-
1
-
-
77954928774
-
Maintaining cell identity through global control of genomic organization
-
(doi:10.1016/j.immuni.2010. 07.006)
-
Natoli G. 2010 Maintaining cell identity through global control of genomic organization. Immunity 33, 12-24. (doi:10.1016/j.immuni.2010. 07.006)
-
(2010)
Immunity
, vol.33
, pp. 12-24
-
-
Natoli, G.1
-
2
-
-
80053501181
-
Regulation of nucleosome landscape and transcription factor targeting at tissue-specific enhancers by BRG1
-
(doi:10.1101/gr.121145.111)
-
Hu G et al. 2011 Regulation of nucleosome landscape and transcription factor targeting at tissue-specific enhancers by BRG1. Genome Res. 21, 1650-1658. (doi:10.1101/gr.121145.111)
-
(2011)
Genome Res
, vol.21
, pp. 1650-1658
-
-
Hu, G.1
-
3
-
-
77950262538
-
Nucleosome dynamics define transcriptional enhancers
-
(doi:10.1038/ ng.545)
-
He HH et al. 2010 Nucleosome dynamics define transcriptional enhancers. Nat. Genet. 42, 343-347. (doi:10.1038/ ng.545)
-
(2010)
Nat. Genet
, vol.42
, pp. 343-347
-
-
He, H.H.1
-
4
-
-
39749145198
-
Dynamic regulation of nucleosome positioning in the human genome
-
(doi:10.1016/j.cell.2008.02.022)
-
Schones DE, Cui K, Cuddapah S, Roh TY, Barski A, Wang Z, Wei G, Zhao K. 2008 Dynamic regulation of nucleosome positioning in the human genome. Cell 132, 887-898. (doi:10.1016/j.cell.2008.02.022)
-
(2008)
Cell
, vol.132
, pp. 887-898
-
-
Schones, D.E.1
Cui, K.2
Cuddapah, S.3
Roh, T.Y.4
Barski, A.5
Wang, Z.6
Wei, G.7
Zhao, K.8
-
5
-
-
80053539409
-
Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity
-
(doi:10.1101/gr.121541.111)
-
Song L et al. 2011 Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity. Genome Res. 21, 1757-1767. (doi:10.1101/gr.121541.111)
-
(2011)
Genome Res
, vol.21
, pp. 1757-1767
-
-
Song, L.1
-
6
-
-
33847334699
-
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
-
(doi:10.1038/ng1966)
-
Heintzman ND et al. 2007 Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome. Nat. Genet. 39, 311-318. (doi:10.1038/ng1966)
-
(2007)
Nat. Genet
, vol.39
, pp. 311-318
-
-
Heintzman, N.D.1
-
7
-
-
34249026300
-
Highresolution profiling of histone methylations in the human genome
-
(doi:10.1016/j. cell.2007.05.009)
-
Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, Wang Z, Wei G, Chepelev I, Zhao K. 2007 Highresolution profiling of histone methylations in the human genome. Cell 129, 823-837. (doi:10.1016/j. cell.2007.05.009)
-
(2007)
Cell
, vol.129
, pp. 823-837
-
-
Barski, A.1
Cuddapah, S.2
Cui, K.3
Roh, T.Y.4
Schones, D.E.5
Wang, Z.6
Wei, G.7
Chepelev, I.8
Zhao, K.9
-
8
-
-
70249088327
-
Genomic views of distant-acting enhancers
-
(doi:10.1038/nature08451)
-
Visel A, Rubin EM, Pennacchio LA. 2009 Genomic views of distant-acting enhancers. Nature 461, 199-205. (doi:10.1038/nature08451)
-
(2009)
Nature
, vol.461
, pp. 199-205
-
-
Visel, A.1
Rubin, E.M.2
Pennacchio, L.A.3
-
9
-
-
78650304236
-
Charting histone modifications and the functional organization of mammalian genomes
-
(doi:10.1038/nrg2905)
-
Zhou VW, Goren A, Bernstein BE. 2011 Charting histone modifications and the functional organization of mammalian genomes. Nat. Rev. Genet. 12, 7-18. (doi:10.1038/nrg2905)
-
(2011)
Nat. Rev. Genet
, vol.12
, pp. 7-18
-
-
Zhou, V.W.1
Goren, A.2
Bernstein, B.E.3
-
10
-
-
77949977555
-
Identification and characterization of enhancers controlling the inflammatory gene expression program in macrophages
-
(doi:10. 1016/j.immuni.2010.02.008)
-
Ghisletti S et al. 2010 Identification and characterization of enhancers controlling the inflammatory gene expression program in macrophages. Immunity 32, 317-328. (doi:10. 1016/j.immuni.2010.02.008)
-
(2010)
Immunity
, vol.32
, pp. 317-328
-
-
Ghisletti, S.1
-
11
-
-
60149091656
-
ChIP-seq accurately predicts tissue-specific activity of enhancers
-
(doi:10.1038/nature07730)
-
Visel A et al. 2009 ChIP-seq accurately predicts tissue-specific activity of enhancers. Nature 457, 854-858. (doi:10.1038/nature07730)
-
(2009)
Nature
, vol.457
, pp. 854-858
-
-
Visel, A.1
-
12
-
-
65549104157
-
Histone modifications at human enhancers reflect global cell-type-specific gene expression
-
(doi:10. 1038/nature07829)
-
Heintzman ND et al. 2009 Histone modifications at human enhancers reflect global cell-type-specific gene expression. Nature 459, 108-112. (doi:10. 1038/nature07829)
-
(2009)
Nature
, vol.459
, pp. 108-112
-
-
Heintzman, N.D.1
-
13
-
-
46249112085
-
Combinatorial patterns of histone acetylations and methylations in the human genome
-
(doi:10.1038/ng.154)
-
Wang Z et al. 2008 Combinatorial patterns of histone acetylations and methylations in the human genome. Nat. Genet. 40, 897-903. (doi:10.1038/ng.154)
-
(2008)
Nat. Genet
, vol.40
, pp. 897-903
-
-
Wang, Z.1
-
14
-
-
79955583542
-
Mapping and analysis of chromatin state dynamics in nine human cell types
-
(doi:10.1038/nature09906)
-
Ernst J et al. 2011 Mapping and analysis of chromatin state dynamics in nine human cell types. Nature 473, 43-49. (doi:10.1038/nature09906)
-
(2011)
Nature
, vol.473
, pp. 43-49
-
-
Ernst, J.1
-
15
-
-
84655164920
-
Large-scale discovery of enhancers from human heart tissue
-
(doi:10.1038/ng.1006)
-
May D et al. 2011 Large-scale discovery of enhancers from human heart tissue. Nat. Genet. 44, 89-93. (doi:10.1038/ng.1006)
-
(2011)
Nat Genet
, vol.44
, pp. 89-93
-
-
May, D.1
-
16
-
-
33846876333
-
Predicting tissue-specific enhancers in the human genome
-
(doi:10.1101/gr.5972507)
-
Pennacchio LA, Loots GG, Nobrega MA, Ovcharenko I. 2007 Predicting tissue-specific enhancers in the human genome. Genome Res. 17, 201-211. (doi:10.1101/gr.5972507)
-
(2007)
Genome Res
, vol.17
, pp. 201-211
-
-
Pennacchio, L.A.1
Loots, G.G.2
Nobrega, M.A.3
Ovcharenko, I.4
-
17
-
-
77956641239
-
ChIP-Seq identification of weakly conserved heart enhancers
-
(doi:10.1038/ng.650)
-
Blow MJ et al. 2010 ChIP-Seq identification of weakly conserved heart enhancers. Nat. Genet. 42, 806-810. (doi:10.1038/ng.650)
-
(2010)
Nat. Genet
, vol.42
, pp. 806-810
-
-
Blow, M.J.1
-
18
-
-
84455200582
-
Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells
-
(doi:10.1016/j.cell.2011.09.057)
-
Ram O et al. 2011 Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells. Cell 147, 1628-1639. (doi:10.1016/j.cell.2011.09.057)
-
(2011)
Cell
, vol.147
, pp. 1628-1639
-
-
Ram, O.1
-
19
-
-
79955027617
-
Co-occupancy by multiple cardiac transcription factors identifies transcriptional enhancers active in heart
-
(doi:10.1073/pnas. 1016959108)
-
He A, Kong SW, Ma Q, Pu WT. 2011 Co-occupancy by multiple cardiac transcription factors identifies transcriptional enhancers active in heart. Proc. Natl Acad. Sci. USA 108, 5632-5637. (doi:10.1073/pnas. 1016959108)
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 5632-5637
-
-
He, A.1
Kong, S.W.2
Ma, Q.3
Pu, W.T.4
-
20
-
-
79955883317
-
Genome-wide analysis of simultaneous GATA1/2, RUNX1, FLI1, and SCL binding in megakaryocytes identifies hematopoietic regulators
-
(doi:10.1016/j. devcel.2011.04.008)
-
Tijssen MR et al. 2011 Genome-wide analysis of simultaneous GATA1/2, RUNX1, FLI1, and SCL binding in megakaryocytes identifies hematopoietic regulators. Dev. Cell 20, 597-609. (doi:10.1016/j. devcel.2011.04.008)
-
(2011)
Dev Cell
, vol.20
, pp. 597-609
-
-
Tijssen, M.R.1
-
21
-
-
84856704764
-
A transcription factor collective defines cardiac cell fate and reflects lineage history
-
(doi:10.1016/j.cell.2012.01.030)
-
Junion G, Spivakov M, Girardot C, Braun M, Gustafson EH, Birney E, Furlong EE. 2012 A transcription factor collective defines cardiac cell fate and reflects lineage history. Cell 148, 473-486. (doi:10.1016/j.cell.2012.01.030)
-
(2012)
Cell
, vol.148
, pp. 473-486
-
-
Junion, G.1
Spivakov, M.2
Girardot, C.3
Braun, M.4
Gustafson, E.H.5
Birney, E.6
Furlong, E.E.7
-
22
-
-
79551655285
-
Functional and mechanistic diversity of distal transcription enhancers
-
(doi:10.1016/j.cell. 2011.01.024)
-
Bulger M, Groudine M. 2011 Functional and mechanistic diversity of distal transcription enhancers. Cell 144, 327-339. (doi:10.1016/j.cell. 2011.01.024)
-
(2011)
Cell
, vol.144
, pp. 327-339
-
-
Bulger, M.1
Groudine, M.2
-
23
-
-
0025769412
-
Primary response genes induced by growth factors and tumor promoters
-
(doi:10.1146/ annurev.bi.60.070191.001433)
-
Herschman HR. 1991 Primary response genes induced by growth factors and tumor promoters. Annu. Rev. Biochem. 60, 281-319. (doi:10.1146/ annurev.bi.60.070191.001433)
-
(1991)
Annu. Rev. Biochem
, vol.60
, pp. 281-319
-
-
Herschman, H.R.1
-
24
-
-
0037022296
-
Human macrophage activation programs induced by bacterial pathogens
-
(doi:10. 1073/pnas.022649799)
-
Nau GJ, Richmond JF, Schlesinger A, Jennings EG, Lander ES, Young RA. 2002 Human macrophage activation programs induced by bacterial pathogens. Proc. Natl Acad. Sci. USA 99, 1503-1508. (doi:10. 1073/pnas.022649799)
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 1503-1508
-
-
Nau, G.J.1
Richmond, J.F.2
Schlesinger, A.3
Jennings, E.G.4
Lander, E.S.5
Young, R.A.6
-
25
-
-
79959557189
-
Determinants of nucleosome organization in primary human cells
-
(doi:10.1038/nature10002)
-
Valouev A, Johnson SM, Boyd SD, Smith CL, Fire AZ, Sidow A. 2011 Determinants of nucleosome organization in primary human cells. Nature 474, 516-520. (doi:10.1038/nature10002)
-
(2011)
Nature
, vol.474
, pp. 516-520
-
-
Valouev, A.1
Johnson, S.M.2
Boyd, S.D.3
Smith, C.L.4
Fire, A.Z.5
Sidow, A.6
-
26
-
-
67649669255
-
A unifying model for the selective regulation of inducible transcription by CpG islands and nucleosome remodeling
-
(doi:10.1016/j.cell.2009. 04.020)
-
Ramirez-Carrozzi VR et al. 2009 A unifying model for the selective regulation of inducible transcription by CpG islands and nucleosome remodeling. Cell 138, 114-128. (doi:10.1016/j.cell.2009. 04.020)
-
(2009)
Cell
, vol.138
, pp. 114-128
-
-
Ramirez-Carrozzi, V.R.1
-
27
-
-
67649648237
-
Control of inducible gene expression by signal-dependent transcriptional elongation
-
(doi:10.1016/j.cell.2009.05.047)
-
Hargreaves DC, Horng T, Medzhitov R. 2009 Control of inducible gene expression by signal-dependent transcriptional elongation. Cell 138, 129-145. (doi:10.1016/j.cell.2009.05.047)
-
(2009)
Cell
, vol.138
, pp. 129-145
-
-
Hargreaves, D.C.1
Horng, T.2
Medzhitov, R.3
-
28
-
-
77954954652
-
Genome-wide analysis of ETSfamily DNA-binding in vitro and in vivo
-
(doi:10.1038/emboj.2010.106)
-
Wei GH et al. 2010 Genome-wide analysis of ETSfamily DNA-binding in vitro and in vivo. EMBO J. 29, 2147-2160. (doi:10.1038/emboj.2010.106)
-
(2010)
EMBO J
, vol.29
, pp. 2147-2160
-
-
Wei, G.H.1
-
29
-
-
0032146794
-
PU.1 induces myeloid lineage commitment in multipotent hematopoietic progenitors
-
(doi:10. 1101/gad.12.15.2403)
-
Nerlov C, Graf T. 1998 PU.1 induces myeloid lineage commitment in multipotent hematopoietic progenitors. Genes Dev. 12, 2403-2412. (doi:10. 1101/gad.12.15.2403)
-
(1998)
Genes Dev
, vol.12
, pp. 2403-2412
-
-
Nerlov, C.1
Graf, T.2
-
30
-
-
77952567987
-
Simple combinations of lineagedetermining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
-
(doi:10.1016/j.molcel.2010.05.004)
-
Heinz S et al. 2010 Simple combinations of lineagedetermining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol. Cell 38, 576-589. (doi:10.1016/j.molcel.2010.05.004)
-
(2010)
Mol Cell
, vol.38
, pp. 576-589
-
-
Heinz, S.1
-
31
-
-
78650210727
-
Bcl-6 and NF-kB cistromes mediate opposing regulation of the innate immune response
-
(doi:10.1101/gad.1998010)
-
Barish GD, Yu RT, Karunasiri M, Ocampo CB, Dixon J, Benner C, Dent AL, Tangirala RK, Evans RM. 2010 Bcl-6 and NF-kB cistromes mediate opposing regulation of the innate immune response. Genes Dev. 24, 2760-2765. (doi:10.1101/gad.1998010)
-
(2010)
Genes Dev
, vol.24
, pp. 2760-2765
-
-
Barish, G.D.1
Yu, R.T.2
Karunasiri, M.3
Ocampo, C.B.4
Dixon, J.5
Benner, C.6
Dent, A.L.7
Tangirala, R.K.8
Evans, R.M.9
-
32
-
-
84855286273
-
Mechanisms establishing TLR4-responsive activation states of inflammatory response genes
-
(doi:10.1371/journal.pgen.1002401)
-
Escoubet-Lozach L et al. 2011 Mechanisms establishing TLR4-responsive activation states of inflammatory response genes. PLoS Genet. 7, e1002401. (doi:10.1371/journal.pgen.1002401)
-
(2011)
PLoS Genet
, vol.7
-
-
Escoubet-Lozach, L.1
-
33
-
-
80455144479
-
Pioneer transcription factors: Establishing competence for gene expression
-
(doi:10. 1101/gad.176826.111)
-
Zaret KS, Carroll JS. 2011 Pioneer transcription factors: establishing competence for gene expression. Genes Dev. 25, 2227-2241. (doi:10. 1101/gad.176826.111)
-
(2011)
Genes Dev
, vol.25
, pp. 2227-2241
-
-
Zaret, K.S.1
Carroll, J.S.2
-
34
-
-
77957672080
-
Epigenetic priming of a pre-B cell-specific enhancer through binding of Sox2 and Foxd3 at the ESC stage
-
(doi:10.1016/ j.stem.2010.05.020)
-
Liber D, Domaschenz R, Holmqvist PH, Mazzarella L, Georgiou A, Leleu M, Fisher AG, Labosky PA, Dillon N. 2010 Epigenetic priming of a pre-B cell-specific enhancer through binding of Sox2 and Foxd3 at the ESC stage. Cell Stem Cell 7, 114-126. (doi:10.1016/ j.stem.2010.05.020)
-
(2010)
Cell Stem Cell
, vol.7
, pp. 114-126
-
-
Liber, D.1
Domaschenz, R.2
Holmqvist, P.H.3
Mazzarella, L.4
Georgiou, A.5
Leleu, M.6
Fisher, A.G.7
Labosky, P.A.8
Dillon, N.9
-
35
-
-
84859582058
-
Genome-wide protein-DNA binding dynamics suggest a molecular clutch for transcription factor function
-
(doi:10.1038/nature10985)
-
Lickwar CR, Mueller F, Hanlon SE, McNally JG, Lieb JD. 2012 Genome-wide protein-DNA binding dynamics suggest a molecular clutch for transcription factor function. Nature 484, 251-255. (doi:10.1038/nature10985)
-
(2012)
Nature
, vol.484
, pp. 251-255
-
-
Lickwar, C.R.1
Mueller, F.2
Hanlon, S.E.3
McNally, J.G.4
Lieb, J.D.5
-
36
-
-
84866303839
-
A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals
-
(doi:10.1016/j.molcel.2012.07.030)
-
Garber M et al. 2012 A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals. Mol. Cell 47, 810-822. (doi:10.1016/j.molcel.2012.07.030)
-
(2012)
Mol. Cell
, vol.47
, pp. 810-822
-
-
Garber, M.1
-
37
-
-
79959198166
-
Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA
-
(doi:10.1038/ nature10006)
-
Wang D et al. 2011 Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA. Nature 474, 390-394. (doi:10.1038/ nature10006)
-
(2011)
Nature
, vol.474
, pp. 390-394
-
-
Wang, D.1
-
38
-
-
78651250284
-
FOXA1 is a key determinant of estrogen receptor function and endocrine response
-
(doi:10.1038/ng.730)
-
Hurtado A, Holmes KA, Ross-Innes CS, Schmidt D, Carroll JS. 2011 FOXA1 is a key determinant of estrogen receptor function and endocrine response. Nat. Genet. 43, 27-33. (doi:10.1038/ng.730)
-
(2011)
Nat. Genet
, vol.43
, pp. 27-33
-
-
Hurtado, A.1
Holmes, K.A.2
Ross-Innes, C.S.3
Schmidt, D.4
Carroll, J.S.5
-
39
-
-
79960072084
-
AP-2g regulates oestrogen receptor-mediated long-range chromatin interaction and gene transcription
-
(doi:10.1038/emboj.2011.151)
-
Tan SK, Lin ZH, Chang CW, Varang V, Chng KR, Pan YF, Yong EL, Sung WK, Cheung E. 2011 AP-2g regulates oestrogen receptor-mediated long-range chromatin interaction and gene transcription. Embo J. 30, 2569-2581. (doi:10.1038/emboj.2011.151)
-
(2011)
Embo J
, vol.30
, pp. 2569-2581
-
-
Tan, S.K.1
Lin, Z.H.2
Chang, C.W.3
Varang, V.4
Chng, K.R.5
Pan, Y.F.6
Yong, E.L.7
Sung, W.K.8
Cheung, E.9
-
40
-
-
79959813762
-
GATA4 regulates estrogen receptor-alpha-mediated osteoblast transcription
-
(doi:10.1210/me.2010-0463)
-
Miranda-Carboni GA, Guemes M, Bailey S, Anaya E, Corselli M, Peault B, Krum SA. 2011 GATA4 regulates estrogen receptor-alpha-mediated osteoblast transcription. Mol. Endocrinol. 25, 1126-1136. (doi:10.1210/me.2010-0463)
-
(2011)
Mol. Endocrinol
, vol.25
, pp. 1126-1136
-
-
Miranda-Carboni, G.A.1
Guemes, M.2
Bailey, S.3
Anaya, E.4
Corselli, M.5
Peault, B.6
Krum, S.A.7
-
41
-
-
79959911826
-
Transcription factor AP1 potentiates chromatin accessibility and glucocorticoid receptor binding
-
(doi:10.1016/j.molcel.2011.06.016)
-
Biddie SC et al. 2011 Transcription factor AP1 potentiates chromatin accessibility and glucocorticoid receptor binding. Mol. Cell 43, 145-155. (doi:10.1016/j.molcel.2011.06.016)
-
(2011)
Mol. Cell
, vol.43
, pp. 145-155
-
-
Biddie, S.C.1
-
42
-
-
80155137594
-
Master transcription factors determine cell-type-specific responses to TGF-b signaling
-
(doi:10.1016/j.cell. 2011.08.050)
-
Mullen AC et al. 2011 Master transcription factors determine cell-type-specific responses to TGF-b signaling. Cell 147, 565-576. (doi:10.1016/j.cell. 2011.08.050)
-
(2011)
Cell
, vol.147
, pp. 565-576
-
-
Mullen, A.C.1
-
43
-
-
78650758676
-
Histone H3K27ac separates active from poised enhancers and predicts developmental state
-
(doi:10.1073/pnas.1016071107)
-
Creyghton MP et al. 2010 Histone H3K27ac separates active from poised enhancers and predicts developmental state. Proc. Natl Acad. Sci. USA 107, 21931-21936. (doi:10.1073/pnas.1016071107)
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 21931-21936
-
-
Creyghton, M.P.1
-
44
-
-
79951516056
-
A unique chromatin signature uncovers early developmental enhancers in humans
-
(doi:10.1038/ nature09692)
-
Rada-Iglesias A, Bajpai R, Swigut T, Brugmann SA, Flynn RA, Wysocka J. 2011 A unique chromatin signature uncovers early developmental enhancers in humans. Nature 470, 279-283. (doi:10.1038/ nature09692)
-
(2011)
Nature
, vol.470
, pp. 279-283
-
-
Rada-Iglesias, A.1
Bajpai, R.2
Swigut, T.3
Brugmann, S.A.4
Flynn, R.A.5
Wysocka, J.6
-
45
-
-
58049191558
-
Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation
-
(doi:10. 1016/j.stem.2008.11.011)
-
Cui K, Zang C, Roh TY, Schones DE, Childs RW, Peng W, Zhao K. 2009 Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation. Cell Stem Cell 4, 80-93. (doi:10. 1016/j.stem.2008.11.011)
-
(2009)
Cell Stem Cell
, vol.4
, pp. 80-93
-
-
Cui, K.1
Zang, C.2
Roh, T.Y.3
Schones, D.E.4
Childs, R.W.5
Peng, W.6
Zhao, K.7
-
46
-
-
80051564877
-
Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions
-
(doi:10.1101/gr.122382.111)
-
Zentner GE, Tesar PJ, Scacheri PC. 2011 Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions. Genome Res. 21, 1273-1283. (doi:10.1101/gr.122382.111)
-
(2011)
Genome Res
, vol.21
, pp. 1273-1283
-
-
Zentner, G.E.1
Tesar, P.J.2
Scacheri, P.C.3
-
47
-
-
80053131310
-
Multilineage priming of enhancer repertoires precedes commitment to the B and myeloid cell lineages in hematopoietic progenitors
-
(doi:10.1016/j. immuni.2011.06.013)
-
Mercer EM et al. 2011 Multilineage priming of enhancer repertoires precedes commitment to the B and myeloid cell lineages in hematopoietic progenitors. Immunity 35, 413-425. (doi:10.1016/j. immuni.2011.06.013)
-
(2011)
Immunity
, vol.35
, pp. 413-425
-
-
Mercer, E.M.1
-
48
-
-
84867652835
-
Requirement for the histone deacetylase Hdac3 for the inflammatory gene expression program in macrophages
-
(doi:10.1073/ pnas.1121131109)
-
Chen X et al. 2012 Requirement for the histone deacetylase Hdac3 for the inflammatory gene expression program in macrophages. Proc. Natl Acad. Sci. USA 109, E2865-E2874. (doi:10.1073/ pnas.1121131109)
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
-
-
Chen, X.1
-
49
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
Project Consortium et al, (doi:10. 1038/nature11247)
-
Project Consortium et al. 2012 An integrated encyclopedia of DNA elements in the human genome. ENCODE. Nature 489, 57-74. (doi:10. 1038/nature11247)
-
(2012)
ENCODE. Nature
, vol.489
, pp. 57-74
-
-
-
50
-
-
84865755978
-
The accessible chromatin landscape of the human genome
-
(doi:10.1038/ nature11232)
-
Thurman RE et al. 2012 The accessible chromatin landscape of the human genome. Nature 489, 75-82. (doi:10.1038/ nature11232)
-
(2012)
Nature
, vol.489
, pp. 75-82
-
-
Thurman, R.E.1
-
51
-
-
84865708757
-
An expansive human regulatory lexicon encoded in transcription factor footprints
-
(doi:10.1038/nature11212)
-
Neph S et al. 2012 An expansive human regulatory lexicon encoded in transcription factor footprints. Nature 489, 83-90. (doi:10.1038/nature11212)
-
(2012)
Nature
, vol.489
, pp. 83-90
-
-
Neph, S.1
-
52
-
-
84865739425
-
Architecture of the human regulatory network derived from ENCODE data
-
(doi:10.1038/nature11245)
-
Gerstein MB et al. 2012 Architecture of the human regulatory network derived from ENCODE data. Nature 489, 91-100. (doi:10.1038/nature11245)
-
(2012)
Nature
, vol.489
, pp. 91-100
-
-
Gerstein, M.B.1
-
53
-
-
77952908743
-
A large fraction of extragenic RNA pol II transcription sites overlap enhancers
-
(doi:10.1371/journal.pbio.1000384)
-
De Santa F et al. 2010 A large fraction of extragenic RNA pol II transcription sites overlap enhancers. PLoS Biol. 8, e1000384. (doi:10.1371/journal.pbio.1000384)
-
(2010)
PLoS Biol
, vol.8
-
-
de Santa, F.1
-
54
-
-
84861904178
-
Genome regulation by long noncoding RNAs
-
(doi:10.1146/annurev-biochem-051410- 092902)
-
Rinn JL, Chang HY. 2012 Genome regulation by long noncoding RNAs. Annu. Rev. Biochem. 81, 145-166. (doi:10.1146/annurev-biochem-051410- 092902)
-
(2012)
Annu Rev. Biochem
, vol.81
, pp. 145-166
-
-
Rinn, J.L.1
Chang, H.Y.2
-
55
-
-
84870182699
-
Noncoding transcription at enhancers: General principles and functional models
-
(doi:10.1146/ annurev-genet-110711-155459)
-
Natoli G, Andrau JC. 2012 Noncoding transcription at enhancers: general principles and functional models. Annu. Rev. Genet. 46, 1-19. (doi:10.1146/ annurev-genet-110711-155459)
-
(2012)
Annu. Rev. Genet
, vol.46
, pp. 1-19
-
-
Natoli, G.1
Andrau, J.C.2
-
56
-
-
77952367798
-
Widespread transcription at neuronal activity-regulated enhancers
-
(doi:10.1038/nature09033)
-
Kim TK et al. 2010 Widespread transcription at neuronal activity-regulated enhancers. Nature 465, 182-187. (doi:10.1038/nature09033)
-
(2010)
Nature
, vol.465
, pp. 182-187
-
-
Kim, T.K.1
-
57
-
-
84861964135
-
Controlling long-range genomic interactions at a native locus by targeted tethering of a looping factor
-
(doi:10.1016/j.cell.2012.03.051)
-
Deng W, Lee J, Wang H, Miller J, Reik A, Gregory PD, Dean A, Blobel GA. 2012 Controlling long-range genomic interactions at a native locus by targeted tethering of a looping factor. Cell 149, 1233-1244. (doi:10.1016/j.cell.2012.03.051)
-
(2012)
Cell
, vol.149
, pp. 1233-1244
-
-
Deng, W.1
Lee, J.2
Wang, H.3
Miller, J.4
Reik, A.5
Gregory, P.D.6
Dean, A.7
Blobel, G.A.8
-
58
-
-
80054702528
-
Two forms of loops generate the chromatin conformation of the immunoglobulin heavy-chain gene locus
-
(doi:10.1016/j.cell.2011.08.049)
-
Guo C, Gerasimova T, Hao H, Ivanova I, Chakraborty T, Selimyan R, Oltz EM, Sen R. 2011 Two forms of loops generate the chromatin conformation of the immunoglobulin heavy-chain gene locus. Cell 147, 332-343. (doi:10.1016/j.cell.2011.08.049)
-
(2011)
Cell
, vol.147
, pp. 332-343
-
-
Guo, C.1
Gerasimova, T.2
Hao, H.3
Ivanova, I.4
Chakraborty, T.5
Selimyan, R.6
Oltz, E.M.7
Sen, R.8
-
59
-
-
3543018516
-
Interaction between differentially methylated regions partitions the imprinted genes Igf2 and H19 into parentspecific chromatin loops
-
(doi:10.1038/ng1402)
-
Murrell A, Heeson S, Reik W. 2004 Interaction between differentially methylated regions partitions the imprinted genes Igf2 and H19 into parentspecific chromatin loops. Nat. Genet. 36, 889-893. (doi:10.1038/ng1402)
-
(2004)
Nat. Genet
, vol.36
, pp. 889-893
-
-
Murrell, A.1
Heeson, S.2
Reik, W.3
-
60
-
-
81855227640
-
A regulatory archipelago controls Hox genes transcription in digits
-
(doi:10.1016/j.cell.2011.10.023)
-
Montavon T, Soshnikova N, Mascrez B, Joye E, Thevenet L, Splinter E, de Laat W, Spitz F, Duboule D. 2011 A regulatory archipelago controls Hox genes transcription in digits. Cell 147, 1132-1145. (doi:10.1016/j.cell.2011.10.023)
-
(2011)
Cell
, vol.147
, pp. 1132-1145
-
-
Montavon, T.1
Soshnikova, N.2
Mascrez, B.3
Joye, E.4
Thevenet, L.5
Splinter, E.6
de Laat, W.7
Spitz, F.8
Duboule, D.9
|