-
1
-
-
0036803243
-
Intrinsically unstructured proteins
-
Tompa P (2002) Intrinsically unstructured proteins. Trends Biochem Sci 27:527-533.
-
(2002)
Trends Biochem Sci
, vol.27
, pp. 527-533
-
-
Tompa, P.1
-
2
-
-
13844255387
-
Natively unfolded proteins
-
Fink AL (2005) Natively unfolded proteins. Curr Opin Struct Biol 15:35-41.
-
(2005)
Curr Opin Struct Biol
, vol.15
, pp. 35-41
-
-
Fink, A.L.1
-
3
-
-
67650369989
-
Unfoldomics of human diseases: Linking protein intrinsic disorder with diseases
-
Uversky VN, Oldfield CJ, Midic U, Xie H, Xue B, Vucetic S, Iakoucheva LM, Obradovic Z, Dunker AK (2009) Unfoldomics of human diseases: Linking protein intrinsic disorder with diseases. BMC Genomics 10 Suppl 1:S7.
-
(2009)
BMC Genomics 10 Suppl
, vol.1
, pp. 7
-
-
Uversky, V.N.1
Oldfield, C.J.2
Midic, U.3
Xie, H.4
Xue, B.5
Vucetic, S.6
Iakoucheva, L.M.7
Obradovic, Z.8
Dunker, A.K.9
-
4
-
-
72449139985
-
Intrinsically disordered proteins and their environment: Effects of strong denaturants, temperature, pH, counter ions, membranes, binding partners, osmolytes, and macromolecular crowding
-
Uversky VN (2009) Intrinsically disordered proteins and their environment: Effects of strong denaturants, temperature, pH, counter ions, membranes, binding partners, osmolytes, and macromolecular crowding. Protein J 28:305-325.
-
(2009)
Protein J
, vol.28
, pp. 305-325
-
-
Uversky, V.N.1
-
6
-
-
84876281768
-
Unusual biophysics of intrinsically disordered proteins
-
Uversky VN (2013) Unusual biophysics of intrinsically disordered proteins. Biochim Biophys Acta 1834:932- 951.
-
(2013)
Biochim Biophys Acta
, pp. 932-951
-
-
Uversky, V.N.1
-
7
-
-
77951645923
-
Sequence determinants of compaction in intrinsically disordered proteins
-
Marsh JA, Forman-Kay JD (2010) Sequence determinants of compaction in intrinsically disordered proteins. Biophys J 98:2383-2390.
-
(2010)
Biophys J
, vol.98
, pp. 2383-2390
-
-
Marsh, J.A.1
Forman-Kay, J.D.2
-
8
-
-
69249094544
-
Structural characterization of alphasynuclein in an aggregation prone state
-
Cho MK, Nodet G, Kim HY, Jensen MR, Bernado P, Fernandez CO, Becker S, Blackledge M, Zweckstetter M (2009) Structural characterization of alphasynuclein in an aggregation prone state. Protein Sci 18:1840-1846.
-
(2009)
Protein Sci
, vol.18
, pp. 1840-1846
-
-
Cho, M.K.1
Nodet, G.2
Kim, H.Y.3
Jensen, M.R.4
Bernado, P.5
Fernandez, C.O.6
Becker, S.7
Blackledge, M.8
Zweckstetter, M.9
-
9
-
-
0033539662
-
Natively unfolded human prothymosin alpha adopts partially folded collapsed conformation at acidic pH
-
Uversky VN, Gillespie JR, Millett IS, Khodyakova AV, Vasiliev AM, Chernovskaya TV, Vasilenko RN, Kozovskaya GD, Dolgikh DA, Fink AL, Doniach S, Abramov VM (1999) Natively unfolded human prothymosin alpha adopts partially folded collapsed conformation at acidic pH. Biochemistry 38:15009-15016.
-
(1999)
Biochemistry
, vol.38
, pp. 15009-15016
-
-
Uversky, V.N.1
Gillespie, J.R.2
Millett, I.S.3
Khodyakova, A.V.4
Vasiliev, A.M.5
Chernovskaya, T.V.6
Vasilenko, R.N.7
Kozovskaya, G.D.8
Dolgikh, D.A.9
Fink, A.L.10
Doniach, S.11
Abramov, V.M.12
-
10
-
-
39649119621
-
The pH of the secretory pathway: Measurement, determinants, and regulation
-
Paroutis P, Touret N, Grinstein S (2004) The pH of the secretory pathway: Measurement, determinants, and regulation. Physiology 19:207-215.
-
(2004)
Physiology
, vol.19
, pp. 207-215
-
-
Paroutis, P.1
Touret, N.2
Grinstein, S.3
-
11
-
-
12444279265
-
Origin of cancer cells
-
Warburg O (1956) Origin of cancer cells. Science 123: 309-314.
-
(1956)
Science
, vol.123
, pp. 309-314
-
-
Warburg, O.1
-
13
-
-
70449534683
-
The protein meta-structure: A novel concept for chemical and molecular biology
-
Konrat R (2009) The protein meta-structure: A novel concept for chemical and molecular biology. Cell Mol Life Sci 66:3625-3639.
-
(2009)
Cell Mol Life Sci
, vol.66
, pp. 3625-3639
-
-
Konrat, R.1
-
14
-
-
84866309681
-
Toward rational fragment-based lead design without 3D structures
-
Henen MA, Coudevylle N, Geist L, Konrat R (2012) Toward rational fragment-based lead design without 3D structures. J Med Chem 55:7909-7919.
-
(2012)
J Med Chem
, vol.55
, pp. 7909-7919
-
-
Henen, M.A.1
Coudevylle, N.2
Geist, L.3
Konrat, R.4
-
15
-
-
84857711352
-
Structural analysis of the Plasmodium falciparum erythrocyte membrane protein 1 (PfEMP1) intracellular domain reveals a conserved interaction epitope
-
Mayer C, Slater L, Erat MC, Konrat R, Vakonakis I (2012) Structural analysis of the Plasmodium falciparum erythrocyte membrane protein 1 (PfEMP1) intracellular domain reveals a conserved interaction epitope. J Biol Chem 287:7182-7189.
-
(2012)
J Biol Chem
, vol.287
, pp. 7182-7189
-
-
Mayer, C.1
Slater, L.2
Erat, M.C.3
Konrat, R.4
Vakonakis, I.5
-
16
-
-
83755206931
-
The C-terminus of ICln is natively disordered but displays local structural preformation
-
Schedlbauer A, Gandini R, Kontaxis G, Paulmichl M, Furst J, Konrat R (2011) The C-terminus of ICln is natively disordered but displays local structural preformation. Cell Physiol Biochem 28:1203-1210.
-
(2011)
Cell Physiol Biochem
, vol.28
, pp. 1203-1210
-
-
Schedlbauer, A.1
Gandini, R.2
Kontaxis, G.3
Paulmichl, M.4
Furst, J.5
Konrat, R.6
-
17
-
-
78650462989
-
Identification of an RNase J ortholog in Sulfolobus solfataricus: Implications for 50-to-30 directional decay and 50-end protection of mRNA in Crenarchaeota
-
Hasenohrl D, Konrat R, Blasi U (2011) Identification of an RNase J ortholog in Sulfolobus solfataricus: Implications for 50-to-30 directional decay and 50-end protection of mRNA in Crenarchaeota. RNA 17:99-107.
-
(2011)
RNA
, vol.17
, pp. 99-107
-
-
Hasenohrl, D.1
Konrat, R.2
Blasi, U.3
-
18
-
-
65249109840
-
Inhibition of Myc-induced cell transformation by brain acid-soluble protein 1 (BASP1)
-
Hartl M, Nist A, Khan MI, Valovka T, Bister K (2009) Inhibition of Myc-induced cell transformation by brain acid-soluble protein 1 (BASP1). Proc Natl Acad Sci U S A 106:5604-5609.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 5604-5609
-
-
Hartl, M.1
Nist, A.2
Khan, M.I.3
Valovka, T.4
Bister, K.5
-
19
-
-
84861986053
-
Wnt/beta-catenin signaling and disease
-
Clevers H, Nusse R (2012) Wnt/beta-catenin signaling and disease. Cell 149:1192-1205.
-
(2012)
Cell
, vol.149
, pp. 1192-1205
-
-
Clevers, H.1
Nusse, R.2
-
20
-
-
16244404569
-
Molecular fragment replacement approach to protein structure determination by chemical shift and dipolar homology database mining
-
Kontaxis G, Delaglio F, Bax A (2005) Molecular fragment replacement approach to protein structure determination by chemical shift and dipolar homology database mining. Methods Enzymol 394:42-78.
-
(2005)
Methods Enzymol
, vol.394
, pp. 42-78
-
-
Kontaxis, G.1
Delaglio, F.2
Bax, A.3
-
22
-
-
0035815664
-
Evidence for a partially folded intermediate in alpha-synuclein fibril formation
-
Uversky VN, Li J, Fink AL (2001) Evidence for a partially folded intermediate in alpha-synuclein fibril formation. J Biol Chem 276:10737-10744.
-
(2001)
J Biol Chem
, vol.276
, pp. 10737-10744
-
-
Uversky, V.N.1
Li, J.2
Fink, A.L.3
-
23
-
-
48249155388
-
Characterization of BASP1-mediated neurite outgrowth
-
Korshunova I, Caroni P, Kolkova K, Berezin V, Bock E, Walmod PS (2008) Characterization of BASP1-mediated neurite outgrowth. J Neurosci Res 86:2201-2213.
-
(2008)
J Neurosci Res
, vol.86
, pp. 2201-2213
-
-
Korshunova, I.1
Caroni, P.2
Kolkova, K.3
Berezin, V.4
Bock, E.5
Walmod, P.S.6
-
24
-
-
9144262333
-
BASP1 is a transcriptional cosuppressor for the Wilms' tumor suppressor protein WT1
-
Carpenter B, Hill KJ, Charalambous M, Wagner KJ, Lahiri D, James DI, Andersen JS, Schumacher V, Royer- Pokora B, Mann M, Ward A, Roberts SG (2004) BASP1 is a transcriptional cosuppressor for the Wilms' tumor suppressor protein WT1. Mol Cell Biol 24:537-549.
-
(2004)
Mol Cell Biol
, vol.24
, pp. 537-549
-
-
Carpenter, B.1
Hill, K.J.2
Charalambous, M.3
Wagner, K.J.4
Lahiri, D.5
James, D.I.6
Andersen, J.S.7
Schumacher, V.8
Royer- Pokora, B.9
Mann, M.10
Ward, A.11
Roberts, S.G.12
-
25
-
-
59649111297
-
Dynamic interaction between WT1 and BASP1 in transcriptional regulation during differentiation
-
Green LM, Wagner KJ, Campbell HA, Addison K, Roberts SG (2009) Dynamic interaction between WT1 and BASP1 in transcriptional regulation during differentiation. Nucleic Acids Res 37:431-440.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 431-440
-
-
Green, L.M.1
Wagner, K.J.2
Campbell, H.A.3
Addison, K.4
Roberts, S.G.5
-
26
-
-
33646358424
-
HET-SOFAST NMR for fast detection of structural compactness and heterogeneity along polypeptide chains
-
Schanda P, Forge V, Brutscher B (2006) HET-SOFAST NMR for fast detection of structural compactness and heterogeneity along polypeptide chains. Magn Reson Chem 44 Spec No:S177- S 184.
-
(2006)
Magn Reson Chem 44 Spec
, Issue.S177
, pp. 184
-
-
Schanda, P.1
Forge, V.2
Brutscher, B.3
-
27
-
-
33846344623
-
Deeranalysis2006 - A comprehensive software package for analyzing pulsed ELDOR data
-
Jeschke G, Chechik V, Ionita P, Godt A, Zimmermann H, Banham J, Timmel CR, Hilger D, Jung H (2006) Deeranalysis2006 - a comprehensive software package for analyzing pulsed ELDOR data. Appl Magn Reson 30:473-498.
-
(2006)
Appl Magn Reson
, vol.30
, pp. 473-498
-
-
Jeschke, G.1
Chechik, V.2
Ionita, P.3
Godt, A.4
Zimmermann, H.5
Banham, J.6
Timmel, C.R.7
Hilger, D.8
Jung, H.9
-
28
-
-
0034095898
-
Nuclear translocation of beta-catenin in colorectal cancer
-
Kobayashi M, Honma T, Matsuda Y, Suzuki Y, Narisawa R, Ajioka Y, Asakura H (2000) Nuclear translocation of beta-catenin in colorectal cancer. Br J Cancer 82:1689-1693.
-
(2000)
Br J Cancer
, vol.82
, pp. 1689-1693
-
-
Kobayashi, M.1
Honma, T.2
Matsuda, Y.3
Suzuki, Y.4
Narisawa, R.5
Ajioka, Y.6
Asakura, H.7
-
29
-
-
0035830957
-
Thermodynamics of the high-affinity interaction of TCF4 with beta-catenin
-
Knapp S, Zamai M, Volpi D, Nardese V, Avanzi N, Breton J, Plyte S, Flocco M, Marconi M, Isacchi A, Caiolfa VR (2001) Thermodynamics of the high-affinity interaction of TCF4 with beta-catenin. J Mol Biol 306:1179-1189.
-
(2001)
J Mol Biol
, vol.306
, pp. 1179-1189
-
-
Knapp, S.1
Zamai, M.2
Volpi, D.3
Nardese, V.4
Avanzi, N.5
Breton, J.6
Plyte, S.7
Flocco, M.8
Marconi, M.9
Isacchi, A.10
Caiolfa, V.R.11
-
30
-
-
70349085815
-
Context-independent, temperature-dependent helical propensities for amino acid residues
-
Moreau RJ, Schubert CR, Nasr KA, Torok M, Miller JS, Kennedy RJ, Kemp DS (2009) Context-independent, temperature-dependent helical propensities for amino acid residues. J Am Chem Soc 131:13107-13116.
-
(2009)
J Am Chem Soc
, vol.131
, pp. 13107-13116
-
-
Moreau, R.J.1
Schubert, C.R.2
Nasr, K.A.3
Torok, M.4
Miller, J.S.5
Kennedy, R.J.6
Kemp, D.S.7
-
31
-
-
82655179695
-
Meta-structure correlation in protein space unveils different selection rules for folded and intrinsically disordered proteins
-
Naranjo Y, Pons M, Konrat R (2012) Meta-structure correlation in protein space unveils different selection rules for folded and intrinsically disordered proteins. Mol Biosyst 8:411-416.
-
(2012)
Mol Biosyst
, vol.8
, pp. 411-416
-
-
Naranjo, Y.1
Pons, M.2
Konrat, R.3
-
32
-
-
20444414545
-
Linear motifs: Evolutionary interaction switches
-
Neduva V, Russell RB (2005) Linear motifs: Evolutionary interaction switches. FEBS Lett 579:3342-3345.
-
(2005)
FEBS Lett
, vol.579
, pp. 3342-3345
-
-
Neduva, V.1
Russell, R.B.2
-
33
-
-
33746812318
-
SLiMDisc: Short, linear motif discovery, correcting for common evolutionary descent
-
Davey NE, Shields DC, Edwards RJ (2006) SLiMDisc: Short, linear motif discovery, correcting for common evolutionary descent. Nucleic Acids Res 34:3546-3554.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 3546-3554
-
-
Davey, N.E.1
Shields, D.C.2
Edwards, R.J.3
-
34
-
-
34250815165
-
Characterization of molecular recognition features, MoRFs, and their binding partners
-
Vacic V, Oldfield CJ, Mohan A, Radivojac P, Cortese MS, Uversky VN, Dunker AK (2007) Characterization of molecular recognition features, MoRFs, and their binding partners. J Proteome Res 6:2351-2366.
-
(2007)
J Proteome Res
, vol.6
, pp. 2351-2366
-
-
Vacic, V.1
Oldfield, C.J.2
Mohan, A.3
Radivojac, P.4
Cortese, M.S.5
Uversky, V.N.6
Dunker, A.K.7
-
35
-
-
2142757231
-
Preformed structural elements feature in partner recognition by intrinsically unstructured proteins
-
Fuxreiter M, Simon I, Friedrich P, Tompa P (2004) Preformed structural elements feature in partner recognition by intrinsically unstructured proteins. J Mol Biol 338:1015-1026.
-
(2004)
J Mol Biol
, vol.338
, pp. 1015-1026
-
-
Fuxreiter, M.1
Simon, I.2
Friedrich, P.3
Tompa, P.4
-
36
-
-
0032749078
-
Intrinsically unstructured proteins: Re-assessing the protein structure-function paradigm
-
Wright PE, Dyson HJ (1999) Intrinsically unstructured proteins: Re-assessing the protein structure-function paradigm. J Mol Biol 293:321-331.
-
(1999)
J Mol Biol
, vol.293
, pp. 321-331
-
-
Wright, P.E.1
Dyson, H.J.2
-
37
-
-
37749053887
-
Fuzzy complexes: Polymorphism and structural disorder in protein-protein interactions
-
Tompa P, Fuxreiter M (2008) Fuzzy complexes: Polymorphism and structural disorder in protein-protein interactions. Trends Biochem Sci 33:2-8.
-
(2008)
Trends Biochem Sci
, vol.33
, pp. 2-8
-
-
Tompa, P.1
Fuxreiter, M.2
-
38
-
-
67650045816
-
Limitations of induced folding in molecular recognition by intrinsically disordered proteins
-
Hazy E, Tompa P (2009) Limitations of induced folding in molecular recognition by intrinsically disordered proteins. ChemPhysChem 10:1415-1419.
-
(2009)
ChemPhysChem
, vol.10
, pp. 1415-1419
-
-
Hazy, E.1
Tompa, P.2
-
40
-
-
0035180690
-
Tcf4 can specifically recognize beta-catenin using alternative conformations
-
Graham TA, Ferkey DM, Mao F, Kimelman D, Xu W (2001) Tcf4 can specifically recognize beta-catenin using alternative conformations. Nat Struct Biol 8: 1048-1052.
-
(2001)
Nat Struct Biol
, vol.8
, pp. 1048-1052
-
-
Graham, T.A.1
Ferkey, D.M.2
Mao, F.3
Kimelman, D.4
Xu, W.5
-
41
-
-
84883489235
-
(1)H, (13)C and (15)N resonance assignments of human BASP1
-
doi: 10.1007/s12104-012-9436-4
-
Geist L, Zawadzka-Kazimierczuk A, Saxena S, Zerko S, Kozminski W, Konrat R (2012) (1)H, (13)C and (15)N resonance assignments of human BASP1. Biomol NMR Assign; doi: 10.1007/s12104-012-9436-4.
-
(2012)
Biomol NMR Assign
-
-
Geist, L.1
Zawadzka-Kazimierczuk, A.2
Saxena, S.3
Zerko, S.4
Kozminski, W.5
Konrat, R.6
-
42
-
-
79960005608
-
The metastasis-associated extracellular matrix protein osteopontin forms transient structure in ligand interaction sites
-
Platzer G, Schedlbauer A, Chemelli A, Ozdowy P, Coudevylle N, Auer R, Kontaxis G, Hartl M, Miles AJ, Wallace BA, Glatter O, Bister K, Konrat R (2011) The metastasis-associated extracellular matrix protein osteopontin forms transient structure in ligand interaction sites. Biochemistry 50:6113-6124.
-
(2011)
Biochemistry
, vol.50
, pp. 6113-6124
-
-
Platzer, G.1
Schedlbauer, A.2
Chemelli, A.3
Ozdowy, P.4
Coudevylle, N.5
Auer, R.6
Kontaxis, G.7
Hartl, M.8
Miles, A.J.9
Wallace, B.A.10
Glatter, O.11
Bister, K.12
Konrat, R.13
-
43
-
-
0036290220
-
Direct conversion of EPR dipolar time evolution data to distance distributions
-
Jeschke G, Koch A, Jonas U, Godt A (2002) Direct conversion of EPR dipolar time evolution data to distance distributions. J Magn Reson 155:72-82.
-
(2002)
J Magn Reson
, vol.155
, pp. 72-82
-
-
Jeschke, G.1
Koch, A.2
Jonas, U.3
Godt, A.4
-
44
-
-
0032476844
-
Determination of end-toend distances in a series of TEMPO diradicals of up to 2.8 nm length with a new four-pulse double electron electron resonance experiment
-
Martin RE, Pannier M, Diederich F, Gramlich V, Hubrich M, Spiess HW (1998) Determination of end-toend distances in a series of TEMPO diradicals of up to 2.8 nm length with a new four-pulse double electron electron resonance experiment. Angew Chem Int Ed 37:2834-2837.
-
(1998)
Angew Chem Int Ed
, vol.37
, pp. 2834-2837
-
-
Martin, R.E.1
Pannier, M.2
Diederich, F.3
Gramlich, V.4
Hubrich, M.5
Spiess, H.W.6
|