-
1
-
-
84865708757
-
An expansive human regulatory lexicon encoded in transcription factor footprints
-
doi:10.1038/nature11212
-
Neph S et al. 2012 An expansive human regulatory lexicon encoded in transcription factor footprints. Nature 489, 83-90. (doi:10.1038/nature11212)
-
(2012)
Nature
, vol.489
, pp. 83-90
-
-
Neph, S.1
-
2
-
-
84865755978
-
The accessible chromatin landscape of the human genome
-
doi:10.1038/nature11232
-
Thurman RE et al. 2012 The accessible chromatin landscape of the human genome. Nature 489, 75-82. (doi:10.1038/nature11232)
-
(2012)
Nature
, vol.489
, pp. 75-82
-
-
Thurman, R.E.1
-
3
-
-
11144339384
-
Long-range control of gene expression: Emerging mechanisms and disruption in disease
-
doi:10.1086/426833
-
Kleinjan DA, van Heyningen V. 2005 Long-range control of gene expression: emerging mechanisms and disruption in disease. Am. J. Hum. Genet. 76, 8-32. (doi:10.1086/426833)
-
(2005)
Am. J. Hum. Genet
, vol.76
, pp. 8-32
-
-
Kleinjan, D.A.1
van Heyningen, V.2
-
4
-
-
84975795680
-
An integrated map of genetic variation from 1,092 human genomes
-
1000 Genomes Project Consortium, doi:10.1038/nature11632
-
1000 Genomes Project Consortium, Abecasis GR, Auton A, Brooks LD, DePristo MA, Durbin RM, Handsaker RE, Kang HM, Marth GT, McVean GA. 2012 An integrated map of genetic variation from 1,092 human genomes. Nature 491, 56-65. (doi:10.1038/nature11632)
-
(2012)
Nature
, vol.491
, pp. 56-65
-
-
Abecasis, G.R.1
Auton, A.2
Brooks, L.D.3
Depristo, M.A.4
Durbin, R.M.5
Handsaker, R.E.6
Kang, H.M.7
Marth, G.T.8
McVean, G.A.9
-
5
-
-
77954763156
-
Genome-wide allele-specific analysis: Insights into regulatory variation
-
doi:10.1038/nrg2815
-
Pastinen T. 2010 Genome-wide allele-specific analysis: insights into regulatory variation. Nat. Rev. Genet. 11, 533-538. (doi:10.1038/nrg2815)
-
(2010)
Nat. Rev. Genet
, vol.11
, pp. 533-538
-
-
Pastinen, T.1
-
6
-
-
46849098205
-
2008 Multiple loci with different cancer specificities within the 8q24 gene desert
-
UK Genetic Prostate Cancer Study Collaborators/British Association of Urological Surgeons' Section of Oncology; UK ProtecT Study Collaborators, doi:10.1093/jnci/djn190
-
Ghoussaini M et al.; UK Genetic Prostate Cancer Study Collaborators/British Association of Urological Surgeons' Section of Oncology; UK ProtecT Study Collaborators. 2008 Multiple loci with different cancer specificities within the 8q24 gene desert. J. Natl Cancer Inst. 100, 962-966. (doi:10.1093/jnci/djn190)
-
J. Natl Cancer Inst
, vol.100
, pp. 962-966
-
-
Ghoussaini, M.1
-
7
-
-
84873489136
-
Human disease-associated genetic variation impacts large intergenic noncoding RNA expression
-
doi:10.1371/journal.pgen.1003201
-
Kumar V et al. 2013 Human disease-associated genetic variation impacts large intergenic noncoding RNA expression. PLoS Genet. 9, e1003201. (doi:10.1371/journal.pgen.1003201)
-
(2013)
PLoS Genet
, vol.9
-
-
Kumar, V.1
-
8
-
-
84865761246
-
Modeling gene expression using chromatin features in various cellular contexts
-
doi:10.1186/gb-2012-13-9-r53
-
Dong X et al. 2012 Modeling gene expression using chromatin features in various cellular contexts. Genome Biol. 13, R53. (doi:10.1186/gb-2012-13-9-r53)
-
(2012)
Genome Biol
, vol.13
-
-
Dong, X.1
-
9
-
-
84869502241
-
ChIP-seq and beyond: New and improved methodologies to detect and characterize protein-DNA interactions
-
doi:10.1038/nrg3306
-
Furey TS. 2012 ChIP-seq and beyond: new and improved methodologies to detect and characterize protein-DNA interactions. Nat. Rev. Genet. 13, 840-852. (doi:10.1038/nrg3306)
-
(2012)
Nat. Rev. Genet
, vol.13
, pp. 840-852
-
-
Furey, T.S.1
-
10
-
-
84876007572
-
RFECS: A random-forest based algorithm for enhancer identification from chromatin state
-
doi:10.1371/journal. pcbi.1002968
-
Rajagopal N, Xie W, Li Y, Wagner U, Wang W, Stamatoyannopoulos J, Ernst J, Kellis M, Ren B. 2013 RFECS: a random-forest based algorithm for enhancer identification from chromatin state. PLoS Comput. Biol. 9, e1002968. (doi:10.1371/journal. pcbi.1002968)
-
(2013)
PLoS Comput. Biol
, vol.9
-
-
Rajagopal, N.1
Xie, W.2
Li, Y.3
Wagner, U.4
Wang, W.5
Stamatoyannopoulos, J.6
Ernst, J.7
Kellis, M.8
Ren, B.9
-
11
-
-
84877831606
-
Chromatin organization: Form to function
-
doi:10.1016/j.gde.2012.11.011
-
de Graaf CA, van Steensel B. 2012 Chromatin organization: form to function. Curr. Opin. Genet Dev. (doi:10.1016/j.gde.2012.11.011)
-
(2012)
Curr. Opin. Genet Dev
-
-
de Graaf, C.A.1
van Steensel, B.2
-
12
-
-
84875143934
-
Multiplexed chromosome conformation capture sequencing for rapid genomescale high-resolution detection of long-range chromatin interactions
-
doi:10.1038/nprot.2013.018
-
Stadhouders R et al. 2013 Multiplexed chromosome conformation capture sequencing for rapid genomescale high-resolution detection of long-range chromatin interactions. Nat. Protoc. 8, 509-524. (doi:10.1038/nprot.2013.018)
-
(2013)
Nat. Protoc
, vol.8
, pp. 509-524
-
-
Stadhouders, R.1
-
13
-
-
85046983762
-
Alterations to the remote control of Shh gene expression cause congenital abnormalities
-
doi:10.1098/rstb.2012.0357
-
Hill RE, Lettice LA. 2013 Alterations to the remote control of Shh gene expression cause congenital abnormalities. Phil. Trans. R. Soc. B 368, 20120357. (doi:10.1098/rstb.2012.0357)
-
(2013)
Phil. Trans. R. Soc. B
, vol.368
, pp. 20120357
-
-
Hill, R.E.1
Lettice, L.A.2
-
14
-
-
84891478098
-
Chromatin organization and global regulation of Hox gene clusters
-
doi:10.1098/rstb.2012.0367
-
Montavon T, Duboule D. 2013 Chromatin organization and global regulation of Hox gene clusters. Phil. Trans. R. Soc. B 368, 20120367. (doi:10.1098/rstb.2012.0367)
-
(2013)
Phil. Trans. R. Soc. B
, vol.368
, pp. 20120367
-
-
Montavon, T.1
Duboule, D.2
-
15
-
-
84877124067
-
High-resolution analysis of cis-acting regulatory networks at the a-globin locus
-
doi:10. 1098/rstb.2012.0361
-
Hughes JR et al. 2013 High-resolution analysis of cis-acting regulatory networks at the a-globin locus. Phil. Trans. R. Soc. B 368, 20120361. (doi:10. 1098/rstb.2012.0361)
-
(2013)
Phil. Trans. R. Soc. B
, vol.368
, pp. 20120361
-
-
Hughes, J.R.1
-
16
-
-
84891375981
-
Functional anatomy of distant-acting mammalian enhancers
-
doi:10.1098/ rstb.2012.0359
-
Dickel DE, Visel A, Pennacchio LA. 2013 Functional anatomy of distant-acting mammalian enhancers. Phil. Trans. R. Soc. B 368, 20120359. (doi:10.1098/ rstb.2012.0359)
-
(2013)
Phil. Trans. R. Soc. B
, vol.368
, pp. 20120359
-
-
Dickel, D.E.1
Visel, A.2
Pennacchio, L.A.3
-
17
-
-
84891393469
-
From remote enhancers to gene regulation: Charting the genome's regulatory landscapes
-
doi:10.1098/rstb.2012.0358
-
Symmons O, Spitz F. 2013 From remote enhancers to gene regulation: charting the genome's regulatory landscapes. Phil. Trans. R. Soc. B 368, 20120358. (doi:10.1098/rstb.2012.0358)
-
(2013)
Phil. Trans. R. Soc. B
, vol.368
, pp. 20120358
-
-
Symmons, O.1
Spitz, F.2
-
18
-
-
84891476248
-
CTCF: The protein, the binding partners, the binding sites and their chromatin loops
-
doi:10.1098/rstb.2012.0369
-
Holwerda SJB, de Laat W. 2013 CTCF: the protein, the binding partners, the binding sites and their chromatin loops. Phil. Trans. R. Soc. B 368, 20120369. (doi:10.1098/rstb.2012.0369)
-
(2013)
Phil. Trans. R. Soc. B
, vol.368
, pp. 20120369
-
-
Holwerda, S.J.B.1
de Laat, W.2
-
19
-
-
84891439321
-
Deciphering cis-regulatory control in inflammatory cells
-
doi:10.1098/rstb.2012.0370
-
Ghisletti S, Natoli G. 2013 Deciphering cis-regulatory control in inflammatory cells. Phil. Trans. R. Soc. B 368, 20120370. (doi:10.1098/rstb.2012.0370)
-
(2013)
Phil. Trans. R. Soc. B
, vol.368
, pp. 20120370
-
-
Ghisletti, S.1
Natoli, G.2
-
20
-
-
84891390867
-
Effects of gene regulatory reprogramming on gene expression in human and mouse developing hearts
-
doi:10.1098/rstb. 2012.0366
-
Hsu C-H, Ovcharenko I. 2013 Effects of gene regulatory reprogramming on gene expression in human and mouse developing hearts. Phil. Trans. R. Soc. B 368, 20120366. (doi:10.1098/rstb. 2012.0366)
-
(2013)
Phil. Trans. R. Soc. B
, vol.368
, pp. 20120366
-
-
Hsu, C.-H.1
Ovcharenko, I.2
-
21
-
-
84891453290
-
Human genetic variation within neural crest enhancers: Molecular and phenotypic implications
-
doi:10.1098/ rstb.2012.0360
-
Rada-Iglesias A, Prescott SL, Wysocka J. 2013 Human genetic variation within neural crest enhancers: molecular and phenotypic implications. Phil. Trans. R. Soc. B 368, 20120360. (doi:10.1098/ rstb.2012.0360)
-
(2013)
Phil. Trans. R. Soc. B
, vol.368
, pp. 20120360
-
-
Rada-Iglesias, A.1
Prescott, S.L.2
Wysocka, J.3
-
22
-
-
84891472019
-
Deconvoluting complex tissues for expression quantitative trait locus-based analyses
-
doi:10.1098/rstb. 2012.0363
-
Seo J-H, Li Q, Fatima A, Eklund A, Szallasi Z, Polyak K, Richardson AL, Freedman ML. 2013 Deconvoluting complex tissues for expression quantitative trait locus-based analyses. Phil. Trans. R. Soc. B 368, 20120363. (doi:10.1098/rstb. 2012.0363)
-
(2013)
Phil. Trans. R. Soc. B
, vol.368
, pp. 20120363
-
-
Seo, J.-H.1
Li, Q.2
Fatima, A.3
Eklund, A.4
Szallasi, Z.5
Polyak, K.6
Richardson, A.L.7
Freedman, M.L.8
-
23
-
-
84885639459
-
Expression quantitative trait loci: Present and future
-
doi:10.1098/rstb.2012.0362
-
Nica AC, Dermitzakis ET. 2013 Expression quantitative trait loci: present and future. Phil. Trans. R. Soc. B 368, 20120362. (doi:10.1098/rstb.2012.0362)
-
(2013)
Phil. Trans. R. Soc. B
, vol.368
, pp. 20120362
-
-
Nica, A.C.1
Dermitzakis, E.T.2
|