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Volumn 350, Issue 1, 2014, Pages 57-64

Phenotype of htgA (mbiA), a recently evolved orphan gene of Escherichia coli and Shigella, completely overlapping in antisense to yaaW

Author keywords

Functional characterization; htgA yaaW; Overlapping genes

Indexed keywords

GREEN FLUORESCENT PROTEIN;

EID: 84891830178     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/1574-6968.12288     Document Type: Letter
Times cited : (25)

References (28)
  • 1
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: a practical and powerful approach to multiple testing
    • Benjamini Y & Hochberg Y (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Series B Stat Methodol 57: 289-300.
    • (1995) J R Stat Soc Series B Stat Methodol , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 2
    • 84867648797 scopus 로고    scopus 로고
    • The search for new chlorophyll-binding proteins in the cyanobacterium Synechocystis sp. PCC 6803
    • Cheregi O, Vermaas W & Funk C (2012) The search for new chlorophyll-binding proteins in the cyanobacterium Synechocystis sp. PCC 6803. J Biotechnol 162: 124-133.
    • (2012) J Biotechnol , vol.162 , pp. 124-133
    • Cheregi, O.1    Vermaas, W.2    Funk, C.3
  • 3
    • 0025769596 scopus 로고
    • Identification of a gene, closely linked to dnaK, which is required for high-temperature growth of Escherichia coli
    • Dean DO & James R (1991) Identification of a gene, closely linked to dnaK, which is required for high-temperature growth of Escherichia coli. J Gen Microbiol 137: 1271-1277.
    • (1991) J Gen Microbiol , vol.137 , pp. 1271-1277
    • Dean, D.O.1    James, R.2
  • 4
    • 40949139328 scopus 로고    scopus 로고
    • The origin of a novel gene through overprinting in Escherichia coli
    • Delaye L, Deluna A, Lazcano A & Becerra A (2008) The origin of a novel gene through overprinting in Escherichia coli. BMC Evol Biol 8: 31.
    • (2008) BMC Evol Biol , vol.8 , pp. 31
    • Delaye, L.1    Deluna, A.2    Lazcano, A.3    Becerra, A.4
  • 5
    • 33846104333 scopus 로고    scopus 로고
    • Temporal gene-expression in Escherichia coli K-12 biofilms
    • Domka J, Lee J, Bansal T & Wood TK (2007) Temporal gene-expression in Escherichia coli K-12 biofilms. Environ Microbiol 9: 332-346.
    • (2007) Environ Microbiol , vol.9 , pp. 332-346
    • Domka, J.1    Lee, J.2    Bansal, T.3    Wood, T.K.4
  • 6
    • 0027347129 scopus 로고
    • Five open reading frames upstream of the dnaK gene of E. coli
    • James R, Dean DO & Debbage J (1993) Five open reading frames upstream of the dnaK gene of E. coli. DNA Seq 3: 327-332.
    • (1993) DNA Seq , vol.3 , pp. 327-332
    • James, R.1    Dean, D.O.2    Debbage, J.3
  • 7
    • 84866623270 scopus 로고    scopus 로고
    • An effort to make sense of antisense transcription in bacteria
    • Lasa I, Toledo-Arana A & Gingeras TR (2012) An effort to make sense of antisense transcription in bacteria. RNA Biol 9: 1039-1044.
    • (2012) RNA Biol , vol.9 , pp. 1039-1044
    • Lasa, I.1    Toledo-Arana, A.2    Gingeras, T.R.3
  • 8
    • 0000632797 scopus 로고
    • TnphoA: a transposon probe for protein export signals
    • Manoil C & Beckwith J (1985) TnphoA: a transposon probe for protein export signals. P Natl Acad Sci USA 82: 8129-8133.
    • (1985) P Natl Acad Sci USA , vol.82 , pp. 8129-8133
    • Manoil, C.1    Beckwith, J.2
  • 9
    • 0023892552 scopus 로고
    • A novel suicide vector and its use in construction of insertion mutations: osmoregulation of outer membrane proteins and virulence determinants in Vibrio cholerae requires toxR
    • Miller VL & Mekalanos JJ (1988) A novel suicide vector and its use in construction of insertion mutations: osmoregulation of outer membrane proteins and virulence determinants in Vibrio cholerae requires toxR. J Bacteriol 170: 2575-2583.
    • (1988) J Bacteriol , vol.170 , pp. 2575-2583
    • Miller, V.L.1    Mekalanos, J.J.2
  • 10
    • 0033735452 scopus 로고    scopus 로고
    • Improved gfp and inaZ broad-host-range promoter-probe vectors
    • Miller WG, Leveau JH & Lindow SE (2000) Improved gfp and inaZ broad-host-range promoter-probe vectors. Mol Plant Microbe Interact 13: 1243-1250.
    • (2000) Mol Plant Microbe Interact , vol.13 , pp. 1243-1250
    • Miller, W.G.1    Leveau, J.H.2    Lindow, S.E.3
  • 11
    • 84866647354 scopus 로고    scopus 로고
    • Predicting statistical properties of open reading frames in bacterial genomes
    • Mir K, Neuhaus K, Scherer S, Bossert M & Schober S (2012) Predicting statistical properties of open reading frames in bacterial genomes. PLoS ONE 7: e45103.
    • (2012) PLoS ONE , vol.7
    • Mir, K.1    Neuhaus, K.2    Scherer, S.3    Bossert, M.4    Schober, S.5
  • 12
    • 0027229503 scopus 로고
    • The Escherichia coli heat shock gene htpY: mutational analysis, cloning, sequencing, and transcriptional regulation
    • Missiakas D, Georgopoulos C & Raina S (1993) The Escherichia coli heat shock gene htpY: mutational analysis, cloning, sequencing, and transcriptional regulation. J Bacteriol 175: 2613-2624.
    • (1993) J Bacteriol , vol.175 , pp. 2613-2624
    • Missiakas, D.1    Georgopoulos, C.2    Raina, S.3
  • 14
    • 55849108484 scopus 로고    scopus 로고
    • Structural features and the persistence of acquired proteins
    • Narra HP, Cordes MH & Ochman H (2008) Structural features and the persistence of acquired proteins. Proteomics 8: 4772-4781.
    • (2008) Proteomics , vol.8 , pp. 4772-4781
    • Narra, H.P.1    Cordes, M.H.2    Ochman, H.3
  • 15
    • 33745618956 scopus 로고    scopus 로고
    • Regulon and promoter analysis of the E. coli heat-shock factor, σ32, reveals a multifaceted cellular response to heat stress
    • Nonaka G, Blankschien M, Herman C, Gross CA & Rhodius VA (2006) Regulon and promoter analysis of the E. coli heat-shock factor, σ32, reveals a multifaceted cellular response to heat stress. Genes Dev 20: 1776-1789.
    • (2006) Genes Dev , vol.20 , pp. 1776-1789
    • Nonaka, G.1    Blankschien, M.2    Herman, C.3    Gross, C.A.4    Rhodius, V.A.5
  • 16
    • 0035160371 scopus 로고    scopus 로고
    • A functional genomics strategy that uses metabolome data to reveal the phenotype of silent mutations
    • Raamsdonk LM, Teusink B, Broadhurst D et al. (2001) A functional genomics strategy that uses metabolome data to reveal the phenotype of silent mutations. Nat Biotechnol 19: 45-50.
    • (2001) Nat Biotechnol , vol.19 , pp. 45-50
    • Raamsdonk, L.M.1    Teusink, B.2    Broadhurst, D.3
  • 19
    • 77957603759 scopus 로고    scopus 로고
    • Detection of functional overlapping genes: simulation and case studies
    • Sabath N & Graur D (2010) Detection of functional overlapping genes: simulation and case studies. J Mol Evol 71: 308-316.
    • (2010) J Mol Evol , vol.71 , pp. 308-316
    • Sabath, N.1    Graur, D.2
  • 20
    • 58049221198 scopus 로고    scopus 로고
    • A method for the simultaneous estimation of selection intensities in overlapping genes
    • Sabath N, Landan G & Graur D (2008) A method for the simultaneous estimation of selection intensities in overlapping genes. PLoS ONE 3: e3996.
    • (2008) PLoS ONE , vol.3
    • Sabath, N.1    Landan, G.2    Graur, D.3
  • 22
    • 0031013995 scopus 로고    scopus 로고
    • An improved version of suicide vector pKNG101 for gene replacement in Gram-negative bacteria
    • Sarker MR & Cornelis GR (1997) An improved version of suicide vector pKNG101 for gene replacement in Gram-negative bacteria. Mol Microbiol 23: 410-411.
    • (1997) Mol Microbiol , vol.23 , pp. 410-411
    • Sarker, M.R.1    Cornelis, G.R.2
  • 23
    • 46249095809 scopus 로고    scopus 로고
    • Overlapping protein-encoding genes in Pseudomonas fluorescens Pf0-1
    • Silby MW & Levy SB (2008) Overlapping protein-encoding genes in Pseudomonas fluorescens Pf0-1. PLoS Genet 4: e1000094.
    • (2008) PLoS Genet , vol.4
    • Silby, M.W.1    Levy, S.B.2
  • 24
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M & Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739.
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 25
    • 80052969570 scopus 로고    scopus 로고
    • The evolutionary origin of orphan genes
    • Tautz D & Domazet-Loso T (2011) The evolutionary origin of orphan genes. Nat Rev Genet 12: 692-702.
    • (2011) Nat Rev Genet , vol.12 , pp. 692-702
    • Tautz, D.1    Domazet-Loso, T.2
  • 26
    • 68849100934 scopus 로고    scopus 로고
    • Two overlapping antiparallel genes encoding the iron regulator DmdR1 and the Adm proteins control siderophore and antibiotic biosynthesis in Streptomyces coelicolor A3(2)
    • Tunca S, Barreiro C, Coque JJ & Martin JF (2009) Two overlapping antiparallel genes encoding the iron regulator DmdR1 and the Adm proteins control siderophore and antibiotic biosynthesis in Streptomyces coelicolor A3(2). FEBS J 276: 4814-4827.
    • (2009) FEBS J , vol.276 , pp. 4814-4827
    • Tunca, S.1    Barreiro, C.2    Coque, J.J.3    Martin, J.F.4
  • 27
    • 35448980435 scopus 로고    scopus 로고
    • Intragenic promotor-like sites in the genome of Escherichia coli discovery and functional implication
    • Tutukina MN, Shavkunov KS, Masulis IS & Ozoline ON (2007) Intragenic promotor-like sites in the genome of Escherichia coli discovery and functional implication. J Bioinform Comput Biol 5: 549-560.
    • (2007) J Bioinform Comput Biol , vol.5 , pp. 549-560
    • Tutukina, M.N.1    Shavkunov, K.S.2    Masulis, I.S.3    Ozoline, O.N.4
  • 28
    • 84863676402 scopus 로고    scopus 로고
    • MassTRIX reloaded: combined analysis and visualization of transcriptome and metabolome data
    • Wägele B, Witting M, Schmitt-Kopplin P & Suhre K (2012) MassTRIX reloaded: combined analysis and visualization of transcriptome and metabolome data. PLoS ONE 7: e39860.
    • (2012) PLoS ONE , vol.7
    • Wägele, B.1    Witting, M.2    Schmitt-Kopplin, P.3    Suhre, K.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.