-
1
-
-
39149096545
-
Dynamic I-V curves are reliable predictors of naturalistic pyramidal-neuron voltage traces
-
doi: 10.1152/jn.01107.2007
-
Badel, L., Lefort, S., Brette, R., Petersen, C. C., Gerstner, W., and Richardson, M. J. (2008). Dynamic I-V curves are reliable predictors of naturalistic pyramidal-neuron voltage traces. J. Neurophysiol. 99, 656-666. doi: 10.1152/jn.01107.2007
-
(2008)
J. Neurophysiol
, vol.99
, pp. 656-666
-
-
Badel, L.1
Lefort, S.2
Brette, R.3
Petersen, C.C.4
Gerstner, W.5
Richardson, M.J.6
-
2
-
-
0038483826
-
Emergence of scaling in random networks
-
doi: 10.1126/science.286.5439.509
-
Barabasi, A. L., and Albert, R. (1999). Emergence of scaling in random networks. Science 286, 509-512. doi: 10.1126/science.286.5439.509
-
(1999)
Science
, vol.286
, pp. 509-512
-
-
Barabasi, A.L.1
Albert, R.2
-
3
-
-
79952376773
-
Network anatomy and in vivo physiology of visual cortical neurons
-
doi: 10.1038/nature09802
-
Bock, D. D., Lee, W. C., Kerlin, A. M., Andermann, M. L., Hood, G., Wetzel, A. W., et al. (2011). Network anatomy and in vivo physiology of visual cortical neurons. Nature 471, 177-182. doi: 10.1038/nature09802
-
(2011)
Nature
, vol.471
, pp. 177-182
-
-
Bock, D.D.1
Lee, W.C.2
Kerlin, A.M.3
Andermann, M.L.4
Hood, G.5
Wetzel, A.W.6
-
4
-
-
83455179103
-
Local diversity and ine-scale organization of receptive fields in mouse visual cortex
-
doi: 10.1523/JNEUROSCI.2974-11.2011
-
Bonin, V., Histed, M. H., Yurgenson, S., and Reid, R. C. (2011). Local diversity and ine-scale organization of receptive fields in mouse visual cortex. J. Neurosci. 31, 8506-18521. doi: 10.1523/JNEUROSCI.2974-11.2011
-
(2011)
J. Neurosci
, vol.31
, pp. 8506-18521
-
-
Bonin, V.1
Histed, M.H.2
Yurgenson, S.3
Reid, R.C.4
-
5
-
-
79952380642
-
Wiring specificity n the direction-selectivity circuit of the retina
-
doi: 0.1038/nature09818
-
Briggman, K. L., Helmstaedter, M., and Denk, W. (2011). Wiring specificity n the direction-selectivity circuit of the retina. Nature 471, 183-188. doi: 0.1038/nature09818
-
(2011)
Nature
, vol.471
, pp. 183-188
-
-
Briggman, K.L.1
Helmstaedter, M.2
Denk, W.3
-
6
-
-
0034006515
-
Dynamics of sparsely connected networks of excitatory nd inhibitory spiking neurons
-
doi: 0.1023/A:1008925309027
-
Brunel, N. (2000). Dynamics of sparsely connected networks of excitatory nd inhibitory spiking neurons. J. Comput. Neurosci. 8, 183-208. doi: 0.1023/A:1008925309027
-
(2000)
J. Comput. Neurosci
, vol.8
, pp. 183-208
-
-
Brunel, N.1
-
7
-
-
11144355852
-
Large-scale recording of neuronal ensembles
-
doi: 10.1038/nn1233
-
Buzsaki, G. (2004). Large-scale recording of neuronal ensembles. Nat. Neurosci. 7, 446-451. doi: 10.1038/nn1233
-
(2004)
Nat. Neurosci
, vol.7
, pp. 446-451
-
-
Buzsaki, G.1
-
8
-
-
84880511705
-
Behavior-dependent recruitment of long-range projection neurons in somatosensory cortex
-
doi: 10.1038/nature12236
-
Chen, J. L., Carta, S., Soldado-Magraner, J., Schneider, B. L., and Helmchen, F. (2013a). Behavior-dependent recruitment of long-range projection neurons in somatosensory cortex. Nature 499, 336-340. doi: 10.1038/nature12236
-
(2013)
Nature
, vol.499
, pp. 336-340
-
-
Chen, J.L.1
Carta, S.2
Soldado-Magraner, J.3
Schneider, B.L.4
Helmchen, F.5
-
9
-
-
84880427381
-
Ultrasensitive fluorescent proteins for imaging neuronal activity
-
doi: 10.1038/nature12354
-
Chen, T. W., Wardill, T. J., Sun, Y., Pulver, S. R., Renninger, S. L., Baohan, A., et al. (2013b). Ultrasensitive fluorescent proteins for imaging neuronal activity. Nature 499, 295-300. doi: 10.1038/nature12354
-
(2013)
Nature
, vol.499
, pp. 295-300
-
-
Chen, T.W.1
Wardill, T.J.2
Sun, Y.3
Pulver, S.R.4
Renninger, S.L.5
Baohan, A.6
-
10
-
-
84870026615
-
LOTOS-based two-photon calcium imaging of dendritic spines in vivo
-
doi: 10.1038/nprot.2012.106
-
Chen, X., Leischner, U., Varga, Z., Jia, H., Deca, D., Rochefort, N. L., et al. (2012). LOTOS-based two-photon calcium imaging of dendritic spines in vivo. Nat. Protoc. 7, 1818-1829. doi: 10.1038/nprot.2012.106
-
(2012)
Nat. Protoc
, vol.7
, pp. 1818-1829
-
-
Chen, X.1
Leischner, U.2
Varga, Z.3
Jia, H.4
Deca, D.5
Rochefort, N.L.6
-
11
-
-
65549085067
-
Power-law distributions in empirical data
-
doi: 10.1137/070710111
-
Clauset, A., Shalizi, C. R., and Newman, M. E. J. (2009). Power-law distributions in empirical data. Siam Rev. 51, 661-703. doi: 10.1137/070710111
-
(2009)
Siam Rev
, vol.51
, pp. 661-703
-
-
Clauset, A.1
Shalizi, C.R.2
Newman, M.E.J.3
-
13
-
-
0032577379
-
Optimizing sound features for cortical neurons
-
doi: 10.1126/sci-ence.280.5368.1439
-
Decharms, R. C., Blake, D. T., and Merzenich, M. M. (1998). Optimizing sound features for cortical neurons. Science 280, 1439-1443. doi: 10.1126/sci-ence.280.5368.1439
-
(1998)
Science
, vol.280
, pp. 1439-1443
-
-
Decharms, R.C.1
Blake, D.T.2
Merzenich, M.M.3
-
14
-
-
48949120509
-
High frequency action potential bursts (>or= 100 Hz) in L2/3 and L5B thick tufted neurons in anaesthetized and awake rat primary somatosensory cortex
-
doi: 10.1113/jphysiol.2008.155580
-
De Kock, C. P., and Sakmann, B. (2008). High frequency action potential bursts (>or= 100 Hz) in L2/3 and L5B thick tufted neurons in anaesthetized and awake rat primary somatosensory cortex. J. Physiol. 586, 3353-3364. doi: 10.1113/jphysiol.2008.155580
-
(2008)
J. Physiol
, vol.586
, pp. 3353-3364
-
-
de Kock, C.P.1
Sakmann, B.2
-
15
-
-
70449382583
-
Functional clustering of neurons in motor cortex determined by cellular resolution imaging in awake behaving mice
-
doi: 10.1523/JNEUROSCI.2985-09.2009
-
Dombeck, D. A., Graziano, M. S., and Tank, D. W. (2009). Functional clustering of neurons in motor cortex determined by cellular resolution imaging in awake behaving mice. J. Neurosci. 29, 13751-13760. doi: 10.1523/JNEUROSCI.2985-09.2009
-
(2009)
J. Neurosci
, vol.29
, pp. 13751-13760
-
-
Dombeck, D.A.1
Graziano, M.S.2
Tank, D.W.3
-
16
-
-
84857686815
-
Towards reliable spike-train recordings from thousands of neurons with multielectrodes
-
doi: 10.1016/j.conb.2011.10.001
-
Einevoll, G. T., Franke, F., Hagen, E., Pouzat, C., and Harris, K. D. (2011). Towards reliable spike-train recordings from thousands of neurons with multielectrodes. Curr. Opin. Neurobiol. 22, 11-17. doi: 10.1016/j.conb.2011.10.001
-
(2011)
Curr. Opin. Neurobiol
, vol.22
, pp. 11-17
-
-
Einevoll, G.T.1
Franke, F.2
Hagen, E.3
Pouzat, C.4
Harris, K.D.5
-
17
-
-
65149097128
-
Enhanced fluorescence signal in nonlinear microscopy through supplementary fiber-optic light collection
-
doi: 10.1364/OE.17.006421
-
Engelbrecht, C. J., Gobel, W., and Helmchen, F. (2009). Enhanced fluorescence signal in nonlinear microscopy through supplementary fiber-optic light collection. Opt. Express 17, 6421-6435. doi: 10.1364/OE.17.006421
-
(2009)
Opt. Express
, vol.17
, pp. 6421-6435
-
-
Engelbrecht, C.J.1
Gobel, W.2
Helmchen, F.3
-
18
-
-
79955723992
-
Dissecting functional connectivity of neuronal microcircuits: Experimental and theoretical insights
-
doi: 10.1016/j.tins.2011.02.007
-
Feldt, S., Bonifazi, P., and Cossart, R. (2011). Dissecting functional connectivity of neuronal microcircuits: experimental and theoretical insights. Tr e n d s Ne u r o s c i. 34, 225-236. doi: 10.1016/j.tins.2011.02.007
-
(2011)
Tr E N D S Ne U R O S C I
, vol.34
, pp. 225-236
-
-
Feldt, S.1
Bonifazi, P.2
Cossart, R.3
-
19
-
-
84888240166
-
Monitoring synaptic and neuronal activity in 3D with synthetic and genetic indicators using a compact acousto-optic lens two-photon microscope
-
doi: 10.1016/j.jneumeth.2013. 10.021
-
Fernández-Alfonso, T., Nadella, K. M., Iacaruso, M. F., Pichler, B., Roš, H., Kirkby, P. A., et al. (2013). Monitoring synaptic and neuronal activity in 3D with synthetic and genetic indicators using a compact acousto-optic lens two-photon microscope. J. Neurosci. Methods 222C, 69-81. doi: 10.1016/j.jneumeth.2013. 10.021
-
(2013)
J. Neurosci. Methods
, vol.222 C
, pp. 69-81
-
-
Fernández-Alfonso, T.1
Nadella, K.M.2
Iacaruso, M.F.3
Pichler, B.4
Roš, H.5
Kirkby, P.A.6
-
20
-
-
79952770963
-
Dense inhibitory connectivity in neocortex
-
doi: 10.1016/j.neuron.2011.02.025
-
Fino, E., and Yuste, R. (2011). Dense inhibitory connectivity in neocortex. Neuron 69, 1188-1203. doi: 10.1016/j.neuron.2011.02.025
-
(2011)
Neuron
, vol.69
, pp. 1188-1203
-
-
Fino, E.1
Yuste, R.2
-
21
-
-
33751117722
-
Optical monitoring of brain function in vivo: From neurons to networks
-
doi: 10.1007/s00424-006-0150-x
-
Garaschuk, O., Milos, R. I., Grienberger, C., Marandi, N., Adelsberger, H., and Konnerth, A. (2006). Optical monitoring of brain function in vivo: from neurons to networks. Pflugers Arch. 453, 385-396. doi: 10.1007/s00424-006-0150-x
-
(2006)
Pflugers Arch
, vol.453
, pp. 385-396
-
-
Garaschuk, O.1
Milos, R.I.2
Grienberger, C.3
Marandi, N.4
Adelsberger, H.5
Konnerth, A.6
-
22
-
-
84880767917
-
Successful reconstruction of a physiological circuit with known connectivity from spiking activity alone
-
doi: 10.1371/journal.pcbi.1003138
-
Gerhard, F., Kispersky, T., Gutierrez, G. J., Marder, E., Kramer, M., and Eden, U. (2013). Successful reconstruction of a physiological circuit with known connectivity from spiking activity alone. PLoS Comput. Biol. 9:e1003138. doi: 10.1371/journal.pcbi.1003138
-
(2013)
PLoS Comput. Biol
, vol.9
-
-
Gerhard, F.1
Kispersky, T.2
Gutierrez, G.J.3
Marder, E.4
Kramer, M.5
Eden, U.6
-
23
-
-
84934932648
-
Extraction of network topology from multi-electrode recordings: Is there a small-world effect?
-
doi: 10.3389/fncom.2011.00004
-
Gerhard, F., Pipa, G., Lima, B., Neuenschwander, S., and Gerstner, W. (2011). Extraction of network topology from multi-electrode recordings: is there a small-world effect? Front. Comput. Neurosci. 5:4. doi: 10.3389/fncom.2011.00004
-
(2011)
Front. Comput. Neurosci
, vol.5
, pp. 4
-
-
Gerhard, F.1
Pipa, G.2
Lima, B.3
Neuenschwander, S.4
Gerstner, W.5
-
24
-
-
37149048159
-
In vivo calcium imaging of neural network function
-
doi: 10.1152/physiol.00032.2007
-
Göbel, W., and Helmchen, F. (2007). In vivo calcium imaging of neural network function. Physiology (Bethesda) 22, 358-365. doi: 10.1152/physiol.00032.2007
-
(2007)
Physiology (Bethesda)
, vol.22
, pp. 358-365
-
-
Göbel, W.1
Helmchen, F.2
-
25
-
-
46049110525
-
Population imaging of ongoing neuronal activity in the visual cortex of awake rats
-
doi: 10.1038/nn.2140
-
Greenberg, D. S., Houweling, A. R., and Kerr, J. N. (2008). Population imaging of ongoing neuronal activity in the visual cortex of awake rats. Nat. Neurosci. 11, 749-751. doi: 10.1038/nn.2140
-
(2008)
Nat. Neurosci
, vol.11
, pp. 749-751
-
-
Greenberg, D.S.1
Houweling, A.R.2
Kerr, J.N.3
-
26
-
-
70450203895
-
Optical probing of neuronal ensemble activity
-
doi: 10.1016/j.conb.2009.09.003
-
Grewe, B. F., and Helmchen, F. (2009). Optical probing of neuronal ensemble activity. Curr. Opin. Neurobiol. 19, 520-529. doi: 10.1016/j.conb.2009.09.003
-
(2009)
Curr. Opin. Neurobiol
, vol.19
, pp. 520-529
-
-
Grewe, B.F.1
Helmchen, F.2
-
27
-
-
77952238050
-
High-speed in vivo calcium imaging reveals neuronal network activity with near-millisecond precision
-
doi: 10.1038/nmeth.1453
-
Grewe, B. F., Langer, D., Kasper, H., Kampa, B. M., and Helmchen, F. (2010). High-speed in vivo calcium imaging reveals neuronal network activity with near-millisecond precision. Nat. Methods 7, 399-405. doi: 10.1038/nmeth.1453
-
(2010)
Nat. Methods
, vol.7
, pp. 399-405
-
-
Grewe, B.F.1
Langer, D.2
Kasper, H.3
Kampa, B.M.4
Helmchen, F.5
-
28
-
-
84858054760
-
Imaging calcium in neurons
-
doi: 10.1016/j.neuron.2012.02.011
-
Grienberger, C., and Konnerth, A. (2012). Imaging calcium in neurons. Neuron 73, 862-885. doi: 10.1016/j.neuron.2012.02.011
-
(2012)
Neuron
, vol.73
, pp. 862-885
-
-
Grienberger, C.1
Konnerth, A.2
-
29
-
-
24944442468
-
Effect of sampling on topology predictions of protein-protein interaction networks
-
doi: 10.1038/nbt1116
-
Han, J. D., Dupuy, D., Bertin, N., Cusick, M. E., and Vidal, M. (2005). Effect of sampling on topology predictions of protein-protein interaction networks. Nat. Biotechnol. 23, 839-844. doi: 10.1038/nbt1116
-
(2005)
Nat. Biotechnol
, vol.23
, pp. 839-844
-
-
Han, J.D.1
Dupuy, D.2
Bertin, N.3
Cusick, M.E.4
Vidal, M.5
-
30
-
-
84891520452
-
Calcium imaging
-
eds R. Brette and A. Destexhe (Cambridge: Cambridge University Press)
-
Helmchen, F. (2012). "Calcium imaging," in Handbook of Neural Activity Measurement, eds R. Brette and A. Destexhe (Cambridge: Cambridge University Press).
-
(2012)
Handbook of Neural Activity Measurement
-
-
Helmchen, F.1
-
31
-
-
0030087942
-
2+ signaling in dendrites of pyramidal neurons
-
doi: 10.1016/S0006-3495(96)79653-4
-
2+ signaling in dendrites of pyramidal neurons. Biophys. J. 70, 1069-1081. doi: 10.1016/S0006-3495(96)79653-4
-
(1996)
Biophys. J
, vol.70
, pp. 1069-1081
-
-
Helmchen, F.1
Imoto, K.2
Sakmann, B.3
-
32
-
-
79961222696
-
A single compartment model of calcium dynamics in dendrites and nerve terminals
-
eds F. Helmchen and A. Konnerth (New York, NY: Cold Spring Harbor Laboratory Press)
-
Helmchen, F., and Tank, D. W. (2011). "A single compartment model of calcium dynamics in dendrites and nerve terminals," in Imaging in Neuroscience: A Laboratory Manual, eds F. Helmchen and A. Konnerth (New York, NY: Cold Spring Harbor Laboratory Press).
-
(2011)
Imaging In Neuroscience: A Laboratory Manual
-
-
Helmchen, F.1
Tank, D.W.2
-
33
-
-
49049094473
-
Fluorescence changes of genetic calcium indicators and OGB-1 correlated with neural activity and calcium in vivo and in vitro
-
doi: 10.1523/JNEUROSCI.1038-08.2008
-
Hendel, T., Mank, M., Schnell, B., Griesbeck, O., Borst, A., and Reiff, D. F. (2008). Fluorescence changes of genetic calcium indicators and OGB-1 correlated with neural activity and calcium in vivo and in vitro. J. Neurosci. 28, 7399-7411. doi: 10.1523/JNEUROSCI.1038-08.2008
-
(2008)
J. Neurosci
, vol.28
, pp. 7399-7411
-
-
Hendel, T.1
Mank, M.2
Schnell, B.3
Griesbeck, O.4
Borst, A.5
Reiff, D.F.6
-
34
-
-
79960836272
-
Differential connectivity and response dynamics of excitatory and inhibitory neurons in visual cortex
-
doi: 10.1038/nn.2876
-
Hofer, S. B., Ko, H., Pichler, B., Vogelstein, J., Ros, H., Zeng, H., et al. (2011). Differential connectivity and response dynamics of excitatory and inhibitory neurons in visual cortex. Nat. Neurosci. 14, 1045-1052. doi: 10.1038/nn.2876
-
(2011)
Nat. Neurosci
, vol.14
, pp. 1045-1052
-
-
Hofer, S.B.1
Ko, H.2
Pichler, B.3
Vogelstein, J.4
Ros, H.5
Zeng, H.6
-
35
-
-
77956340960
-
Spontaneous network activity visualized by ultrasensitive Ca(2+) indicators, yellow Cameleon-Nano
-
doi: 10.1038/nmeth.1488
-
Horikawa, K., Yamada, Y., Matsuda, T., Kobayashi, K., Hashimoto, M., Matsu-Ura, T., et al. (2010). Spontaneous network activity visualized by ultrasensitive Ca(2+) indicators, yellow Cameleon-Nano. Nat. Methods 7, 729-732. doi: 10.1038/nmeth.1488
-
(2010)
Nat. Methods
, vol.7
, pp. 729-732
-
-
Horikawa, K.1
Yamada, Y.2
Matsuda, T.3
Kobayashi, K.4
Hashimoto, M.5
Matsu-Ura, T.6
-
36
-
-
80455129742
-
Measuring neuronal population activity using 3D laser scanning
-
doi: 10.1101/pdb.prot066597
-
Kampa, B. M., Gobel, W., and Helmchen, F. (2011). Measuring neuronal population activity using 3D laser scanning. Cold Spring Harb. Protoc. 2011, 1340-1349. doi: 10.1101/pdb.prot066597
-
(2011)
Cold Spring Harb. Protoc
, vol.2011
, pp. 1340-1349
-
-
Kampa, B.M.1
Gobel, W.2
Helmchen, F.3
-
37
-
-
84856447940
-
Fast two-photon in vivo imaging with three-dimensional random-access scanning in large tissue volumes
-
doi: 10.1038/nmeth.1851
-
Katona, G., Szalay, G., Maak, P., Kaszas, A., Veress, M., Hillier, D., et al. (2012). Fast two-photon in vivo imaging with three-dimensional random-access scanning in large tissue volumes. Nat. Methods 9, 201-208. doi: 10.1038/nmeth.1851
-
(2012)
Nat. Methods
, vol.9
, pp. 201-208
-
-
Katona, G.1
Szalay, G.2
Maak, P.3
Kaszas, A.4
Veress, M.5
Hillier, D.6
-
38
-
-
77956336542
-
Broadly tuned response properties of diverse inhibitory neuron subtypes in mouse visual cortex
-
doi: 10.1016/j.neuron.2010.08.002
-
Kerlin, A. M., Andermann, M. L., Berezovskii, V. K., and Reid, R. C. (2010). Broadly tuned response properties of diverse inhibitory neuron subtypes in mouse visual cortex. Neuron 67, 858-871. doi: 10.1016/j.neuron.2010.08.002
-
(2010)
Neuron
, vol.67
, pp. 858-871
-
-
Kerlin, A.M.1
Andermann, M.L.2
Berezovskii, V.K.3
Reid, R.C.4
-
39
-
-
36849035456
-
Spatial organization of neuronal population responses in layer 2/3 of rat barrel cortex
-
doi: 10.1523/JNEUROSCI.2210-07.2007
-
Kerr, J. N., De Kock, C. P., Greenberg, D. S., Bruno, R. M., Sakmann, B., and Helmchen, F. (2007). Spatial organization of neuronal population responses in layer 2/3 of rat barrel cortex. J. Neurosci. 27, 13316-13328. doi: 10.1523/JNEUROSCI.2210-07.2007
-
(2007)
J. Neurosci
, vol.27
, pp. 13316-13328
-
-
Kerr, J.N.1
de Kock, C.P.2
Greenberg, D.S.3
Bruno, R.M.4
Sakmann, B.5
Helmchen, F.6
-
40
-
-
25444487761
-
Imaging input and output of neocortical networks in vivo
-
doi: 10.1073/pnas.0506029102
-
Kerr, J. N., Greenberg, D., and Helmchen, F. (2005). Imaging input and output of neocortical networks in vivo. Proc. Natl. Acad. Sci. U.S.A. 102, 14063-14068. doi: 10.1073/pnas.0506029102
-
(2005)
Proc. Natl. Acad. Sci. U.S.A
, vol.102
, pp. 14063-14068
-
-
Kerr, J.N.1
Greenberg, D.2
Helmchen, F.3
-
41
-
-
84866536647
-
Genetically encoded optical indicators for the analysis of neuronal circuits
-
doi: 10.1038/nrn3293
-
Knopfel, T. (2012). Genetically encoded optical indicators for the analysis of neuronal circuits. Nat. Rev. Neurosci. 13, 687-700. doi: 10.1038/nrn3293
-
(2012)
Nat. Rev. Neurosci
, vol.13
, pp. 687-700
-
-
Knopfel, T.1
-
42
-
-
79955612100
-
Functional specificity of local synaptic connections in neocortical networks
-
doi: 10.1038/nature09880
-
Ko, H., Hofer, S. B., Pichler, B., Buchanan, K. A., Sjostrom, P. J., and Mrsic-Flogel, T. D. (2011). Functional specificity of local synaptic connections in neocortical networks. Nature 473, 87-91. doi: 10.1038/nature09880
-
(2011)
Nature
, vol.473
, pp. 87-91
-
-
Ko, H.1
Hofer, S.B.2
Pichler, B.3
Buchanan, K.A.4
Sjostrom, P.J.5
Mrsic-Flogel, T.D.6
-
43
-
-
84856709185
-
Post hoc immunostaining of GABAergic neuronal subtypes following in vivo two-photon calcium imaging in mouse neocortex
-
doi: 10.1007/s00424-011-1048-9
-
Langer, D., and Helmchen, F. (2012). Post hoc immunostaining of GABAergic neuronal subtypes following in vivo two-photon calcium imaging in mouse neocortex. Pflugers Arch. 463, 339-354. doi: 10.1007/s00424-011-1048-9
-
(2012)
Pflugers Arch
, vol.463
, pp. 339-354
-
-
Langer, D.1
Helmchen, F.2
-
44
-
-
46249127575
-
Two-photon imaging of spatially extended neuronal network dynamics with high temporal resolution
-
doi: 10.1016/j.jneumeth.2008.04.024
-
Lillis, K. P., Eng, A., White, J. A., and Mertz, J. (2008). Two-photon imaging of spatially extended neuronal network dynamics with high temporal resolution. J. Neurosci. Methods 172, 178-184. doi: 10.1016/j.jneumeth.2008.04.024
-
(2008)
J. Neurosci. Methods
, vol.172
, pp. 178-184
-
-
Lillis, K.P.1
Eng, A.2
White, J.A.3
Mertz, J.4
-
45
-
-
84857690012
-
Genetically encoded neural activity indicators
-
doi: 10.1016/j.conb.2011.10.024
-
Looger, L. L., and Griesbeck, O. (2012). Genetically encoded neural activity indicators. Curr. Opin. Neurobiol. 22, 18-23. doi: 10.1016/j.conb.2011.10.024
-
(2012)
Curr. Opin. Neurobiol
, vol.22
, pp. 18-23
-
-
Looger, L.L.1
Griesbeck, O.2
-
46
-
-
79961085495
-
Two-photon imaging and analysis of neural network dynamics
-
doi: 10.1088/0034-4885/74/8/086602
-
Lütcke, H., and Helmchen, F. (2011). Two-photon imaging and analysis of neural network dynamics. Rep. Prog. Phys. 74. doi: 10.1088/0034-4885/74/8/086602
-
(2011)
Rep. Prog. Phys
, pp. 74
-
-
Lütcke, H.1
Helmchen, F.2
-
47
-
-
84879783265
-
Steady or changing? Long-term monitoring of neuronal population activity
-
doi: 10.1016/j.tins.2013.03.008
-
Lütcke, H., Margolis, D. J., and Helmchen, F. (2013). Steady or changing? Long-term monitoring of neuronal population activity. Tr e n d s Ne u r o s c i. 36, 375-384. doi: 10.1016/j.tins.2013.03.008
-
(2013)
Tr E N D S Ne U R O S C I
, vol.36
, pp. 375-384
-
-
Lütcke, H.1
Margolis, D.J.2
Helmchen, F.3
-
48
-
-
77952237297
-
Optical recording of neuronal activity with a genetically-encoded calcium indicator in anesthetized and freely moving mice
-
doi: 10.3389/fncir.2010.00009
-
Lütcke, H., Murayama, M., Hahn, T., Margolis, D. J., Astori, S., Zum Alten Borgloh, S. M., et al. (2010). Optical recording of neuronal activity with a genetically-encoded calcium indicator in anesthetized and freely moving mice. Front. Neural Circuits 4:9. doi: 10.3389/fncir.2010.00009
-
(2010)
Front. Neural Circuits
, vol.4
, pp. 9
-
-
Lütcke, H.1
Murayama, M.2
Hahn, T.3
Margolis, D.J.4
Astori, S.5
Zum Alten, B.S.M.6
-
49
-
-
84868210837
-
Reorganization of cortical population activity imaged throughout long-term sensory deprivation
-
doi: 10.1038/nn.3240
-
Margolis, D. J., Lütcke, H., Schulz, K., Haiss, F., Weber, B., Kügler, S., et al. (2012). Reorganization of cortical population activity imaged throughout long-term sensory deprivation. Nat. Neurosci. 15, 1539-1546. doi: 10.1038/nn.3240
-
(2012)
Nat. Neurosci
, vol.15
, pp. 1539-1546
-
-
Margolis, D.J.1
Lütcke, H.2
Schulz, K.3
Haiss, F.4
Weber, B.5
Kügler, S.6
-
50
-
-
84858320460
-
Parameter extraction and classification of three cortical neuron types reveals two distinct adaptation mechanisms
-
doi: 10.1152/jn.00408.2011
-
Mensi, S., Naud, R., Pozzorini, C., Avermann, M., Petersen, C. C., and Gerstner, W. (2012). Parameter extraction and classification of three cortical neuron types reveals two distinct adaptation mechanisms. J. Neurophysiol. 107, 1756-1775. doi: 10.1152/jn.00408.2011
-
(2012)
J. Neurophysiol
, vol.107
, pp. 1756-1775
-
-
Mensi, S.1
Naud, R.2
Pozzorini, C.3
Avermann, M.4
Petersen, C.C.5
Gerstner, W.6
-
51
-
-
84863861279
-
A bayesian approach for inferring neuronal connectivity from calcium fluorescent imaging data
-
doi: 10.1214/09-AOAS303
-
Mishchenko, Y., Vogelstein, J. T., and Paninski, L. (2011). A bayesian approach for inferring neuronal connectivity from calcium fluorescent imaging data. Ann. Appl. Stat. 5, 1229-1261. doi: 10.1214/09-AOAS303
-
(2011)
Ann. Appl. Stat
, vol.5
, pp. 1229-1261
-
-
Mishchenko, Y.1
Vogelstein, J.T.2
Paninski, L.3
-
52
-
-
84990671447
-
A critical-point for random graphs with a given degree sequence
-
doi: 10.1002/rsa.3240060204
-
Molloy, M., and Reed, B. (1995). A critical-point for random graphs with a given degree sequence. Random Struct. Algor. 6, 161-179. doi: 10.1002/rsa.3240060204
-
(1995)
Random Struct. Algor
, vol.6
, pp. 161-179
-
-
Molloy, M.1
Reed, B.2
-
53
-
-
35748932679
-
Two-photon photo-stimulation and imaging of neural circuits
-
doi: 10.1038/nmeth1105
-
Nikolenko, V., Poskanzer, K. E., and Yuste, R. (2007). Two-photon photo-stimulation and imaging of neural circuits. Nat. Methods 4, 943-950. doi: 10.1038/nmeth1105
-
(2007)
Nat. Methods
, vol.4
, pp. 943-950
-
-
Nikolenko, V.1
Poskanzer, K.E.2
Yuste, R.3
-
54
-
-
84890878449
-
SLM microscopy: Scanless two-photon imaging and photostimulation with spatial light modulators
-
doi: 10.3389/neuro.04.005.2008
-
Nikolenko, V., Watson, B. O., Araya, R., Woodruff, A., Peterka, D. S., and Yuste, R. (2008). SLM microscopy: scanless two-photon imaging and photostimulation with spatial light modulators. Front. Neural Circuits 2:5. doi: 10.3389/neuro.04.005.2008
-
(2008)
Front. Neural Circuits
, vol.2
, pp. 5
-
-
Nikolenko, V.1
Watson, B.O.2
Araya, R.3
Woodruff, A.4
Peterka, D.S.5
Yuste, R.6
-
55
-
-
0035888959
-
Two-photon microscopy in brain tissue: Parameters influencing the imaging depth
-
doi: 10.1016/S0165-0270(01)00438-1
-
Oheim, M., Beaurepaire, E., Chaigneau, E., Mertz, J., and Charpak, S. (2001). Two-photon microscopy in brain tissue: parameters influencing the imaging depth. J. Neurosci. Methods 111, 29-37. doi: 10.1016/S0165-0270(01)00438-1
-
(2001)
J. Neurosci. Methods
, vol.111
, pp. 29-37
-
-
Oheim, M.1
Beaurepaire, E.2
Chaigneau, E.3
Mertz, J.4
Charpak, S.5
-
56
-
-
14144249743
-
Functional imaging with cellular resolution reveals precise micro-architecture in visual cortex
-
doi: 10.1038/nature03274
-
Ohki, K., Chung, S., Ch'ng, Y., Kara, P., and Reid, R. (2005). Functional imaging with cellular resolution reveals precise micro-architecture in visual cortex. Nature 433, 597-603. doi: 10.1038/nature03274
-
(2005)
Nature
, vol.433
, pp. 597-603
-
-
Ohki, K.1
Chung, S.2
Ch'Ng, Y.3
Kara, P.4
Reid, R.5
-
57
-
-
33747825055
-
Highly ordered arrangement of single neurons in orientation pinwheels
-
doi: 10.1038/nature05019
-
Ohki, K., Chung, S., Kara, P., Hubener, M., Bonhoeffer, T., and Reid, R. C. (2006). Highly ordered arrangement of single neurons in orientation pinwheels. Nature 442, 925-928. doi: 10.1038/nature05019
-
(2006)
Nature
, vol.442
, pp. 925-928
-
-
Ohki, K.1
Chung, S.2
Kara, P.3
Hubener, M.4
Bonhoeffer, T.5
Reid, R.C.6
-
58
-
-
20844431921
-
How close are we to understanding v1?
-
doi: 10.1162/0899766054026639
-
Olshausen, B. A., and Field, D. J. (2005). How close are we to understanding v1? Neural Comput. 17, 1665-1699. doi: 10.1162/0899766054026639
-
(2005)
Neural Comput
, vol.17
, pp. 1665-1699
-
-
Olshausen, B.A.1
Field, D.J.2
-
59
-
-
84883165878
-
A finite rate of innovation algorithm for fast and accurate spike detection from two-photon calcium imaging
-
doi: 10.1088/1741-2560/10/4/046017
-
Onativia, J., Schultz, S. R., and Dragotti, P. L. (2013). A finite rate of innovation algorithm for fast and accurate spike detection from two-photon calcium imaging. J. Neural Eng. 10, 046017. doi: 10.1088/1741-2560/10/4/046017
-
(2013)
J. Neural Eng
, vol.10
, pp. 046017
-
-
Onativia, J.1
Schultz, S.R.2
Dragotti, P.L.3
-
60
-
-
84880800347
-
Mapping brain circuitry with a light microscope
-
doi: 10.1038/nmeth.2477
-
Osten, P., and Margrie, T. W. (2013). Mapping brain circuitry with a light microscope. Nat. Methods 10, 515-523. doi: 10.1038/nmeth.2477
-
(2013)
Nat. Methods
, vol.10
, pp. 515-523
-
-
Osten, P.1
Margrie, T.W.2
-
61
-
-
48049084351
-
Optical monitoring of neuronal activity at high frame rate with a digital random-access multiphoton (RAMP) microscope
-
doi: 10.1016/j.jneumeth.2008.06.015
-
Otsu, Y., Bormuth, V., Wong, J., Mathieu, B., Dugue, G. P., Feltz, A., et al. (2008). Optical monitoring of neuronal activity at high frame rate with a digital random-access multiphoton (RAMP) microscope. J. Neurosci. Methods 173, 259-270. doi: 10.1016/j.jneumeth.2008.06.015
-
(2008)
J. Neurosci. Methods
, vol.173
, pp. 259-270
-
-
Otsu, Y.1
Bormuth, V.2
Wong, J.3
Mathieu, B.4
Dugue, G.P.5
Feltz, A.6
-
62
-
-
80052422438
-
Dense, unspecific connectivity of neocorti-cal parvalbumin-positive interneurons: A canonical microcircuit for inhibition?
-
doi: 10.1523/JNEUROSCI.3131-11.2011
-
Packer, A. M., and Yuste, R. (2011). Dense, unspecific connectivity of neocorti-cal parvalbumin-positive interneurons: a canonical microcircuit for inhibition? J. Neurosci. 31, 13260-13271. doi: 10.1523/JNEUROSCI.3131-11.2011
-
(2011)
J. Neurosci
, vol.31
, pp. 13260-13271
-
-
Packer, A.M.1
Yuste, R.2
-
63
-
-
50049100348
-
Spatio-temporal correlations and visual signalling in a complete neuronal population
-
doi: 10.1038/nature07140
-
Pillow, J. W., Shlens, J., Paninski, L., Sher, A., Litke, A. M., Chichilnisky, E. J., et al. (2008). Spatio-temporal correlations and visual signalling in a complete neuronal population. Nature 454, 995-999. doi: 10.1038/nature07140
-
(2008)
Nature
, vol.454
, pp. 995-999
-
-
Pillow, J.W.1
Shlens, J.2
Paninski, L.3
Sher, A.4
Litke, A.M.5
Chichilnisky, E.J.6
-
64
-
-
7444222261
-
Monitoring neural activity and [Ca2+] with genetically encoded Ca2+ indicators
-
doi: 10.1523/JNEUROSCI.2854-04.2004
-
Pologruto, T. A., Yasuda, R., and Svoboda, K. (2004). Monitoring neural activity and [Ca2+] with genetically encoded Ca2+ indicators. J. Neurosci. 24, 9572-9579. doi: 10.1523/JNEUROSCI.2854-04.2004
-
(2004)
J. Neurosci
, vol.24
, pp. 9572-9579
-
-
Pologruto, T.A.1
Yasuda, R.2
Svoboda, K.3
-
65
-
-
84870840594
-
Two-photon optogenetic toolbox for fast inhibition, excitation and bistable modulation
-
doi: 10.1038/nmeth.2215
-
Prakash, R., Yizhar, O., Grewe, B., Ramakrishnan, C., Wang, N., Goshen, I., et al. (2012). Two-photon optogenetic toolbox for fast inhibition, excitation and bistable modulation. Nat. Methods 9, 1171-1179. doi: 10.1038/nmeth.2215
-
(2012)
Nat. Methods
, vol.9
, pp. 1171-1179
-
-
Prakash, R.1
Yizhar, O.2
Grewe, B.3
Ramakrishnan, C.4
Wang, N.5
Goshen, I.6
-
66
-
-
77957193034
-
Optical recording of neuronal spiking activity from unbiased populations of neurons with high spike detection efficiency and high temporal precision
-
doi: 10.1152/jn.00197.2010
-
Ranganathan, G. N., and Koester, H. J. (2010). Optical recording of neuronal spiking activity from unbiased populations of neurons with high spike detection efficiency and high temporal precision. J. Neurophysiol. 104, 1812-1824. doi: 10.1152/jn.00197.2010
-
(2010)
J. Neurophysiol
, vol.104
, pp. 1812-1824
-
-
Ranganathan, G.N.1
Koester, H.J.2
-
67
-
-
33645218765
-
Fast three-dimensional laser scanning scheme using acousto-optic deflectors
-
doi: 10.1117/1.2141504
-
Reddy, G. D., and Saggau, P. (2005). Fast three-dimensional laser scanning scheme using acousto-optic deflectors. J. Biomed. Opt. 10, 064038. doi: 10.1117/1.2141504
-
(2005)
J. Biomed. Opt
, vol.10
, pp. 064038
-
-
Reddy, G.D.1
Saggau, P.2
-
68
-
-
70349290620
-
Sparsification of neuronal activity in the visual cortex at eye-opening
-
doi: 10.1073/pnas.0907660106
-
Rochefort, N. L., Garaschuk, O., Milos, R. I., Narushima, M., Marandi, N., Pichler, B., et al. (2009). Sparsification of neuronal activity in the visual cortex at eye-opening. Proc. Natl. Acad. Sci. U.S.A. 106, 15049-15054. doi: 10.1073/pnas.0907660106
-
(2009)
Proc. Natl. Acad. Sci. U.S.A
, vol.106
, pp. 15049-15054
-
-
Rochefort, N.L.1
Garaschuk, O.2
Milos, R.I.3
Narushima, M.4
Marandi, N.5
Pichler, B.6
-
69
-
-
77649130525
-
Functional organization and population dynamics in the mouse primary auditory cortex
-
doi: 10.1038/nn.2484
-
Rothschild, G., Nelken, I., and Mizrahi, A. (2010). Functional organization and population dynamics in the mouse primary auditory cortex. Nat. Neurosci. 13, 353-360. doi: 10.1038/nn.2484
-
(2010)
Nat. Neurosci
, vol.13
, pp. 353-360
-
-
Rothschild, G.1
Nelken, I.2
Mizrahi, A.3
-
70
-
-
57349192073
-
Fast and accurate detection of action potentials from somatic calcium fluctuations
-
Sasaki, T., Takahashi, N., Matsuki, N., and Ikegaya, Y. (2008). Fast and accurate detection of action potentials from somatic calcium fluctuations. J. Neurophysiol. 100, 1668-1676. doi: 10.1152/jn.00084.2008
-
(2008)
J. Neurophysiol
, vol.100
, pp. 1668-1676
-
-
Sasaki, T.1
Takahashi, N.2
Matsuki, N.3
Ikegaya, Y.4
-
71
-
-
33847137384
-
Optical recording of action potentials and other discrete physiological events: A perspective from signal detection theory
-
doi: 10.1152/physiol.00036.2006
-
Sjulson, L., and Miesenbock, G. (2007). Optical recording of action potentials and other discrete physiological events: a perspective from signal detection theory. Physiology 22, 47-55. doi: 10.1152/physiol.00036.2006
-
(2007)
Physiology
, vol.22
, pp. 47-55
-
-
Sjulson, L.1
Miesenbock, G.2
-
72
-
-
0038605051
-
Estimating a state-space model from point process observations
-
doi: 10.1162/089976603765202622
-
Smith, A. C., and Brown, E. N. (2003). Estimating a state-space model from point process observations. Neural Comput. 15, 965-991. doi: 10.1162/089976603765202622
-
(2003)
Neural Comput
, vol.15
, pp. 965-991
-
-
Smith, A.C.1
Brown, E.N.2
-
73
-
-
18044383304
-
Highly nonrandom features of synaptic connectivity in local cortical circuits
-
doi: 10.1371/journal.pbio.0030068
-
Song, S., Sjostrom, P. J., Reigl, M., Nelson, S., and Chklovskii, D. B. (2005). Highly nonrandom features of synaptic connectivity in local cortical circuits. PLoS Biol. 3:e68. doi: 10.1371/journal.pbio.0030068
-
(2005)
PLoS Biol
, vol.3
-
-
Song, S.1
Sjostrom, P.J.2
Reigl, M.3
Nelson, S.4
Chklovskii, D.B.5
-
74
-
-
84866085888
-
Model-free reconstruction of excitatory neuronal connectivity from calcium imaging signals
-
doi: 10.1371/journal.pcbi.1002653
-
Stetter, O., Battaglia, D., Soriano, J., and Geisel, T. (2012). Model-free reconstruction of excitatory neuronal connectivity from calcium imaging signals. PLoS Comput. Biol. 8:e1002653. doi: 10.1371/journal.pcbi.1002653
-
(2012)
PLoS Comput. Biol
, vol.8
-
-
Stetter, O.1
Battaglia, D.2
Soriano, J.3
Geisel, T.4
-
75
-
-
15444372528
-
Subnets of scale-free networks are not scale-free: Sampling properties of networks
-
doi: 10.1073/pnas.0501179102
-
Stumpf, M. P., Wiuf, C., and May, R. M. (2005). Subnets of scale-free networks are not scale-free: sampling properties of networks. Proc. Natl. Acad. Sci. U.S.A. 102, 4221-4224. doi: 10.1073/pnas.0501179102
-
(2005)
Proc. Natl. Acad. Sci. U.S.A
, vol.102
, pp. 4221-4224
-
-
Stumpf, M.P.1
Wiuf, C.2
May, R.M.3
-
76
-
-
84891538874
-
Inferring neural population dynamics from multiple partial recordings of the same neural circuit
-
Turaga, S. C., Buesing, L., Packer, A. M., Dalgleish, M., Petit, N., Hausser, M., et al. (in press). Inferring neural population dynamics from multiple partial recordings of the same neural circuit. Adv. Neural Inf. Process. Syst.
-
Adv. Neural Inf. Process. Syst
-
-
Turaga, S.C.1
Buesing, L.2
Packer, A.M.3
Dalgleish, M.4
Petit, N.5
Hausser, M.6
-
77
-
-
84863868057
-
Modeling the impact of common noise inputs on the network activity of retinal ganglion cells
-
doi: 10.1007/s10827-011-0376-2
-
Vidne, M., Ahmadian, Y., Shlens, J., Pillow, J. W., Kulkarni, J., Litke, A. M., et al. (2012). Modeling the impact of common noise inputs on the network activity of retinal ganglion cells. J. Comput. Neurosci. 33, 97-121. doi: 10.1007/s10827-011-0376-2
-
(2012)
J. Comput. Neurosci
, vol.33
, pp. 97-121
-
-
Vidne, M.1
Ahmadian, Y.2
Shlens, J.3
Pillow, J.W.4
Kulkarni, J.5
Litke, A.M.6
-
78
-
-
23344446786
-
Neural network dynamics
-
doi: 10.1146/annurev.neuro.28.061604.135637
-
Vogels, T. P., Rajan, K., and Abbott, L. F. (2005). Neural network dynamics. Annu. Rev. Neurosci. 28, 357-376. doi: 10.1146/annurev.neuro.28.061604.135637
-
(2005)
Annu. Rev. Neurosci
, vol.28
, pp. 357-376
-
-
Vogels, T.P.1
Rajan, K.2
Abbott, L.F.3
-
79
-
-
78349254139
-
Fast nonnegative deconvolution for spike train inference from population calcium imaging
-
doi: 10.1016/j.bpj.2012.07.058
-
Vogelstein, J. T., Packer, A. M., Machado, T. A., Sippy, T., Babadi, B., Yuste, R., et al. (2010). Fast nonnegative deconvolution for spike train inference from population calcium imaging. J. Neurophysiol. 104, 3691-3704. doi: 10.1016/j.bpj.2012.07.058
-
(2010)
J. Neurophysiol
, vol.104
, pp. 3691-3704
-
-
Vogelstein, J.T.1
Packer, A.M.2
Machado, T.A.3
Sippy, T.4
Babadi, B.5
Yuste, R.6
-
80
-
-
68949128883
-
Spike inference from calcium imaging using sequential Monte Carlo methods
-
doi: 10.1016/j.bpj.2008.08.005
-
Vogelstein, J. T., Watson, B. O., Packer, A. M., Yuste, R., Jedynak, B., and Paninski, L. (2009). Spike inference from calcium imaging using sequential Monte Carlo methods. Biophys. J. 97, 636-655. doi: 10.1016/j.bpj.2008.08.005
-
(2009)
Biophys. J
, vol.97
, pp. 636-655
-
-
Vogelstein, J.T.1
Watson, B.O.2
Packer, A.M.3
Yuste, R.4
Jedynak, B.5
Paninski, L.6
-
81
-
-
84872139167
-
Photon shot noise limits on optical detection of neuronal spikes and estimation of spike timing
-
doi: 10.1152/jn.01073.2009
-
Wilt, B. A., Fitzgerald, J. E., and Schnitzer, M. J. (2013). Photon shot noise limits on optical detection of neuronal spikes and estimation of spike timing. Biophys. J. 104, 51-62.doi: 10.1152/jn.01073.2009
-
(2013)
Biophys. J
, vol.104
, pp. 51-62
-
-
Wilt, B.A.1
Fitzgerald, J.E.2
Schnitzer, M.J.3
-
82
-
-
77954761018
-
Sparse and powerful cortical spikes
-
doi: 10.1016/j.conb.2010.03.006
-
Wolfe, J., Houweling, A. R., and Brecht, M. (2010). Sparse and powerful cortical spikes. Curr. Opin. Neurobiol. 20, 306-312. doi: 10.1016/j.conb.2010.03.006
-
(2010)
Curr. Opin. Neurobiol
, vol.20
, pp. 306-312
-
-
Wolfe, J.1
Houweling, A.R.2
Brecht, M.3
-
83
-
-
33646059907
-
Reconstruction of firing rate changes across neuronal populations by temporally deconvolved Ca2+ imaging
-
doi: 10.1038/nmeth874
-
Yaksi, E., and Friedrich, R. W. (2006). Reconstruction of firing rate changes across neuronal populations by temporally deconvolved Ca2+ imaging. Nat. Methods 3, 377-383. doi: 10.1038/nmeth874
-
(2006)
Nat. Methods
, vol.3
, pp. 377-383
-
-
Yaksi, E.1
Friedrich, R.W.2
-
84
-
-
84888256106
-
Synaptic plasticity in neural networks needs homeostasis with a fast rate detector
-
doi: 10.1371/journal.pcbi.1003330
-
Zenke, F., Hennequin, G., and Gerstner, W. (2013). Synaptic plasticity in neural networks needs homeostasis with a fast rate detector. PLoS Comput. Biol. 9:e1003330. doi: 10.1371/journal.pcbi.1003330
-
(2013)
PLoS Comput. Biol
, vol.9
-
-
Zenke, F.1
Hennequin, G.2
Gerstner, W.3
|