo, V.4    Baumbach, J.5
  • 20
    • 75549085083 scopus 로고    scopus 로고
    • Human protein reference database and human proteinpedia as discovery tools for systems biology
    • T. S. Keshava Prasad K. Kandasamy A. Pandey Human protein reference database and human proteinpedia as discovery tools for systems biology Methods Mol. Biol. 2009 577 67-79
    • (2009) Methods Mol. Biol. , vol.577 , pp. 67-79
    • Keshava Prasad, T.S.1    Kandasamy, K.2    Pandey, A.3
  • 24
    • 47249120912 scopus 로고    scopus 로고
    • Detecting disease-specific dysregulated pathways via analysis of clinical expression profiles
    • I. Ulitsky R. Karp R. Shamir Detecting disease-specific dysregulated pathways via analysis of clinical expression profiles Proc. RECOMB, Res. Comput. Mol. Biol. 2008 4955 347 359
    • (2008) Proc. RECOMB, Res. Comput. Mol. Biol. , vol.4955 , pp. 347-359
    • Ulitsky, I.1    Karp, R.2    Shamir, R.3
  • 26
    • 84863682471 scopus 로고    scopus 로고
    • Extension and robustness of transitivity clustering for protein-protein interaction network analysis
    • T. Wittkop S. Rahmann R. Röttger S. Böcker J. Baumbach Extension and robustness of transitivity clustering for protein-protein interaction network analysis Internet Math. 2011 7 255 273
    • (2011) Internet Math. , vol.7 , pp. 255-273
    • Wittkop, T.1    Rahmann, S.2    Röttger, R.3    Böcker, S.4    Baumbach, J.5
  • 27
    • 70349853066 scopus 로고    scopus 로고
    • Runtime analysis of an ant colony optimization algorithm for TSP instances
    • Y. Zhou Runtime analysis of an ant colony optimization algorithm for TSP instances IEEE Trans. Evol. Comput. 2009 13 5 1083 1092
    • (2009) IEEE Trans. Evol. Comput. , vol.13 , Issue.5 , pp. 1083-1092
    • Zhou, Y.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.