메뉴 건너뛰기




Volumn 4, Issue AUG, 2013, Pages

The human urinary microbiome; bacterial DNA in voided urine of asymptomatic adults

Author keywords

Bladder disease; Bladder microbiome; Microbiological methods; Pyrosequencing; Urinary microbiome

Indexed keywords

BACTERIAL DNA; RNA 16S; RIBOSOME DNA;

EID: 84891520773     PISSN: None     EISSN: 22352988     Source Type: Journal    
DOI: 10.3389/fcimb.2013.00041     Document Type: Article
Times cited : (267)

References (30)
  • 1
    • 85027927719 scopus 로고    scopus 로고
    • Enterotypes of the human gut microbiome
    • doi: 10.1038/nature09944
    • Arumugam, M., Raes, J., Pelletier, E., Le Paslier, D., Yamada, T., Mende, D. R., et al. (2011). Enterotypes of the human gut microbiome. Nature 473, 174-180. doi: 10.1038/nature09944
    • (2011) Nature , vol.473 , pp. 174-180
    • Arumugam, M.1    Raes, J.2    Pelletier, E.3    Le Paslier, D.4    Yamada, T.5    Mende, D.R.6
  • 2
    • 84862149788 scopus 로고    scopus 로고
    • Ageing of the human metaorganism: the microbial counterpart
    • doi: 10.1007/s11357-011-9217-5
    • Biagi, E., Candela, M., Fairweather-Tait, S., Franchechi, C., and Brigidi, P. (2012). Ageing of the human metaorganism: the microbial counterpart. Age 34, 247-267. doi: 10.1007/s11357-011-9217-5
    • (2012) Age , vol.34 , pp. 247-267
    • Biagi, E.1    Candela, M.2    Fairweather-Tait, S.3    Franchechi, C.4    Brigidi, P.5
  • 3
    • 84862684681 scopus 로고    scopus 로고
    • Intestinal commensals: influence on immune system and tolerance to pathogens
    • doi: 10.1016/j.coi.2012.03.002
    • Chervonsky, A. V. (2012). Intestinal commensals: influence on immune system and tolerance to pathogens. Curr. Opin. Immunol. 24, 255-260. doi: 10.1016/j.coi.2012.03.002
    • (2012) Curr. Opin. Immunol. , vol.24 , pp. 255-260
    • Chervonsky, A.V.1
  • 4
    • 84866423583 scopus 로고    scopus 로고
    • The human gut microbiome: current knowledge, challenges, and future directions
    • doi: 10.1016/j.trsl.2012.05.003
    • Dave, M., Higgins, P. D. R., Middha, S., and Rioux, K. (2012). The human gut microbiome: current knowledge, challenges, and future directions. Transl. Res. 160, 246-257. doi: 10.1016/j.trsl.2012.05.003
    • (2012) Transl. Res. , vol.160 , pp. 246-257
    • Dave, M.1    Higgins, P.D.R.2    Middha, S.3    Rioux, K.4
  • 5
    • 79952756960 scopus 로고    scopus 로고
    • Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation
    • doi: 10.1073/pnas.1000087107
    • Dethlefsen, L., and Relman, D. A. (2011). Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation. Proc. Natl. Acad. Sci. U.S.A. 108, 4554-4561. doi: 10.1073/pnas.1000087107
    • (2011) Proc. Natl. Acad. Sci. U. S. A. , vol.108 , pp. 4554-4561
    • Dethlefsen, L.1    Relman, D.A.2
  • 6
    • 79955941309 scopus 로고    scopus 로고
    • The microbial communities in male first catch urine are highly similar to those in paired urethral swab specimens
    • doi: 10.1371/journal.pone.0019709
    • Dong, Q., Nelson, D. E., Toh, E., Diao, L., Gao, X., Fortenberry, J. D., et al. (2011). The microbial communities in male first catch urine are highly similar to those in paired urethral swab specimens. PLoS ONE 6:e19709. doi: 10.1371/journal.pone.0019709
    • (2011) PLoS ONE , vol.6
    • Dong, Q.1    Nelson, D.E.2    Toh, E.3    Diao, L.4    Gao, X.5    Fortenberry, J.D.6
  • 7
    • 84863779749 scopus 로고    scopus 로고
    • Daily follow-up of bacterial communities in the human gut reveals stable composition and host-specific patterns of Interaction
    • doi: 10.1111/j.1574-6941.2012.01368.x
    • Durbán, A., Abellán, J. J., Jiménez-Hernández, N., Latorre, A., and Moya, A. (2012). Daily follow-up of bacterial communities in the human gut reveals stable composition and host-specific patterns of Interaction. FEMS Microbiolol. Ecol. 81, 427-437. doi: 10.1111/j.1574-6941.2012.01368.x
    • (2012) FEMS Microbiolol. Ecol. , vol.81 , pp. 427-437
    • Durbán, A.1    Abellán, J.J.2    Jiménez-Hernández, N.3    Latorre, A.4    Moya, A.5
  • 8
    • 79961181125 scopus 로고    scopus 로고
    • UCHIME improves sensitivity and speed of chimera detection
    • doi: 10.1093/bioinformatics/btr381
    • Edgar, R. C., Hass, B. J., Clemente, J. C., Quince, C., and Knight, R. (2011). UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 27, 2194-2200. doi: 10.1093/bioinformatics/btr381
    • (2011) Bioinformatics , vol.27 , pp. 2194-2200
    • Edgar, R.C.1    Hass, B.J.2    Clemente, J.C.3    Quince, C.4    Knight, R.5
  • 9
    • 84865339168 scopus 로고    scopus 로고
    • Intergrated next-generation sequencing of the 16S rDNA and metaproteomics differentiate the healthy urine microbiome from asymptomatic bacteriuria in neuropathic bladder associated with spinal cord injury
    • doi: 10.1186/1479-5876-10-174
    • Fouts, D. E., Pieper, R., Szpakowski, S., Pohl, H., Knoblach, S., Suh, M.-J., et al. (2012). Intergrated next-generation sequencing of the 16S rDNA and metaproteomics differentiate the healthy urine microbiome from asymptomatic bacteriuria in neuropathic bladder associated with spinal cord injury. J. Transl. Med. 10, 174. doi: 10.1186/1479-5876-10-174
    • (2012) J. Transl. Med. , vol.10 , pp. 174
    • Fouts, D.E.1    Pieper, R.2    Szpakowski, S.3    Pohl, H.4    Knoblach, S.5    Suh, M.-J.6
  • 10
    • 0033281692 scopus 로고    scopus 로고
    • Common errors in diagnosis and management of urinary tract infection I: Pathophysiology and diagnostic techniques
    • doi: 10.1093/ndt/14.11.2746
    • Franz, M., and Hörl, W. H. (1999). Common errors in diagnosis and management of urinary tract infection. I: Pathophysiology and diagnostic techniques. Nephrol. Dial. Transplant. 11, 2746-2753. doi: 10.1093/ndt/14.11.2746
    • (1999) Nephrol. Dial. Transplant. , vol.11 , pp. 2746-2753
    • Franz, M.1    Hörl, W.H.2
  • 11
    • 33846656968 scopus 로고    scopus 로고
    • Immunosenescence of ageing
    • doi: 10.1002/path.2104
    • Gruver, A. L., Hudson, L., and Sempowski, G. D. (2007). Immunosenescence of ageing. J. Pathol. 211, 144-156. doi: 10.1002/path.2104
    • (2007) J. Pathol. , vol.211 , pp. 144-156
    • Gruver, A.L.1    Hudson, L.2    Sempowski, G.D.3
  • 12
    • 0037425743 scopus 로고    scopus 로고
    • Gut flora in health and disease
    • doi: 10.1016/S0140-6736(03)12489-0
    • Guarner, F., and Malagelada, J.-R. (2003). Gut flora in health and disease. Lancet 361, 512-519. doi: 10.1016/S0140-6736(03)12489-0
    • (2003) Lancet , vol.361 , pp. 512-519
    • Guarner, F.1    Malagelada, J.-R.2
  • 13
    • 84897923583 scopus 로고    scopus 로고
    • Health Protection Agency UK Standardsfor Microbiology Investigations
    • B41, Issue no.7. Available online at (Accessed 28th, January 2012)
    • Health Protection Agency. (2012). UK Standardsfor Microbiology Investigations. Investigation of Urine. B41, Issue no.7. Available online at: http://www.hpa.org.uk/webFile/HPAweb_C/1317132858791 (Accessed 28th, January 2012).
    • (2012) Investigation of Urine
  • 14
    • 40749083140 scopus 로고    scopus 로고
    • Hidden pathogens uncovered: metagenomic analysis of urinary tract infections
    • doi: 10.1111/j.1439-0272.2007.00830.x
    • Imirzalioglu, C., Hain, T., Chakraborty, T., and Domann, E. (2008). Hidden pathogens uncovered: metagenomic analysis of urinary tract infections. Andrologia 40, 66-71. doi: 10.1111/j.1439-0272.2007.00830.x
    • (2008) Andrologia , vol.40 , pp. 66-71
    • Imirzalioglu, C.1    Hain, T.2    Chakraborty, T.3    Domann, E.4
  • 15
    • 79960854386 scopus 로고    scopus 로고
    • Intestinal microbiota in healthy adults: temporal analysis reveals individual and common core and relation to intestinal symptoms
    • doi: 10.1371/journal.pone.0023035
    • Jalanka-Tuovinen, J., Salonen, A., Nikkilä, J., Immonen, O., Kekkonen, R., Lahti, L., et al. (2011). Intestinal microbiota in healthy adults: temporal analysis reveals individual and common core and relation to intestinal symptoms. PLoS ONE 6:e23035. doi: 10.1371/journal.pone.0023035
    • (2011) PLoS ONE , vol.6
    • Jalanka-Tuovinen, J.1    Salonen, A.2    Nikkilä, J.3    Immonen, O.4    Kekkonen, R.5    Lahti, L.6
  • 16
    • 0035173421 scopus 로고    scopus 로고
    • Rrndb: the ribosomal RNA operon copy number database
    • doi: 10.1093/nar/29.1.181
    • Klappenbach, J. A., Saxman, P. R., Cole, J. R., and Schmidt, T. M. (2001). Rrndb: the ribosomal RNA operon copy number database. Nucleic Acid Res. 29, 181-184. doi: 10.1093/nar/29.1.181
    • (2001) Nucleic Acid Res , vol.29 , pp. 181-184
    • Klappenbach, J.A.1    Saxman, P.R.2    Cole, J.R.3    Schmidt, T.M.4
  • 17
    • 0034638067 scopus 로고    scopus 로고
    • Outpatient urine culture - does collection technique matter?
    • doi: 10.1001/archinte.160.16.2537 Med
    • Lifshitz, E., and Kramer, L. (2000). Outpatient urine culture - does collection technique matter? Arch. Intern. Med. 160, 2537-2540. doi: 10.1001/archinte.160.16.2537
    • (2000) Arch Intern , vol.160 , pp. 2537-2540
    • Lifshitz, E.1    Kramer, L.2
  • 18
    • 80051927741 scopus 로고    scopus 로고
    • Interpreting the epidemiology and natural history of bacterial vaginosis: are we still confused?
    • doi: 10.1016/j.anaerobe.2011.03.016
    • Marrazzo, J. M. (2011). Interpreting the epidemiology and natural history of bacterial vaginosis: are we still confused? Anaerobe 17, 186-190. doi: 10.1016/j.anaerobe.2011.03.016
    • (2011) Anaerobe , vol.17 , pp. 186-190
    • Marrazzo, J.M.1
  • 19
    • 78649642421 scopus 로고    scopus 로고
    • Characteristic male urine microbiomes associate with asymptomatic sexually transmitted infection
    • doi: 10.1371/journal.pone.0014116
    • Nelson, D. E., Van Der Pol, B., Dong, Q., Revanna, K. V., Fan, B., Easwaran, S., et al. (2010). Characteristic male urine microbiomes associate with asymptomatic sexually transmitted infection. PLoS ONE 5:e14116. doi: 10.1371/journal.pone.0014116
    • (2010) PLoS ONE , vol.5
    • Nelson, D.E.1    Van Der Pol, B.2    Dong, Q.3    Revanna, K.V.4    Fan, B.5    Easwaran, S.6
  • 20
    • 84861653143 scopus 로고    scopus 로고
    • Changes in the intestinal microbiota from adulthood through to old age
    • doi: 10.1111/j.1469-0691.2012.03867.x
    • O'Toole, P. W. (2012). Changes in the intestinal microbiota from adulthood through to old age. Clin. Microbiol. Infect. 18(Suppl. 4), 44-46. doi: 10.1111/j.1469-0691.2012.03867.x
    • (2012) Clin. Microbiol. Infect. , vol.18 , Issue.SUPPL. 4 , pp. 44-46
    • O'Toole, P.W.1
  • 21
    • 0344465333 scopus 로고    scopus 로고
    • Soehngenia saccharolytica gen. nov., sp. nov. and Clostridium amygdalinum sp. nov., two novel anaerobic, benzaldehyde-converting bacteria
    • doi: 10.1099/ijs.0.02668-0
    • Parshina, S. N., Kleerebezem, R., Sanz, J. L., Lettinga, G., Nozhevnikova, A. N., Kostrikina, N. A., et al. (2003). Soehngenia saccharolytica gen. nov., sp. nov. and Clostridium amygdalinum sp. nov., two novel anaerobic, benzaldehyde-converting bacteria. Int. J. Syst. Evol. Micr. 53, 1791-1799. doi: 10.1099/ijs.0.02668-0
    • (2003) Int. J. Syst. Evol. Micr. , vol.53 , pp. 1791-1799
    • Parshina, S.N.1    Kleerebezem, R.2    Sanz, J.L.3    Lettinga, G.4    Nozhevnikova, A.N.5    Kostrikina, N.A.6
  • 22
    • 58649092400 scopus 로고    scopus 로고
    • Childhood symptoms and events in women with interstitial cystitis/painful bladder syndrome
    • doi: 10.1016/j.urology.2008.09.014
    • Peters, K. M., Killinger, K. A., and Ibrahim, I. A. (2009). Childhood symptoms and events in women with interstitial cystitis/painful bladder syndrome. Urology 73, 258-262. doi: 10.1016/j.urology.2008.09.014
    • (2009) Urology , vol.73 , pp. 258-262
    • Peters, K.M.1    Killinger, K.A.2    Ibrahim, I.A.3
  • 23
    • 80054905060 scopus 로고    scopus 로고
    • The human microbiome project in 2011 and beyond
    • doi: 10.1016/j.chom.2011.10.001
    • Proctor, L. M. (2011). The human microbiome project in 2011 and beyond. Cell Host Microbe. 10, 287-291. doi: 10.1016/j.chom.2011.10.001
    • (2011) Cell Host Microbe , vol.10 , pp. 287-291
    • Proctor, L.M.1
  • 24
    • 72949107142 scopus 로고    scopus 로고
    • Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
    • doi: 10.1128/AEM.01541-09
    • Schloss, P. D., Westcott, S. L., Ryabin, T., Hall, J. R., Hartmann, M., Hollister, E. B., et al. (2009). Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl. Environ. Microbiol. 75, 7537-7541. doi: 10.1128/AEM.01541-09
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 7537-7541
    • Schloss, P.D.1    Westcott, S.L.2    Ryabin, T.3    Hall, J.R.4    Hartmann, M.5    Hollister, E.B.6
  • 25
    • 0032780990 scopus 로고    scopus 로고
    • Evaluation of the leukocyte esterase and nitrate urine dipstick screening tests for detection of bacteriuria in women with suspected uncomplicated urinary tract infections
    • Semeniuk, H., and Church, D. (1999). Evaluation of the leukocyte esterase and nitrate urine dipstick screening tests for detection of bacteriuria in women with suspected uncomplicated urinary tract infections. J. Clin. Microbiol. 37, 3051-3052.
    • (1999) J. Clin. Microbiol. , vol.37 , pp. 3051-3052
    • Semeniuk, H.1    Church, D.2
  • 26
    • 80055117479 scopus 로고    scopus 로고
    • assessing diversity of the female urine microbiota by high throughput sequencing of 16S rDNA amplicons
    • doi: 10.1186/1471-2180-11-244
    • Siddiqui, H., Nederbragt, A. J., Lagesen, K., Jeansson, S. L., and Jakobsen, K. S. (2011). assessing diversity of the female urine microbiota by high throughput sequencing of 16S rDNA amplicons. BMC Microbiol. 11:244. doi: 10.1186/1471-2180-11-244
    • (2011) BMC Microbiol , vol.11 , pp. 244
    • Siddiqui, H.1    Nederbragt, A.J.2    Lagesen, K.3    Jeansson, S.L.4    Jakobsen, K.S.5
  • 27
    • 77949285392 scopus 로고    scopus 로고
    • Human intestinal microbiota and healthy ageing
    • doi: 10.1016/j.arr.2009.10.004
    • Tiihonen, K., Ouwehand, A. C., and Rautonen, N. (2010). Human intestinal microbiota and healthy ageing. Ageing Res. Rev. 9, 107-116. doi: 10.1016/j.arr.2009.10.004
    • (2010) Ageing Res. Rev. , vol.9 , pp. 107-116
    • Tiihonen, K.1    Ouwehand, A.C.2    Rautonen, N.3
  • 28
    • 2342628711 scopus 로고    scopus 로고
    • Laboratory diagnosis of urinary tract infections in adult patients
    • doi: 10.1086/383029
    • Wilson, M. L., and Gaido, L. (2004). Laboratory diagnosis of urinary tract infections in adult patients. Clin. Infect. Dis. 38, 1150-1158. doi: 10.1086/383029
    • (2004) Clin. Infect. Dis. , vol.38 , pp. 1150-1158
    • Wilson, M.L.1    Gaido, L.2
  • 29
    • 84858591675 scopus 로고    scopus 로고
    • Evidence of uncultivated bacteria in the adult female bladder
    • doi: 10.1128/JCM.05852-11
    • Wolfe, A. J., Toh, E., Shibata, N., Rong, R., Kenton, K., Fitzgerald., et al. (2012). Evidence of uncultivated bacteria in the adult female bladder. J. Clin. Microbiol. 50, 1376-1383. doi: 10.1128/JCM.05852-11
    • (2012) J. Clin. Microbiol. , vol.50 , pp. 1376-1383
    • Wolfe, A.J.1    Toh, E.2    Shibata, N.3    Rong, R.4    Kenton, K.5    Fitzgerald et, al.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.