Hidden pathogens uncovered: Metagenomic analysis of urinary tract infections

Andrologia

Volumn 40, Issue 2, 2008, Pages 66-71

  Imirzalioglu, C ^a   Hain, T ^a   Chakraborty, T ^a   Domann, E ^a  

^a JUSTUS LIEBIG UNIVERSITY   (Germany)

Author keywords

DHPLC; Metagenome; Polymicrobial infection; Urinary tract infection

Indexed keywords

DNA 16S; LEUKOCYTE ELASTASE;

ANAEROBIC BACTERIUM; BACTERIUM CONTAMINATION; BACTERIUM CULTURE; BACTERIUM DETECTION; BIOINFORMATICS; CONFERENCE PAPER; DENATURING HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; ENTEROCOCCUS FAECALIS; ESCHERICHIA COLI; FECES; GENE SEQUENCE; GENOMICS; HUMAN; INDUSTRIALIZATION; LABORATORY TEST; NONHUMAN; POLYMERASE CHAIN REACTION; URINARY TRACT INFECTION;

ANIMALS; BACTERIA, ANAEROBIC; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; COMPUTATIONAL BIOLOGY; CULTURE TECHNIQUES; DNA, BACTERIAL; ENTEROCOCCUS FAECALIS; ESCHERICHIA COLI; GENOME, BACTERIAL; HUMANS; MALE; POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA; URINARY TRACT INFECTIONS;

EID: 40749083140     PISSN: 03034569     EISSN: 14390272     Source Type: Journal    
DOI: 10.1111/j.1439-0272.2007.00830.x     Document Type: Conference Paper

References (38)

1. Abbott SL (2007) Klebsiella, Enterobacter, Citrobacter, Serratia, Plesiomonas, and other Enterobacteriaceae. In : Manual of Clinical Microbiology 9th edition. Murray PR, Baron EJ, Jorgensen JH, Landry ML, Pfaller MA (eds). ASM Press, Washington, DC, pp 698 715.
2. Balmelli T, Stamm J, Dolina-Giudici M, Peduzzi R, Piffaretti-Yanez A, Balerna M (1994) Bacteroides ureolyticus in men consulting for infertility. Andrologia 26 : 35 38.
3. Cannon JP, Lee TA, Bolanos JT, Danziger LH (2005) Pathogenic relevance of Lactobacillus: a retrospective review of over 200 cases. Eur J Microbiol Infect Dis 24 : 31 40.
4. CDC, Centers for Disease Control and Prevention (2007) Division of Bacterial and Mycotic Diseases. Urinary Tract Infections, Atlanta, USA.
5. Citron DM, Poxton IR, Baron EJ (2007) Bacteroides, Porphyromonas, Prevotella, Fusobacterium, and other anaerobic gram-negative rods. In : Manual of Clinical Microbiology 9th edition. Murray PR, Baron EJ, Jorgensen JH, Landry ML, Pfaller MA (eds). ASM Press, Washington, DC, pp 911 932.
6. Collins MD, Lawson PA, Monasterio R, Falsen E, Sjöden B, Facklam RR (1998) Facklamia ignava sp. nov., isolated from human clinical specimens. J Clin Microbiol 36 : 2146 2148.
7. Cryan B, Azadian BS, Dunwoody GW, Richards PG (1991) Epidural abscess due to Streptococcus milleri and Bifidobacterium species. J Infect 223 : 214 215.
8. Domann E, Hong G, Imirzalioglu C, Turschner S, Kühle J, Watzel C, Hain T, Hossain H, Chakraborty T (2003) Culture-independent identification of pathogenic bacteria and polymicrobial infections in the genitourinary tract of renal transplant recipients. J Clin Microbiol 41 : 5500 5510.
9. Drancourt M, Bollet C, Carta A, Rousselier P (2001) Phylogenetic analyses of Klebsiella species delineate Klebsiella and Raoultella gen. nov., with description of Raoultella ornithinolytica comb. nov., Raoultella terrigena comb. nov. and Raoultella planticola comb. nov. Int J Syst Evol Microbiol 51 : 925 932.
10. Drancourt M, Berger P, Raoult D (2004) Systematic 16S rRNA gene sequencing of atypical clinical isolates identified 27 new bacterial species associated with humans. J Clin Microbiol 42 : 2197 2202.
11. Duerden BI (1993) Black-pigmented gram-negative anaerobes in genito-urinary tract and pelvic infections. FEMS Immunol Med Microbiol 6 : 223 227.
12. Egwari L, Rotimi VO, Abudu OO, Coker AO (1995) A study of the anaerobic bacterial flora of the female genital tract in health and disease. Cent Afr J Med 41 : 391 397.
13. Eisenstadt J, Washington JA (1996) Diagnostic microbiology for bacteria and yeasts causing urinary tract infection. In : Urinary Tract Infections - Molecular Pathogenesis and Clinical Management. Mobley HLT, Warren JW (eds). ASM Press, Washington, DC, pp 29 66.
14. Farrow JA, Lawson PA, Hippe H, Gauglitz U, Collins MD (1995) Phylogenetic evidence that the gram-negative nonsporulating bacterium Tissierella (Bacteroides) praeacuta is a member of the Clostridium subphylum of the gram-positive bacteria and description of Tissierella creatinini sp. nov. Int J Syst Bacteriol 45 : 436 440.
15. Fredricks DN, Fiedler TL, Marrazzo JM (2005) Molecular identification of bacteria associated with bacterial vaginosis. N Engl J Med 353 : 1899 18911.
16. Fredricks DN, Fiedler TL, Thomas KK, Oakley BB, Marrazzo JM (2008) Targeted polymerase-chain-reaction for the detection of vaginal bacteria associated with bacterial vaginosis. J Clin Microbiol [Epub ahead of print].
17. Geissdorfer W, Bohmer C, Pelz K, Schoerner C, Frobenius W, Bogdan C (2003) Tuboovarian abscess caused by Atopobium vaginae following transvaginal oocyte recovery. J Clin Microbiol 41 : 2788 2790.
18. Gill SR, Pop M, Deboy RT, Eckburg PB, Turnbaugh PJ, Samuel BS, Gordon JI, Relman DA, Fraser-Liggett CM, Nelson KE (2006) Metagenomic analysis of the human distal gut microbiome. Science 312 : 1355 1359.
19. Gonzalez Pedraza Aviles A, Ortiz Zaragoza MC, Irigoyen Coria A (1999) Bacterial vaginosis a "broad overview". Rev Latinoam Microbiol 41 : 25 34.
20. Green SL (1978) Case report: fatal anaerobic pulmonary infection due to Bifidobacterium eriksonii. Postgrad Med 63 : 187 188, 190, 192.
21. Greub G, Raoult D (2002) "Actinobaculum massiliae," a new species causing chronic urinary tract infection. J Clin Microbiol 40 : 3938 3941.
22. Hitti J, Hillier SL, Agnew KJ, Krohn MA, Reisner DP, Eschenbach DA (2001) Vaginal indicators of amniotic fluid in preterm labor. Obstet Gynecol 97 : 211 219.
23. Holst E, Goffeng AR, Andersch B (1994) Bacterial vaginosis and vaginal microorganisms in idiopathic premature labor and association with pregnancy outcome. J Clin Microbiol 32 : 176 186.
24. Könönen E, Wade WG (2007) Propionibacterium, Lactobacillus, Actinomyces, and other non-spore-forming anaerobic gram-positive rods. In : Manual of Clinical Microbiology 9th edition. Murray PR, Baron EJ, Jorgensen JH, Landry ML, Pfaller MA (eds). ASM Press, Washington, DC, pp 872 888.
25. Mai V, Morris JG Jr. (2004) Colonic bacterial flora: changing understandings in the molecular age. J Nutr 134 : 459 464.
26. Nataro JP, Bopp CA, Fields PI, Kaper JB, Strockbine NA (2007) Escherichia, Shigella, and Salmonella. In : Manual of Clinical Microbiology 9th edition. Murray PR, Baron EJ, Jorgensen JH, Landry ML, Pfaller MA (eds). ASM Press, Washington, DC, pp. 670 687.
27. Ouwehand AC, Salminen S, Isolauri E (2002) Probiotics: an overview of beneficial effects. Antonie van Leeuwenhoek 82 : 279 289.
28. Rodriguez-Jovita M, Collins MD, Sjoden B, Falsen E (1999) Characterization of a novel Atopobium isolate from human vagina: description of Atopobium vaginae sp. nov. Int J Syst Bacteriol 49 : 1573 1576.
29. Ruoff KL (2007) Aerococcus, Abiotrophia, and other aerobic catalase-negative, gram-positive cocci. In : Manual of Clinical Microbiology 9th edition. Murray PR, Baron EJ, Jorgensen JH, Landry ML, Pfaller MA (eds). ASM Press, Washington, DC, pp 443 454.
30. Soleman N, Laferl H, Kneifel W, Tucek G, Budschedl E, Weber H, Pichler H, Mayer HK (2003) How safe is safe? - A case of Lactobacillus paracasei ssp. paracasei endocarditis and discussion of the safety of lactic acid bacteria. Scand J Infect Dis 35 : 759 762.
31. Song Y, Finegold SM (2007) Peptostreptococcus, Finegoldia, Anaerococcus, Peptoniphilus, Veillonella, and other anaerobic cocci. In : Manual of Clinical Microbiology 9th edition. Murray PR, Baron EJ, Jorgensen JH, Landry ML, Pfaller MA (eds). ASM Press, Washington, DC, pp 862 871.
32. Stackebrandt E, Schumann P, Schaal KP, Weiss N (2002) Propionimicrobium gen. nov., a new genus to accommodate Propionibacterium lymphophilum (Torrey 1916) Johnson and Cummins 1972, 1057AL as Propionimicrobium lymphophilum comb. nov. Int J Syst Evol Microbiol 52 : 1925 1927.
33. Tash K (2005) Rahnella aquatilis bacteraemia from a suspected urinary source. J Clin Microbiol 43 : 2526 2528.
34. Teixeira LM, Da Gloria Siqueira Carvalho M, Facklam RR (2007) Enterococcus. In : Manual of Clinical Microbiology 9th edition. Murray PR, Baron EJ, Jorgensen JH, Landry ML, Pfaller MA (eds). ASM Press, Washington, DC, pp 430 442.
35. Waghorn DJ (2004) Actinobaculum massiliae: a new cause of superficial skin infection. J Infect 48 : 276 277.
36. Warren JW (1996) Clinical presentations and epidemiology of urinary tract infection. In : Urinary Tract Infections - Molecular Pathogenesis and Clinical Management. Mobley HLT, Warren JW (eds). ASM Press, Washington, DC, pp. 3 27.
37. Wildeboer-Veloo AC, Harmsen HJ, Welling GW, Degener JE (2008) Development of 16S rRNA-based probes for the identification of gram-positive anaerobic cocci isolated from human clinical specimens. Clin Microbiol Infect 13 : 985 992.
38. Woolley PD (2000) Anaerobic bacteria and non-gonococcal urethritis. Int J STD AIDS 11 : 347 348.