-
1
-
-
37549003336
-
MapReduce: Simplified data processing on large clusters
-
Dean, J. and Ghemawat, S. (2008) MapReduce: simplified data processing on large clusters. Commun. ACM, 51, 107-113.
-
(2008)
Commun. ACM
, vol.51
, pp. 107-113
-
-
Dean, J.1
Ghemawat, S.2
-
2
-
-
84975742565
-
A map of human genome variation from population-scale sequencing
-
1000 Genomes Project Consortium, et al.
-
1000 Genomes Project Consortium. et al. (2010) A map of human genome variation from population-scale sequencing. Nature, 467, 1061-1073.
-
(2010)
Nature
, vol.467
, pp. 1061-1073
-
-
-
3
-
-
84943817322
-
Error detecting and error correcting codes
-
Hamming, R.W. (1950) Error detecting and error correcting codes. AT&T Tech. J., 29, 147-160.
-
(1950)
AT&T Tech. J.
, vol.29
, pp. 147-160
-
-
Hamming, R.W.1
-
4
-
-
79251587455
-
Metagenomic discovery of biomass-degrading genes and genomes from cow rumen
-
Hess, M. et al. (2011) Metagenomic discovery of biomass-degrading genes and genomes from cow rumen. Science, 331, 463-467.
-
(2011)
Science
, vol.331
, pp. 463-467
-
-
Hess, M.1
-
5
-
-
84861736018
-
Eoulsan: A cloud computing-based framework facilitating high throughput sequencing analyses
-
Jourdren, L. et al. (2012) Eoulsan: a cloud computing-based framework facilitating high throughput sequencing analyses. Bioinformatics, 28, 1542-1543.
-
(2012)
Bioinformatics
, vol.28
, pp. 1542-1543
-
-
Jourdren, L.1
-
6
-
-
79961233639
-
Classifying proteins into functional groups based on all-versus-all BLAST of 10 million proteins
-
Kolker, N. et al. (2011) Classifying proteins into functional groups based on all-versus-all BLAST of 10 million proteins. Omics, 15, 513-521.
-
(2011)
Omics
, vol.15
, pp. 513-521
-
-
Kolker, N.1
-
7
-
-
72849149423
-
Searching for SNPs with cloud computing
-
Langmead, B. et al. (2009) Searching for SNPs with cloud computing. Genome Biol., 10, R134.
-
(2009)
Genome Biol.
, vol.10
-
-
Langmead, B.1
-
8
-
-
77955343193
-
Cloud-scale RNA-sequencing differential expression analysis with Myrna
-
Langmead, B. et al. (2010) Cloud-scale RNA-sequencing differential expression analysis with Myrna. Genome Biol., 11, R83.
-
(2010)
Genome Biol.
, vol.11
-
-
Langmead, B.1
-
10
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Li, H. et al. (2009) The sequence alignment/map format and SAMtools. Bioinformatics, 25, 2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
-
11
-
-
77956295988
-
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
-
McKenna, A. et al. (2010) The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res., 20, 1297-1303.
-
(2010)
Genome Res.
, vol.20
, pp. 1297-1303
-
-
McKenna, A.1
-
12
-
-
72849144434
-
Sequencing technologies - The next generation
-
Metzker, M.L. (2010) Sequencing technologies - the next generation. Nat. Rev. Genet., 11, 31-46.
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 31-46
-
-
Metzker, M.L.1
-
13
-
-
0023461268
-
Specific synthesis of DNA in vitro via a polymerase-catalyzed chain-reaction
-
Mullis, K.B. and Faloona, F.A. (1987) Specific synthesis of DNA in vitro via a polymerase-catalyzed chain-reaction. Method Enzymol., 155, 335-350.
-
(1987)
Method Enzymol.
, vol.155
, pp. 335-350
-
-
Mullis, K.B.1
Faloona, F.A.2
-
14
-
-
79957895842
-
CloudAligner: A fast and full-featured MapReduce based tool for sequence mapping
-
Nguyen, T. et al. (2011) CloudAligner: a fast and full-featured MapReduce based tool for sequence mapping. BMC Res. Notes, 4, 171.
-
(2011)
BMC Res. Notes
, vol.4
, pp. 171
-
-
Nguyen, T.1
-
15
-
-
84859075799
-
Hadoop-BAM: Directly manipulating next generation sequencing data in the cloud
-
Niemenmaa, M. et al. (2012) Hadoop-BAM: directly manipulating next generation sequencing data in the cloud. Bioinformatics, 28, 876-877.
-
(2012)
Bioinformatics
, vol.28
, pp. 876-877
-
-
Niemenmaa, M.1
-
16
-
-
77957093212
-
Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores
-
Pope, P.B. et al. (2010) Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores. Proc. Natl Acad. Sci. USA, 107, 14793-14798.
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 14793-14798
-
-
Pope, P.B.1
-
17
-
-
65649120715
-
CloudBurst: Highly sensitive read mapping with MapReduce
-
Schatz, M.C. (2009) CloudBurst: highly sensitive read mapping with MapReduce. Bioinformatics, 25, 1363-1369.
-
(2009)
Bioinformatics
, vol.25
, pp. 1363-1369
-
-
Schatz, M.C.1
-
18
-
-
56549086632
-
A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes
-
Stefan, K. et al. (2008) A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes. BMC Genomics, 9, 1471-2164.
-
(2008)
BMC Genomics
, vol.9
, pp. 1471-2164
-
-
Stefan, K.1
-
19
-
-
78650811522
-
An overview of the Hadoop/MapReduce/HBase framework and its current applications in bioinformatics
-
Taylor, R.C. (2010) An overview of the Hadoop/MapReduce/HBase framework and its current applications in bioinformatics. BMC Bioinformatics, 11 (Suppl. 12), S1.
-
(2010)
BMC Bioinformatics
, vol.11
, Issue.SUPPL. 12
-
-
Taylor, R.C.1
-
20
-
-
36549000721
-
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite
-
Warnecke, F. et al. (2007) Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite. Nature, 450, 560-565.
-
(2007)
Nature
, vol.450
, pp. 560-565
-
-
Warnecke, F.1
-
21
-
-
85040175609
-
Resilient distributed datasets: A fault-tolerant abstraction for in-memory cluster computing
-
USENIX Association, San Jose, CA
-
Zaharia, M. et al. (2012) Resilient distributed datasets: a fault-tolerant abstraction for in-memory cluster computing. In: Proceedings of the 9th USENIX Conference on Networked Systems Design and Implementation. USENIX Association, San Jose, CA, p. 2.
-
(2012)
Proceedings of the 9th USENIX Conference on Networked Systems Design and Implementation.
, pp. 2
-
-
Zaharia, M.1
-
22
-
-
43149115851
-
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino, D.R. and Birney, E. (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res., 18, 821-829.
-
(2008)
Genome Res.
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
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