-
1
-
-
3042699988
-
Bioinformatic tools and guideline for PCR primer design
-
Abd-Elsalam K (2003) Bioinformatic tools and guideline for PCR primer design. Afr J Biotechnol 2: 91-95.
-
(2003)
Afr J Biotechnol
, vol.2
, pp. 91-95
-
-
Abd-Elsalam, K.1
-
2
-
-
1942443733
-
Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons
-
Acinas SG, Marcelino LA, Klepac-Ceraj V, Polz MF (2004) Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons. J Bacteriol 186: 2629-2635.
-
(2004)
J Bacteriol
, vol.186
, pp. 2629-2635
-
-
Acinas, S.G.1
Marcelino, L.A.2
Klepac-Ceraj, V.3
Polz, M.F.4
-
3
-
-
67149096055
-
Genomic characterization of methanomicrobiales reveals three classes of methanogens
-
Anderson I, Ulrich L, Lupa B, Susanti D, Porat I, Hooper S, Lykidis A, Sieprawska-Lupa M, Dharmarajan L, Goltsman E, Lapidus A, Saunders E, Han C, Land M, Lucas S, Mukhopadhyay B, Whitman W, Woese C, Bristow J, Kyrpides N (2009) Genomic characterization of methanomicrobiales reveals three classes of methanogens. PLoS ONE 4: 1-9.
-
(2009)
PLoS ONE
, vol.4
, pp. 1-9
-
-
Anderson, I.1
Ulrich, L.2
Lupa, B.3
Susanti, D.4
Porat, I.5
Hooper, S.6
Lykidis, A.7
Sieprawska-Lupa, M.8
Dharmarajan, L.9
Goltsman, E.10
Lapidus, A.11
Saunders, E.12
Han, C.13
Land, M.14
Lucas, S.15
Mukhopadhyay, B.16
Whitman, W.17
Woese, C.18
Bristow, J.19
Kyrpides, N.20
more..
-
4
-
-
0242384034
-
Review and re-analysis of domain-specific 16S primers
-
Baker GC, Smith JJ, Cowan DA (2003) Review and re-analysis of domain-specific 16S primers. J Microbiol Meth 55: 541-555.
-
(2003)
J Microbiol Meth
, vol.55
, pp. 541-555
-
-
Baker, G.C.1
Smith, J.J.2
Cowan, D.A.3
-
5
-
-
46549086940
-
Extremely thermophilic microorganisms for biomass conversion: status and prospects
-
Blumer-Schuette S, Kataeva I, Westpheling J, Adams M, Kelly R (2008) Extremely thermophilic microorganisms for biomass conversion: status and prospects. Curr Opin Biotech 19: 210-217.
-
(2008)
Curr Opin Biotech
, vol.19
, pp. 210-217
-
-
Blumer-Schuette, S.1
Kataeva, I.2
Westpheling, J.3
Adams, M.4
Kelly, R.5
-
6
-
-
64149097786
-
The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments
-
Bustin SA, Benes V, Garson JA, Hellemans J, Huggett J, Kubista M, Mueller R, Nolan T, Pfaffl MW, Shipley GL, Vandesompele J, Wittwer CT (2009) The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. Clin Chem 55: 611-622.
-
(2009)
Clin Chem
, vol.55
, pp. 611-622
-
-
Bustin, S.A.1
Benes, V.2
Garson, J.A.3
Hellemans, J.4
Huggett, J.5
Kubista, M.6
Mueller, R.7
Nolan, T.8
Pfaffl, M.W.9
Shipley, G.L.10
Vandesompele, J.11
Wittwer, C.T.12
-
7
-
-
84864106114
-
Complete sequence analysis of two methanotroph-specific repABC containing plasmids from Methylocystis sp. strain SC2
-
Dam B, Kube M, Dam S, Reinhardt R, Liesacka W (2012) Complete sequence analysis of two methanotroph-specific repABC containing plasmids from Methylocystis sp. strain SC2. Appl Environ Microb 78: 4373-4379.
-
(2012)
Appl Environ Microb
, vol.78
, pp. 4373-4379
-
-
Dam, B.1
Kube, M.2
Dam, S.3
Reinhardt, R.4
Liesacka, W.5
-
8
-
-
0031306196
-
Bacterial artificial chromosome (BAC) library as a tool for physical mapping of the Archaeon Methanosarcina thermophila TM-1
-
Diaz-Perez S, Alatriste-Mondragon F, Hernandez R, Birren B, Gunsalus R (1997) Bacterial artificial chromosome (BAC) library as a tool for physical mapping of the Archaeon Methanosarcina thermophila TM-1. Microb Comp Genomics 2: 275-286.
-
(1997)
Microb Comp Genomics
, vol.2
, pp. 275-286
-
-
Diaz-Perez, S.1
Alatriste-Mondragon, F.2
Hernandez, R.3
Birren, B.4
Gunsalus, R.5
-
9
-
-
42449095289
-
Enumeration of Archaea and Bacteria in seafloor basalt using real-time quantitative PCR and fluorescence microscopy
-
Einen J, Thorseth I, Ovreas L (2008) Enumeration of Archaea and Bacteria in seafloor basalt using real-time quantitative PCR and fluorescence microscopy. FEMS Microbiol Lett 282: 182-187.
-
(2008)
FEMS Microbiol Lett
, vol.282
, pp. 182-187
-
-
Einen, J.1
Thorseth, I.2
Ovreas, L.3
-
10
-
-
0032876852
-
Prokaryotic genome size and SSU rDNA copy number: estimation of microbial relative abundance from a mixed population
-
Fogel G, Collins C, Li J, Brunk C (1999) Prokaryotic genome size and SSU rDNA copy number: estimation of microbial relative abundance from a mixed population. Microbial Ecol 38: 93-113.
-
(1999)
Microbial Ecol
, vol.38
, pp. 93-113
-
-
Fogel, G.1
Collins, C.2
Li, J.3
Brunk, C.4
-
11
-
-
66849138429
-
Design and testing of real-time PCR primers for the quantification of Methanoculleus, Methanosarcina, Methanothermobacter, and a group of uncultured methanogens
-
Franke-Whittle IH, Goberna M, Insam H (2009) Design and testing of real-time PCR primers for the quantification of Methanoculleus, Methanosarcina, Methanothermobacter, and a group of uncultured methanogens. Can J Microbiol 55: 611-616.
-
(2009)
Can J Microbiol
, vol.55
, pp. 611-616
-
-
Franke-Whittle, I.H.1
Goberna, M.2
Insam, H.3
-
12
-
-
0036225678
-
The genome of M. acetivorans reveals extensive metabolic and physiological diversity
-
Galagan JE, Nusbaum C, Roy A, Endrizzi MG, Macdonald P, FitzHugh W, Calvo S, Engels R, Smirnov S, Atnoor D, Brown A, Allen N, Naylor J, Stange-Thomann N, DeArellano K, Johnson R, Linton L, McEwan P, McKernan K, Talamas J, Tirrell A, Ye W, Zimmer A, Barber RD, Cann I, Graham DE, Grahame DA, Guss AM, Hedderich R, Ingram-Smith C, Kuettner HC, Krzycki JA, Leigh JA, Li W, Liu J, Mukhopadhyay B, Reeve JN, Smith K, Springer TA, Umayam LA, White O, White RH, de Macario EC, Ferry JG, Jarrell KF, Jing H, Macario AJL, Paulsen I, Pritchett M, Sowers KR, Swanson RV, Zinder SH, Lander E, Metcalf WW, Birren B (2002) The genome of M. acetivorans reveals extensive metabolic and physiological diversity. Genome Res 12: 532-542.
-
(2002)
Genome Res
, vol.12
, pp. 532-542
-
-
Galagan, J.E.1
Nusbaum, C.2
Roy, A.3
Endrizzi, M.G.4
Macdonald, P.5
FitzHugh, W.6
Calvo, S.7
Engels, R.8
Smirnov, S.9
Atnoor, D.10
Brown, A.11
Allen, N.12
Naylor, J.13
Stange-Thomann, N.14
DeArellano, K.15
Johnson, R.16
Linton, L.17
McEwan, P.18
McKernan, K.19
Talamas, J.20
Tirrell, A.21
Ye, W.22
Zimmer, A.23
Barber, R.D.24
Cann, I.25
Graham, D.E.26
Grahame, D.A.27
Guss, A.M.28
Hedderich, R.29
Ingram-Smith, C.30
Kuettner, H.C.31
Krzycki, J.A.32
Leigh, J.A.33
Li, W.34
Liu, J.35
Mukhopadhyay, B.36
Reeve, J.N.37
Smith, K.38
Springer, T.A.39
Umayam, L.A.40
White, O.41
White, R.H.42
de Macario, E.C.43
Ferry, J.G.44
Jarrell, K.F.45
Jing, H.46
Macario, A.J.L.47
Paulsen, I.48
Pritchett, M.49
Sowers, K.R.50
Swanson, R.V.51
Zinder, S.H.52
Lander, E.53
Metcalf, W.W.54
Birren, B.55
more..
-
13
-
-
33846052601
-
Eukaryotic genome size databases
-
Gregory T, Nicol J, Tamm H, Kullman B, Kullman K, Leitch I, Murray B, Kapraun D, Greilhuber J, Bennett M (2006) Eukaryotic genome size databases. Nucleic Acids Res 35: 332-338.
-
(2006)
Nucleic Acids Res
, vol.35
, pp. 332-338
-
-
Gregory, T.1
Nicol, J.2
Tamm, H.3
Kullman, B.4
Kullman, K.5
Leitch, I.6
Murray, B.7
Kapraun, D.8
Greilhuber, J.9
Bennett, M.10
-
14
-
-
33947270493
-
Chemical and biochemical parameters during composting of lawn clippings with special regard to the efficiency of a compost starter kit
-
Illmer P, Wagner AO, Mair J, Malin C, Farbmacher S (2007) Chemical and biochemical parameters during composting of lawn clippings with special regard to the efficiency of a compost starter kit. Compost Sci Util 15: 40-46.
-
(2007)
Compost Sci Util
, vol.15
, pp. 40-46
-
-
Illmer, P.1
Wagner, A.O.2
Mair, J.3
Malin, C.4
Farbmacher, S.5
-
16
-
-
84871808499
-
Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
-
Klindworth A, Pruesse E, Schweer T, Peplies J, Quast C, Horn M, Glöckner FO (2013) Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies. Nucleic Acids Res 41: 1-11.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 1-11
-
-
Klindworth, A.1
Pruesse, E.2
Schweer, T.3
Peplies, J.4
Quast, C.5
Horn, M.6
Glöckner, F.O.7
-
17
-
-
57149085868
-
Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world
-
Koonin E, Wolf YI (2008) Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world. Nucleic Acids Res 36: 6688-6719.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 6688-6719
-
-
Koonin, E.1
Wolf, Y.I.2
-
18
-
-
76049108938
-
Reduction of accumulated volatile fatty acids by an acetate-degrading enrichment culture
-
Lins P, Malin C, Wagner AO, Illmer P (2010) Reduction of accumulated volatile fatty acids by an acetate-degrading enrichment culture. FEMS Microbiol Ecol 71: 469-478.
-
(2010)
FEMS Microbiol Ecol
, vol.71
, pp. 469-478
-
-
Lins, P.1
Malin, C.2
Wagner, A.O.3
Illmer, P.4
-
19
-
-
84858293841
-
Development and evaluation of inocula combating high acetate concentrations during the start-up of an anaerobic digestion
-
Lins P, Reitschuler C, Illmer P (2012) Development and evaluation of inocula combating high acetate concentrations during the start-up of an anaerobic digestion. Biores Technol 110: 167-173.
-
(2012)
Biores Technol
, vol.110
, pp. 167-173
-
-
Lins, P.1
Reitschuler, C.2
Illmer, P.3
-
20
-
-
41349083576
-
Metabolic, physiological, and ecological diversity of the methanogenic archaea
-
Liu Y, Whitman WB (2008) Metabolic, physiological, and ecological diversity of the methanogenic archaea. Proc Natl Acad Sci USA 1125: 171-189.
-
(2008)
Proc Natl Acad Sci USA
, vol.1125
, pp. 171-189
-
-
Liu, Y.1
Whitman, W.B.2
-
21
-
-
0036856362
-
The mcrA gene as an alternative to 16S rRNA in the phylogenetic analysis of methanogen populations in landfill
-
Luton PE, Wayne JM, Sharp RJ, Riley PW (2002) The mcrA gene as an alternative to 16S rRNA in the phylogenetic analysis of methanogen populations in landfill. Microbiology 148: 3521-3530.
-
(2002)
Microbiology
, vol.148
, pp. 3521-3530
-
-
Luton, P.E.1
Wayne, J.M.2
Sharp, R.J.3
Riley, P.W.4
-
22
-
-
48749108522
-
Ability of DNA-content and DGGE analysis to reflect the performance condition of an anaerobic biowaste fermenter
-
Malin C, Illmer P (2008) Ability of DNA-content and DGGE analysis to reflect the performance condition of an anaerobic biowaste fermenter. Microbiol Res 163: 503-511.
-
(2008)
Microbiol Res
, vol.163
, pp. 503-511
-
-
Malin, C.1
Illmer, P.2
-
23
-
-
84868321538
-
Complete genome sequence of the hydrogenotrophic, methanogenic archaeon Methanoculleus bourgensis strain MS2T, isolated from a sewage sludge digester
-
Maus I, Wibberg D, Stantcheff R, Eikmeyer F, Seffner A, Boelter J, Szczepanowski R, Blom J, Jaenicke S, König H, Pühler A, Schlütera A (2012) Complete genome sequence of the hydrogenotrophic, methanogenic archaeon Methanoculleus bourgensis strain MS2T, isolated from a sewage sludge digester. J Bacteriol 194: 5487-5488.
-
(2012)
J Bacteriol
, vol.194
, pp. 5487-5488
-
-
Maus, I.1
Wibberg, D.2
Stantcheff, R.3
Eikmeyer, F.4
Seffner, A.5
Boelter, J.6
Szczepanowski, R.7
Blom, J.8
Jaenicke, S.9
König, H.10
Pühler, A.11
Schlütera, A.12
-
25
-
-
0027460328
-
Profiling of complex microbial populations by denaturing gradient gel electrophoresis of polymerase chain reaction-amplified genes coding for 16S rRNA
-
Muyzer G, DeWaal EC, Uitterlinden AG (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59: 695-700.
-
(1993)
Appl Environ Microbiol
, vol.59
, pp. 695-700
-
-
Muyzer, G.1
DeWaal, E.C.2
Uitterlinden, A.G.3
-
26
-
-
42149176196
-
Quantification of mcrA by fluorescent PCR in methanogenic and methanotrophic microbial communities
-
Nunoura T, Oida H, Miyazaki J, Miyashita A, Imachi H, Takai K (2008) Quantification of mcrA by fluorescent PCR in methanogenic and methanotrophic microbial communities. FEMS Microbiol Ecol 64: 240-247.
-
(2008)
FEMS Microbiol Ecol
, vol.64
, pp. 240-247
-
-
Nunoura, T.1
Oida, H.2
Miyazaki, J.3
Miyashita, A.4
Imachi, H.5
Takai, K.6
-
27
-
-
37549027613
-
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
-
Pruesse E, Quast C, Knittel K, Fuchs B, Ludwig W, Peplies J, Glöckner FO (2007) SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35: 7188-7196.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 7188-7196
-
-
Pruesse, E.1
Quast, C.2
Knittel, K.3
Fuchs, B.4
Ludwig, W.5
Peplies, J.6
Glöckner, F.O.7
-
28
-
-
84873739311
-
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
-
Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, Peplies J, Glöckner FO (2013) The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res 41: 590-596.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 590-596
-
-
Quast, C.1
Pruesse, E.2
Yilmaz, P.3
Gerken, J.4
Schweer, T.5
Yarza, P.6
Peplies, J.7
Glöckner, F.O.8
-
29
-
-
0034857157
-
A single band does not always represent single bacterial strains in denaturing gradient gel electrophoresis analysis
-
Sekiguchi H, Tomioka N, Nakahara T, Uchiyama H (2001) A single band does not always represent single bacterial strains in denaturing gradient gel electrophoresis analysis. Biotechnol Lett 23: 1205-1208.
-
(2001)
Biotechnol Lett
, vol.23
, pp. 1205-1208
-
-
Sekiguchi, H.1
Tomioka, N.2
Nakahara, T.3
Uchiyama, H.4
-
30
-
-
0346494968
-
Effect of dilution rate on structure of a mesophilic acetate-degrading methanogenic community during continuous cultivation
-
Shigematsu T, Tang Y, Kawaguchi H, Ninomiya K, Kijima J, Kobayashi T, Morimura S, Kida K (2003) Effect of dilution rate on structure of a mesophilic acetate-degrading methanogenic community during continuous cultivation. J Biosci Bioeng 96: 547-558.
-
(2003)
J Biosci Bioeng
, vol.96
, pp. 547-558
-
-
Shigematsu, T.1
Tang, Y.2
Kawaguchi, H.3
Ninomiya, K.4
Kijima, J.5
Kobayashi, T.6
Morimura, S.7
Kida, K.8
-
31
-
-
4544357886
-
16S ribosomal DNA-directed PCR primers for ruminal methanogens and identification of methanogens colonising young lambs
-
Skillman LC, Evans PN, Naylor GE, Morvan B, Jarvis GN, Joblin KN (2004) 16S ribosomal DNA-directed PCR primers for ruminal methanogens and identification of methanogens colonising young lambs. Anaerobe 10: 277-285.
-
(2004)
Anaerobe
, vol.10
, pp. 277-285
-
-
Skillman, L.C.1
Evans, P.N.2
Naylor, G.E.3
Morvan, B.4
Jarvis, G.N.5
Joblin, K.N.6
-
32
-
-
41849122317
-
Methanogenesis from acetate and propionate by thermophilic down-flow anaerobic packed-bed reactor
-
Tatara M, Makiuchi T, Ueno Y, Goto M, Sode K (2008) Methanogenesis from acetate and propionate by thermophilic down-flow anaerobic packed-bed reactor. Biores Technol 99: 4786-4795.
-
(2008)
Biores Technol
, vol.99
, pp. 4786-4795
-
-
Tatara, M.1
Makiuchi, T.2
Ueno, Y.3
Goto, M.4
Sode, K.5
-
33
-
-
3943088401
-
AutoDimer: a screening tool for primer-dimer and hairpin structures
-
Vallone P, Butler J (2004) AutoDimer: a screening tool for primer-dimer and hairpin structures. Biotechniques 37: 226-231.
-
(2004)
Biotechniques
, vol.37
, pp. 226-231
-
-
Vallone, P.1
Butler, J.2
-
34
-
-
79151474980
-
Effects of various fatty acid amendments on a microbial digester community in batch culture
-
Wagner AO, Malin C, Lins P, Illmer P (2011) Effects of various fatty acid amendments on a microbial digester community in batch culture. Waste Manage 31: 431-437.
-
(2011)
Waste Manage
, vol.31
, pp. 431-437
-
-
Wagner, A.O.1
Malin, C.2
Lins, P.3
Illmer, P.4
-
35
-
-
16344363305
-
Group-specific primer and probe sets to detect methanogenic communities using quantitative real-time polymerase chain reaction
-
Yu Y, Lee C, Hwang S (2005) Group-specific primer and probe sets to detect methanogenic communities using quantitative real-time polymerase chain reaction. Biotechnol Bioeng 89: 670-679.
-
(2005)
Biotechnol Bioeng
, vol.89
, pp. 670-679
-
-
Yu, Y.1
Lee, C.2
Hwang, S.3
-
36
-
-
32544443771
-
Use of real-time PCR for group-specific quantification of aceticlastic methanogens in anaerobic processes: population dynamics and community structures
-
Yu Y, Kim J, Hwang S (2006) Use of real-time PCR for group-specific quantification of aceticlastic methanogens in anaerobic processes: population dynamics and community structures. Biotechnol Bioeng 93: 424-433.
-
(2006)
Biotechnol Bioeng
, vol.93
, pp. 424-433
-
-
Yu, Y.1
Kim, J.2
Hwang, S.3
-
37
-
-
33746199793
-
Genomic DNA functions as a universal external standard in quantitative real-time PCR
-
Yun JJ, LE Heisler LE, Hwang IIL, Wilkins O, Lau SK, Hyrcza M, Jayabalasingham B, Jin J, McLaurin J, Tsao MS, Der SD (2006) Genomic DNA functions as a universal external standard in quantitative real-time PCR. Nucleic Acids Res 34: 1-10.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 1-10
-
-
Yun, J.J.1
LE Heisler, L.E.2
Hwang, I.I.L.3
Wilkins, O.4
Lau, S.K.5
Hyrcza, M.6
Jayabalasingham, B.7
Jin, J.8
McLaurin, J.9
Tsao, M.S.10
Der, S.D.11
-
38
-
-
33644776725
-
Applications of real-time polymerase chain reaction for quantification of microorganisms in environmental samples
-
Zhang T, Fang H (2006) Applications of real-time polymerase chain reaction for quantification of microorganisms in environmental samples. Appl Microbiol Biot 70: 281-289.
-
(2006)
Appl Microbiol Biot
, vol.70
, pp. 281-289
-
-
Zhang, T.1
Fang, H.2
-
39
-
-
84860993458
-
The genome characteristics and predicted function of methyl-group oxidation pathway in the obligate aceticlastic methanogens, Methanosaeta spp
-
Zhu J, Zheng H, Ai G, Zhang G, Liu D, Liu X, Dong X (2012) The genome characteristics and predicted function of methyl-group oxidation pathway in the obligate aceticlastic methanogens, Methanosaeta spp. PLoS ONE 7: 1-9.
-
(2012)
PLoS ONE
, vol.7
, pp. 1-9
-
-
Zhu, J.1
Zheng, H.2
Ai, G.3
Zhang, G.4
Liu, D.5
Liu, X.6
Dong, X.7
|