-
1
-
-
0037933181
-
Myoglobin function reassessed
-
Wittenberg, J. B.; Wittenberg, B. A. Myoglobin Function Reassessed. J. Exp. Biol. 2003, 206, 2011-2020.
-
(2003)
J. Exp. Biol.
, vol.206
, pp. 2011-2020
-
-
Wittenberg, J.B.1
Wittenberg, B.2
-
2
-
-
0035895228
-
Myoglobin: A scavenger of bioactive no
-
Flogel, U.; Merx, M. W.; Godecke, A.; Decking, U. K. M.; Schrader, J. Myoglobin: A Scavenger of Bioactive NO. Proc. Natl. Acad. Sci. U.S.A. 2001, 98, 735-740.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, Issue.98
, pp. 735-740
-
-
Flogel, U.1
Merx, M.W.2
Godecke, A.3
Decking, M.U.K.4
Schrader, J.5
-
3
-
-
0001266102
-
A three-dimensional model of the myoglobin molecule obtained by x-ray analysis
-
Kendrew, J. C.; Bodo, G.; Dintzis, H. M.; Parrish, R. G.; Wyckoff, H.; Phillips, D. C. A Three-Dimensional Model of the Myoglobin Molecule Obtained by X-ray Analysis. Nature 1958, 181, 662-666.
-
(1958)
Nature
, vol.181
, pp. 662-666
-
-
Kendrew, J.C.1
Bodo, G.2
Dintzis, H.M.3
Parrish, R.G.4
Wyckoff, H.5
Phillips, D.C.6
-
4
-
-
0030837441
-
A myoglobin variant with a polar substitution in a conserved hydrophobic bluster in the heme binding pocket
-
Maurus, R.; Overall, C. M.; Bogumil, R.; Luo, Y.; Mauk, A. G.; Smith, M.; Brayer, G. D. A Myoglobin Variant with a Polar Substitution in a Conserved Hydrophobic Bluster in the Heme Binding Pocket. Biochim. Biophys. Acta 1997, 1341, 1-13.
-
(1997)
Biochim. Biophys. Acta
, vol.1341
, pp. 1-13
-
-
Maurus, R.1
Overall, C.M.2
Bogumil, R.3
Luo, Y.4
Mauk, A.G.5
Smith, M.6
Brayer, G.D.7
-
5
-
-
0033574735
-
A steric mechanism for inhibition of co binding to heme proteins
-
Kachalova, G. S.; Popov, A. N.; Bartunik, H. D. A Steric Mechanism for Inhibition of CO Binding to Heme Proteins. Science 1999, 284, 473-476.
-
(1999)
Science
, vol.284
, pp. 473-476
-
-
Kachalova, G.S.1
Popov, A.N.2
Bartunik, H.D.3
-
6
-
-
0038853525
-
Crystal structures of myoglobin-ligand complexes at near-atomic resolution
-
Vojtechovsky, J.; Chu, K.; Berendzen, J.; Sweet, R. M.; Schlichting, I. Crystal Structures of Myoglobin-Ligand Complexes at Near-Atomic Resolution. Biophys. J. 1999, 77, 2153-2174.
-
(1999)
Biophys. J.
, vol.77
, pp. 2153-2174
-
-
Vojtechovsky, J.1
Chu, K.2
Berendzen, J.3
Sweet, R.M.4
Schlichting, I.5
-
7
-
-
0034708201
-
Structure of a ligand-binding intermediate in wild-type carbonmonoxy myoglobin
-
Chu, K.; Vojtchovsky, J.; McMahon, B. H.; Sweet, R. M.; Berendzen, J.; Schlichting, I. Structure of a Ligand-Binding Intermediate in Wild-Type Carbonmonoxy Myoglobin. Nature 2000, 403, 921-923.
-
(2000)
Nature
, Issue.403
, pp. 921-923
-
-
Chu, K.1
Vojtchovsky, J.2
McMahon, B.3
Sweet, R.4
Berendzen, J.5
Schlichting, I.6
-
8
-
-
0037187793
-
Hydrogen and deuterium in myoglobin as seen by a neutron structure determination at 1.5 åresolution
-
Ostermann, A.; Tanaka, I.; Engler, N.; Niimura, N.; Parak, F. G. Hydrogen and Deuterium in Myoglobin as Seen by a Neutron Structure Determination at 1.5 Å Resolution. Biophys. Chem. 2002, 95, 183-193.
-
(2002)
Biophys. Chem.
, vol.95
, pp. 183-193
-
-
Ostermann, A.1
Tanaka, I.2
Engler, N.3
Niimura, N.4
Parak, F.5
-
9
-
-
34548190799
-
Crystallographic and spectroscopic studies of peroxide-derived myoglobin compound ii and occurrence of protonated feiv-o
-
Hersleth, H.-P.; Uchida, T.; Røhr, Å. K.; Teschner, T.; Schunemann, V.; Kitagawa, T.; Trautwein, A. X.; Gorbitz, C. H.; Andersson, K. K. Crystallographic and Spectroscopic Studies of Peroxide-Derived Myoglobin Compound II and Occurrence of Protonated FeIV-O. J. Biol. Chem. 2007, 282, 23372-23386.
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 23372-23386
-
-
Hersleth, H.-P.1
Uchida, T.2
Røhr, A.K.3
Teschner, T.4
Schunemann, V.5
Kitagawa, T.6
Trautwein, A.7
Gorbitz, C.8
Andersson, K.9
-
10
-
-
0016828929
-
Dynamics of ligand binding to myoglobin
-
Austin, R. H.; Beeson, K. W.; Eisenstein, L.; Frauenfelder, H.; Gunsalus, I. C. Dynamics of Ligand Binding to Myoglobin. Biochemistry 1975, 14, 5355-5373.
-
(1975)
Biochemistry
, vol.14
, pp. 5355-5373
-
-
Austin, R.H.1
Beeson, K.W.2
Eisenstein, L.3
Frauenfelder, H.4
Gunsalus, I.C.5
-
11
-
-
0021796467
-
Rate theories and puzzles of hemeprotein kinetics
-
Frauenfelder, H.; Wolynes, P. G. Rate Theories and Puzzles of Hemeprotein Kinetics. Science 1985, 229, 337-345.
-
(1985)
Science
, vol.229
, pp. 337-345
-
-
Frauenfelder, H.1
Wolynes, P.2
-
12
-
-
0023715797
-
Picosecond transient absorption study of photodissociated carboxy hemoglobin and myoglobin
-
Janes, S. M.; Dalickas, G. A.; Eaton, W. A.; Hochstrasser, R. M. Picosecond Transient Absorption Study of Photodissociated Carboxy Hemoglobin and Myoglobin. Biophys. J. 1988, 54, 545-549.
-
(1988)
Biophys. J.
, vol.54
, pp. 545-549
-
-
Janes, S.M.1
Dalickas, G.A.2
Eaton, W.A.3
Hochstrasser, R.M.4
-
13
-
-
0025091840
-
Dynamics of myoglobin: Comparison of simulation results with neutron scattering spectra
-
Smith, J.; Kuczera, K.; Karplus, M. Dynamics of Myoglobin: Comparison of Simulation Results with Neutron Scattering Spectra. Proc. Natl. Acad. Sci. U.S.A. 1990, 87, 1601-1605.
-
(1990)
Proc. Natl. Acad. Sci. U.S.A.
, vol.87
, pp. 1601-1605
-
-
Smith, J.1
Kuczera, K.2
Karplus, M.3
-
14
-
-
0029647452
-
Binding of co to myoglobin from a heme pocket docking site to form nearly linear fe-c-o
-
Lim, M.; Jackson, T. A.; Anfinrud, P. A. Binding of CO to Myoglobin from a Heme Pocket Docking Site to Form Nearly Linear Fe-C-O. Science 1995, 269, 962-966.
-
(1995)
Science
, vol.269
, pp. 962-966
-
-
Lim, M.1
Jackson, T.A.2
Anfinrud, P.A.3
-
15
-
-
0029894282
-
Kinetic pathwaysnd barriers for ligand binding to myoglobin
-
Olson, J. S.; Phillips, G. N., Jr. Kinetic Pathways and Barriers for Ligand Binding to Myoglobin. J. Biol. Chem. 1996, 271, 17593-17596.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 17593-17596
-
-
Olson, J.S.1
Phillips Jr., G.N.2
-
16
-
-
0034091637
-
The role of cavities in protein dynamics: Crystal structure of a photolytic intermediate of a mutant myoglobin
-
Brunori, M.; Vallone, B.; Cutruzzola, F.; Travaglini-Allocatelli, C.; Berendzen, J.; Chu, K.; Sweet, R. M.; Schlichting, I. The Role of Cavities in Protein Dynamics: Crystal Structure of a Photolytic Intermediate of a Mutant Myoglobin. Proc. Natl. Acad. Sci. U.S.A. 2000, 97, 2058-2063.
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, Issue.97
, pp. 2058-2063
-
-
Brunori, M.1
Vallone, B.2
Cutruzzola, F.3
Travaglini-Allocatelli, C.4
Berendzen, J.5
Chu, K.6
Sweet, R.7
Schlichting, I.8
-
17
-
-
0035873788
-
Water penetration and binding to ferric myoglobin
-
Cao, W.; Christian, J. F.; Champion, P. M.; Rosca, F.; Sage, J. T. Water Penetration and Binding to Ferric Myoglobin. Biochemistry 2001, 40, 5728-5737.
-
(2001)
Biochemistry
, vol.40
, pp. 5728-5737
-
-
Cao, W.1
Christian, J.F.2
Champion, P.M.3
Rosca, F.4
Sage, J.T.5
-
18
-
-
0035895937
-
Mapping the pathways for o2 entry into and exit from myoglobin
-
Scott, E. E.; Gibson, Q. H.; Olson, J. S. Mapping the Pathways for O2 Entry into and Exit from Myoglobin. J. Biol. Chem. 2001, 276, 5177-5188.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 5177-5188
-
-
Scott, E.E.1
Gibson, Q.H.2
Olson, J.S.3
-
19
-
-
0035923445
-
Protein conformational relaxation and ligand migration in myoglobin: A nanosecond to millisecond molecular movie from time-resolved laue x-ray diffraction
-
Srajer, V.; Ren, Z.; Teng, T.-Y.; Schmidt, M.; Ursby, T.; Bourgeois, D.; Pradervand, C.; Schildkamp, W.; Wulff, M.; Moffat, K. Protein Conformational Relaxation and Ligand Migration in Myoglobin: A Nanosecond to Millisecond Molecular Movie from Time-Resolved Laue X-ray Diffraction. Biochemistry 2001, 40, 13802-13815.
-
(2001)
Biochemistry
, vol.40
, pp. 13802-13815
-
-
Srajer, V.1
Ren, Z.2
Teng, T.-Y.3
Schmidt, M.4
Ursby, T.5
Bourgeois, D.6
Pradervand, C.7
Schildkamp, W.8
Wulff, M.9
Moffat, K.10
-
20
-
-
0038047431
-
Watching a protein as it functions with 150-ps time-resolved x-ray crystallography
-
Schotte, F.; Lim, M.; Jackson, T. A.; Smirnov, A. V.; Soman, J.; Olson, J. S.; Phillips, G. N., Jr.; Wulff, M.; Anfinrud, P. A. Watching a Protein as It Functions with 150-ps Time-Resolved X-ray Crystallography. Science 2003, 300, 1944-1947.
-
(2003)
Science
, vol.300
, pp. 1944-1947
-
-
Schotte, F.1
Lim, M.2
Jackson, T.A.3
Smirnov, A.V.4
Soman, J.5
Olson, J.S.6
Phillips Jr., G.N.7
Wulff, M.8
Anfinrud, P.A.9
-
21
-
-
4444253708
-
Coupling of protein relaxation to ligand binding and migration in myoglobin
-
Agmon, N. Coupling of Protein Relaxation to Ligand Binding and Migration in Myoglobin. Biophys. J. 2004, 87, 1537-1543.
-
(2004)
Biophys. J
, vol.87
, pp. 1537-1543
-
-
Agmon, N.1
-
22
-
-
7444230904
-
Unveiling functional protein motions with picosecond x-ray crystallography and molecular dynamics simulations
-
Hummer, G.; Schotte, F.; Anfinrud, P. A. Unveiling Functional Protein Motions with Picosecond X-ray Crystallography and Molecular Dynamics Simulations. Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 15330-15334.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 15330-15334
-
-
Hummer, G.1
Schotte, F.2
Anfinrud, P.A.3
-
23
-
-
4644277323
-
The escape of carbon monoxide from myoglobin to solution at physiological temperature
-
Nishihara, Y.; Sakakura, M.; Kimura, Y.; Terazima, M. The Escape of Carbon Monoxide from Myoglobin to Solution at Physiological Temperature. J. Am. Chem. Soc. 2004, 126, 11877-11888.
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 11877-11888
-
-
Nishihara, Y.1
Sakakura, M.2
Kimura, Y.3
Terazima, M.4
-
24
-
-
0346057931
-
Competition with xenon elicits ligand migration and escape pathways in myoglobin
-
Tetreau, C.; Blouquit, Y.; Novikov, E.; Quiniou, E.; Lavalette, D. Competition with Xenon Elicits Ligand Migration and Escape Pathways in Myoglobin. Biophys. J. 2004, 66, 435-447.
-
(2004)
Biophys. J.
, vol.66
, pp. 435-447
-
-
Tetreau, C.1
Blouquit, Y.2
Novikov, E.3
Quiniou, E.4
Lavalette, D.5
-
25
-
-
25444467791
-
Free-energy barriers in mbco rebinding
-
Banushkina, P.; Meuwly, M. Free-Energy Barriers in MbCO Rebinding. J. Phys. Chem. B 2005, 109, 16911-16917.
-
(2005)
J. Phys. Chem. B
, vol.109
, pp. 16911-16917
-
-
Banushkina, P.1
Meuwly, M.2
-
26
-
-
23244457434
-
Molecular dynamics simulation of sperm whale myoglobin: Effects of mutations and trapped co on the structure and dynamics of cavities
-
Bossa, C.; Amadei, A.; Daidone, I.; Anselmi, M.; Vallone, B.; Brunori, M.; Di Nola, A. Molecular Dynamics Simulation of Sperm Whale Myoglobin: Effects of Mutations and Trapped CO on the Structure and Dynamics of Cavities. Biophys. J. 2005, 89, 465-474.
-
(2005)
Biophys. J.
, vol.89
, pp. 465-474
-
-
Bossa, C.1
Amadei, A.2
Daidone, I.3
Anselmi, M.4
Vallone, B.5
Brunori, M.6
Di Nola, A.7
-
27
-
-
23844539617
-
Ligand migration pathway and protein dynamics in myoglobin: A time-resolved crystallographic study on l29w mbco
-
Schmidt, M.; Nienhaus, K.; Pahl, R.; Krasselt, A.; Anderson, S.; Parak, F.; Nienhaus, G. U.; Srajer, V. Ligand Migration Pathway and Protein Dynamics in Myoglobin: A Time-Resolved Crystallographic Study on L29W MbCO. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 11704-11709.
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 11704-11709
-
-
Schmidt, M.1
Nienhaus, K.2
Pahl, R.3
Krasselt, A.4
Anderson, S.5
Parak, F.6
Nienhaus, G.U.7
Srajer, V.8
-
28
-
-
17444363446
-
Molecular dynamics simulation of entropy driven ligand escape process in heme pocket
-
Sheu, S.-Y. Molecular Dynamics Simulation of Entropy Driven Ligand Escape Process in Heme Pocket. J. Chem. Phys. 2005, 122, 104905.
-
(2005)
J Chem. Phys.
, vol.122
, pp. 104905
-
-
Sheu, S.-Y.1
-
29
-
-
33748460871
-
Imaging the migration pathways for o2 co no and xe inside myoglobin
-
Cohen, J.; Arkhipov, A.; Braun, R.; Schulten, K. Imaging the Migration Pathways for O2, CO, NO, and Xe Inside Myoglobin. Biophys. J. 2006, 91, 1844-1857.
-
(2006)
Biophys. J.
, vol.91
, pp. 1844-1857
-
-
Cohen, J.1
Arkhipov, A.2
Braun, R.3
Schulten, K.4
-
30
-
-
31944445783
-
Water and ligand entry in myoglobin: Assessing the speed and extent of heme pocket hydration after co photodissociation
-
Goldbeck, R. A.; Bhaskaran, S.; Ortega, C.; Mendoza, J. L.; Olson, J. S.; Soman, J.; Kliger, D. S.; Esquerra, R. M. Water and Ligand Entry in Myoglobin: Assessing the Speed and Extent of Heme Pocket Hydration after CO Photodissociation. Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 1254-1259.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 1254-1259
-
-
Goldbeck, R.A.1
Bhaskaran, S.2
Ortega, C.3
Mendoza, J.L.4
Olson, J.S.5
Soman, J.6
Kliger, D.S.7
Esquerra, R.8
-
31
-
-
44849137851
-
The kinetics of ligand migration in crystallized myoglobin as revealed by molecular dynamics simulations
-
Anselmi, M.; Di Nola, A.; Amadei, A. The Kinetics of Ligand Migration in Crystallized Myoglobin as Revealed by Molecular Dynamics Simulations. Biophys. J. 2008, 94, 4277-4281.
-
(2008)
Biophys. J.
, vol.94
, pp. 4277-4281
-
-
Anselmi, M.1
Di Nola, A.2
Amadei, A.3
-
32
-
-
42449132544
-
Co escape from myoglobin with metadynamics simulations
-
Ceccarelli, M.; Anedda, R.; Casu, M.; Ruggerone, P. CO Escape from Myoglobin with Metadynamics Simulations. Proteins 2008, 71, 1231-1236.
-
(2008)
Proteins
, vol.71
, pp. 1231-1236
-
-
Ceccarelli, M.1
Anedda, R.2
Casu, M.3
Ruggerone, P.4
-
33
-
-
44949204485
-
Toward quantitative simulations of carbon monoxide escape pathways in myoglobin
-
Elber, R.; Gibson, Q. H. Toward Quantitative Simulations of Carbon Monoxide Escape Pathways in Myoglobin. J. Phys. Chem. B 2008, 112, 6147-6154.
-
(2008)
J. Phys. Chem. B
, vol.112
, pp. 6147-6154
-
-
Elber, R.1
Gibson, Q.H.2
-
34
-
-
46649112176
-
The ph dependence of heme pocket hydration and ligand rebinding kinetics in photodissociated carbonmonoxymyoglobin
-
Esquerra, R. M.; Jensen, R. A.; Bhaskaran, S.; Pillsbury, M. L.; Mendoza, J. L.; Lintner, B. W.; Kliger, D. S.; Goldbeck, R. A. The pH Dependence of Heme Pocket Hydration and Ligand Rebinding Kinetics in Photodissociated Carbonmonoxymyoglobin. J. Biol. Chem. 2008, 283, 14165-14175.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 14165-14175
-
-
Esquerra, R.M.1
Jensen, R.A.2
Bhaskaran, S.3
Pillsbury, M.L.4
Mendoza, J.L.5
Lintner, B.W.6
Kliger, D.S.7
Goldbeck, R.A.8
-
35
-
-
48249120004
-
Atomic level computational identification of ligand migration pathways between solvent and binding site in myoglobin
-
Ruscio, J. Z.; Kumar, D.; Shukla, M.; Prisant, M. G.; Murali, T. M.; Onufriev, A. V. Atomic Level Computational Identification of Ligand Migration Pathways between Solvent and Binding Site in Myoglobin. Proc. Natl. Acad. Sci. U.S.A. 2008, 105, 9204-9209.
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 9204-9209
-
-
Ruscio, J.Z.1
Kumar, D.2
Shukla, M.3
Prisant, M.G.4
Murali, T.M.5
Onufriev, A.V.6
-
36
-
-
67849094576
-
Theoretical study of co escaping pathway in myoglobin with the 3d-rism theory
-
Kiyota, Y.; Hiraoka, R.; Yoshida, N.; Maruyama, Y.; Imai, T.; Hirata, F. Theoretical Study of CO Escaping Pathway in Myoglobin with the 3D-RISM Theory. J. Am. Chem. Soc. 2009, 131, 3852-3853.
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 3852-3853
-
-
Kiyota, Y.1
Hiraoka, R.2
Yoshida, N.3
Maruyama, Y.4
Imai, T.5
Hirata, F.6
-
37
-
-
69049084556
-
Breathing motions of a respiratory protein revealed by molecular dynamics simulations
-
Scorciapino, M. A.; Robertazzi, A.; Casu, M.; Ruggerone, P.; Ceccarelli, M. Breathing Motions of a Respiratory Protein Revealed by Molecular Dynamics Simulations. J. Am. Chem. Soc. 2009, 131, 11825-11832.
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 11825-11832
-
-
Scorciapino, M.A.1
Robertazzi, A.2
Casu, M.3
Ruggerone, P.4
Ceccarelli, M.5
-
38
-
-
62449307954
-
Visualizing breathing motion of internal cavities in concert with ligand migration in myoglobin
-
Tomita, A.; Sato, T.; Ichiyanagi, K.; Nozawa, S.; Ichikawa, H.; Chollet, M.; Kawai, F.; Park, S.-Y.; Tsuduki, T.; Yamato, T.; Koshihara, S.; Adachi, S. Visualizing Breathing Motion of Internal Cavities in Concert with Ligand Migration in Myoglobin. Proc. Natl. Acad. Sci. U.S.A. 2009, 106, 2612-2616.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 2612-2616
-
-
Tomita, A.1
Sato, T.2
Ichiyanagi, K.3
Nozawa, S.4
Ichikawa, H.5
Chollet, M.6
Kawai, F.7
Park, S.-Y.8
Tsuduki, T.9
Yamato, T.10
Koshihara, S.11
Adachi, S.12
-
39
-
-
77952182778
-
Protein structural dynamics in solution unveiled via 100-ps time-resolved x-ray scattering
-
Cho, H. S.; Dashdorj, N.; Schotte, F.; Graber, T.; Henning, R.; Anfinrud, P. Protein Structural Dynamics in Solution Unveiled via 100-ps Time-Resolved X-ray Scattering. Proc. Natl. Acad. Sci. U.S.A. 2010, 107, 7281-7286.
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 7281-7286
-
-
Cho, H.S.1
Dashdorj, N.2
Schotte, F.3
Graber, T.4
Henning, R.5
Anfinrud, P.6
-
40
-
-
77951298113
-
Ligand diffusion in globins: Simulations versus experiment
-
Elber, R. Ligand Diffusion in Globins: Simulations versus Experiment. Curr. Opin. Struct. Biol. 2010, 20, 62-167.
-
(2010)
Curr. Opin. Struct. Biol.
, vol.20
, pp. 62-167
-
-
Elber, R.1
-
41
-
-
77957994187
-
Kinetic spectroscopy of heme hydration and ligand binding in myoglobin and isolated hemoglobin chains: An optical window into heme pocket water dynamics
-
Esquerra, R. M.; Lopez-Pena, I.; Tipgunlakant, P.; Birukou, I.; Nguyen, R. L.; Soma, J.; Olson, J. S.; Kliger, D. S.; Goldbeck, R. A. Kinetic Spectroscopy of Heme Hydration and Ligand Binding in Myoglobin and Isolated Hemoglobin Chains: An Optical Window into Heme Pocket Water Dynamics. Phys. Chem. Chem. Phys. 2010, 12, 10270-10278.
-
(2010)
Phys. Chem. Chem. Phys.
, vol.12
, pp. 10270-10278
-
-
Esquerra, R.M.1
Lopez-Pena, I.2
Tipgunlakant, P.3
Birukou, I.4
Nguyen, R.5
Soma, J.6
Olson, J.7
Kliger, D.8
Goldbeck, R.9
-
42
-
-
76149087182
-
Mapping the network of pathways of co diffusion in myoglobin
-
Maragliano, L.; Cottone, G.; Ciccotti, G.; Vanden-Eijnden, E. Mapping the Network of Pathways of CO Diffusion in Myoglobin. J. Am. Chem. Soc. 2010, 132, 1010-1017.
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 1010-1017
-
-
Maragliano, L.1
Cottone, G.2
Ciccotti, G.3
Vanden-Eijnden, E.4
-
43
-
-
77951630349
-
Protein collective motions coupled to ligand migration in myoglobin
-
Nishihara, Y.; Kato, S.; Hayashi, S. Protein Collective Motions Coupled to Ligand Migration in Myoglobin. Biophys. J. 2010, 98, 1649-1657.
-
(2010)
Biophys. J.
, vol.98
, pp. 1649-1657
-
-
Nishihara, Y.1
Kato, S.2
Hayashi, S.3
-
44
-
-
77950797324
-
Heme proteins: The role of solvent in the dynamics of gates and portals
-
Scorciapino, M. A.; Robertazzi, A.; Casu, M.; Ruggerone, P.; Ceccarelli, M. Heme Proteins: The Role of Solvent in the Dynamics of Gates and Portals. J. Am. Chem. Soc. 2010, 132, 5156-5163.
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 5156-5163
-
-
Scorciapino, M.A.1
Robertazzi, A.2
Casu, M.3
Ruggerone, P.4
Ceccarelli, M.5
-
45
-
-
77957120065
-
Structural dynamics of clamshell rotation during the incipient relaxation process of photodissociated carbonmonoxy myoglobin: Statistical analysis by the perturbation ensemble method
-
Takayanagi, M.; Iwahashi, C.; Nagaoka, M. Structural Dynamics of Clamshell Rotation during the Incipient Relaxation Process of Photodissociated Carbonmonoxy Myoglobin: Statistical Analysis by the Perturbation Ensemble Method. J. Phys. Chem. B 2010, 114, 12340-12348.
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 12340-12348
-
-
Takayanagi, M.1
Iwahashi, C.2
Nagaoka, M.3
-
46
-
-
79960100263
-
Efficient mapping of ligand migration channel networks in dynamic proteins
-
Lin, T.-L.; Song, G. Efficient Mapping of Ligand Migration Channel Networks in Dynamic Proteins. Proteins 2011, 79, 2475-2490.
-
(2011)
Proteins
, vol.79
, pp. 2475-2490
-
-
Lin, T.-L.1
Song, G.2
-
47
-
-
84856013906
-
Quantifying the importance of protein conformation on ligand migration in myoglobin
-
Plattner, N.; Meuwly, M. Quantifying the Importance of Protein Conformation on Ligand Migration in Myoglobin. Biophys. J. 2012, 102, 333-341.
-
(2012)
Biophys. J.
, vol.102
, pp. 333-341
-
-
Plattner, N.1
Meuwly, M.2
-
48
-
-
84866933231
-
Determination of ligand pathways in globins. Apolar tunnels versus polar gates
-
Salter, M. D.; Blouin, G. C.; Soman, J.; Singleton, E. W.; Dewilde, S.; Moens, L.; Pesce, A.; Nardini, M.; Bolognesi, M.; Olson, J. S. Determination of Ligand Pathways in Globins. Apolar Tunnels versus Polar Gates. J. Biol. Chem. 2012, 287, 33163-33178.
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 33163-33178
-
-
Salter, M.D.1
Blouin, G.C.2
Soman, J.3
Singleton, E.W.4
Dewilde, S.5
Moens, L.6
Pesce, A.7
Nardini, M.8
Bolognesi, M.9
Olson, J.S.10
-
49
-
-
84860470953
-
Ligand migration in myoglobin: A combined study of computer simulation and x-ray crystallography
-
Tsuduki, T.; Tomita, A.; Koshihara, S.; Adachi, S.; Yamato, T. Ligand Migration in Myoglobin: A Combined Study of Computer Simulation and X-ray Crystallography. J. Chem. Phys. 2012, 136, 165101.
-
(2012)
J Chem. Phys.
, vol.136
, pp. 165101
-
-
Tsuduki, T.1
Tomita, A.2
Koshihara, S.3
Adachi, S.4
Yamato, T.5
-
50
-
-
84874770897
-
Hydrophobic effect drives oxygen uptake in myoglobin via histidine e7
-
Boechi, L.; Arrar, M.; Martí, M. A.; Olson, J. S.; Roitberg, A. E.; Estrin, D. A. Hydrophobic Effect Drives Oxygen Uptake in Myoglobin via Histidine E7. J. Biol. Chem. 2013, 288, 6754-6762.
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 6754-6762
-
-
Boechi, L.1
Arrar, M.2
Martí, M.A.3
Olson, J.S.4
Roitberg, A.E.5
Estrin, D.A.6
-
51
-
-
84873665906
-
A computational study of water and co migration sites and channels inside myoglobin
-
Lapelosa, M.; Abrams, C. F. A Computational Study of Water and CO Migration Sites and Channels Inside Myoglobin. J. Chem. Theory Comput. 2013, 9, 1265-1271.
-
(2013)
J. Chem. Theory Comput.
, vol.9
, pp. 1265-1271
-
-
Lapelosa, M.1
Abrams, C.2
-
52
-
-
0021766921
-
Cavities in proteins: Structure of a metmyoglobin-xenon complex solved to 1.9 å
-
Tilton, R. F., Jr.; Kuntz, I. D., Jr.; Petsko, G. A. Cavities in Proteins: Structure of a Metmyoglobin-Xenon Complex Solved to 1.9 Å. Biochemistry 1984, 23, 2849-2857.
-
(1984)
Biochemistry
, vol.23
, pp. 2849-2857
-
-
Tilton Jr., R.F.1
Kuntz Jr., I.D.2
Petsko, G.A.3
-
53
-
-
0029589533
-
Detection of internal cavities in globular proteins
-
Hubbard, S. J.; Argos, P. Detection of Internal Cavities in Globular Proteins. Protein Eng. 1995, 8, 1011-1015.
-
(1995)
Protein Eng.
, vol.8
, pp. 1011-1015
-
-
Hubbard, S.J.1
Argos, P.2
-
54
-
-
43049122273
-
Water in nonpolar confinement: From nanotubes to proteins and beyond
-
Rasaiah, J. C.; Garde, S.; Hummer, G. Water in Nonpolar Confinement: From Nanotubes to Proteins and Beyond. Annu. Rev. Chem. Phys. 2008, 59, 713-740.
-
(2008)
Annu. Rev Chem. Phys.
, vol.59
, pp. 713-740
-
-
Rasaiah, J.C.1
Garde, S.2
Hummer, G.3
-
55
-
-
77956305291
-
Free energy entropy, and enthalpy of a water molecule in various protein environments
-
Yu, H.; Rick, S. W. Free Energy, Entropy, and Enthalpy of a Water Molecule in Various Protein Environments. J. Phys. Chem. B 2010, 114, 11552-11560.
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 11552-11560
-
-
Yu, H.1
Rick, S.W.2
-
56
-
-
21344477561
-
Nmr relaxometric studies of water accessibility to haem cavity in horse heart and sperm whale myoglobin
-
Aime, S.; Ascenzi, P.; Fasano, M.; Paoletti, S. NMR Relaxometric Studies of Water Accessibility to Haem Cavity in Horse Heart and Sperm Whale Myoglobin. Magn. Reson. Chem. 1993, 31, S85-S89.
-
(1993)
Magn. Reson. Chem.
, vol.31
-
-
Aime, S.1
Ascenzi, P.2
Fasano, M.3
Paoletti, S.4
-
57
-
-
12044251750
-
Environment of the heme in myoglobins. Nmrd and epr spectroscopy of val68x (x = asn, asp, and glu) mutants of human myoglobin
-
Zewert, T. E.; Gray, H. B.; Bertini, I. Environment of the Heme in Myoglobins. NMRD and EPR Spectroscopy of Val68X (X = Asn, Asp, and Glu) Mutants of Human Myoglobin. J. Am. Chem. Soc. 1994, 116, 1169-1173.
-
(1994)
J. Am. Chem. Soc.
, vol.116
, pp. 1169-1173
-
-
Zewert, T.E.1
Gray, H.B.2
Bertini, I.3
-
58
-
-
0030325741
-
Protein hydration dynamics in aqueous solution
-
Denisov, V. P.; Halle, B. Protein Hydration Dynamics in Aqueous Solution. Faraday Discuss. 1996, 103, 227-244.
-
(1996)
Faraday Discuss.
, vol.103
, pp. 227-244
-
-
Denisov, V.P.1
Halle, B.2
-
59
-
-
0000202632
-
Multinuclear relaxation dispersion studies of protein hydration
-
Krishna, N. R., Berliner, L. J., Eds.; Kluwer/Plenum: New York
-
Halle, B.; Denisov, V. P.; Venu, K. Multinuclear Relaxation Dispersion Studies of Protein Hydration. In Biological Magnetic Resonance; Krishna, N. R., Berliner, L. J., Eds.; Kluwer/Plenum: New York, 1999; Vol. 17, pp 419-484.
-
(1999)
Biological Magnetic Resonance
, vol.17
, pp. 419-484
-
-
Halle, B.1
Denisov, V.P.2
Venu, K.3
-
60
-
-
84889854751
-
Protein conformational transitions as seen from the solvent: Magnetic relaxation dispersion studies of water, co-solvent, and denaturant interactions with nonnative proteins
-
Buchner, J., Kiefhaber, T., Eds.; Wiley-VCH: Weinheim, Germany, I, Chapter 8
-
Halle, B.; Denisov, V. P.; Modig, K.; Davidovic, M. Protein Conformational Transitions as Seen from the Solvent: Magnetic Relaxation Dispersion Studies of Water, Co-solvent, and Denaturant Interactions with Nonnative Proteins. In Protein Foldidng Handbook; Buchner, J., Kiefhaber, T., Eds.; Wiley-VCH: Weinheim, Germany, 2005; Vol. I, Chapter 8, pp 201-246.
-
(2005)
Protein Foldidng Handbook
, pp. 201-246
-
-
Halle, B.1
Denisov, V.P.2
Modig, K.3
Davidovic, M.4
-
61
-
-
38949183943
-
Nanosecond to microsecond protein dynamics probed by magnetic relaxation dispersion of buried water molecules
-
Persson, E.; Halle, B. Nanosecond to Microsecond Protein Dynamics Probed by Magnetic Relaxation Dispersion of Buried Water Molecules. J. Am. Chem. Soc. 2008, 130, 1774-1787.
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 1774-1787
-
-
Persson, E.1
Halle, B.2
-
62
-
-
84864829076
-
Nuclear magnetic relaxation induced by exchange-mediated orientational randomization: Longitudinal relaxation dispersion for spin i = 1
-
Nilsson, T.; Halle, B. Nuclear Magnetic Relaxation Induced by Exchange-Mediated Orientational Randomization: Longitudinal Relaxation Dispersion for Spin I = 1. J. Chem. Phys. 2012, 137, 54503.
-
(2012)
J Chem. Phys.
, vol.137
, pp. 54503
-
-
Nilsson, T.1
Halle, B.2
-
64
-
-
8444230519
-
Glutaraldehyde: Behavior in aqueous solution, reaction with proteins, and application to enzyme crosslinking
-
Migneault, I.; Dartiguenave, C.; Bertrand, M. J.; Waldron, K. C. Glutaraldehyde: Behavior in Aqueous Solution, Reaction with Proteins, and Application to Enzyme Crosslinking. Biotechniques 2004, 37, 790-802.
-
(2004)
Biotechniques
, vol.37
, pp. 790-802
-
-
Migneault, I.1
Dartiguenave, C.2
Bertrand, M.J.3
Waldron, K.4
-
65
-
-
0001591464
-
Use of the glass electrode in deuterium oxide and the relation between the standardized pd (pad) scale and the operational ph in heavy water
-
Covington, A. K.; Paabo, M.; Robinson, R. A.; Bates, R. G. Use of the Glass Electrode in Deuterium Oxide and the Relation between the Standardized pD (paD) Scale and the Operational pH in Heavy Water. Anal. Chem. 1968, 40, 700-706.
-
(1968)
Anal. Chem.
, vol.40
, pp. 700-706
-
-
Covington, A.K.1
Paabo, M.2
Robinson, R.A.3
Bates, R.G.4
-
66
-
-
13444297302
-
Technical aspects of fast field cycling
-
Ferrante, G.; Sykora, S. Technical Aspects of Fast Field Cycling. Adv. Inorg. Chem. 2005, 57, 405-470.
-
(2005)
Adv. Inorg. Chem.
, vol.57
, pp. 405-470
-
-
Ferrante, G.1
Sykora, S.2
-
67
-
-
55549086517
-
Dynamics at the protein-water interface from 17o spin relaxation in deeply supercooled solutions
-
Mattea, C.; Qvist, J.; Halle, B. Dynamics at the Protein-Water Interface from 17O Spin Relaxation in Deeply Supercooled Solutions. Biophys. J. 2008, 95, 2951-2963.
-
(2008)
Biophys. J.
, vol.95
, pp. 2951-2963
-
-
Mattea, C.1
Qvist, J.2
Halle, B.3
-
68
-
-
72449130451
-
The physical basis of model-free analysis of nmr relaxation data from proteins and complex fluids
-
Halle, B. The Physical Basis of Model-Free Analysis of NMR Relaxation Data from Proteins and Complex Fluids. J. Chem. Phys. 2009, 131, 224507.
-
(2009)
J Chem. Phys.
, vol.131
, pp. 224507
-
-
Halle, B.1
-
69
-
-
84878943828
-
Transient access to the protein interior: Simulation versus nmr
-
Persson, F.; Halle, B. Transient Access to the Protein Interior: Simulation versus NMR. J. Am. Chem. Soc. 2013, 135, 8735-8748.
-
(2013)
J. Am. Chem. Soc.
, vol.135
, pp. 8735-8748
-
-
Persson, F.1
Halle, B.2
-
70
-
-
80052470762
-
Prediction of hydrodynamic and other solution properties of rigid proteins from atomic-and residue-level models
-
Ortega, A.; Amoros, D.; García de la Torre, J. Prediction of Hydrodynamic and Other Solution Properties of Rigid Proteins from Atomic-and Residue-Level Models. Biophys. J. 2011, 101, 892-898.
-
(2011)
Biophys. J.
, vol.101
, pp. 892-898
-
-
Ortega, A.1
Amoros, D.2
García De La Torre, J.3
-
71
-
-
0142123115
-
Biomolecular hydration: From water dynamics to hydrodynamics
-
Halle, B.; Davidovic, M. Biomolecular Hydration: From Water Dynamics to Hydrodynamics. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 12135-12140.
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 12135-12140
-
-
Halle, B.1
Davidovic, M.2
-
72
-
-
0030782485
-
Myoglobin and hemoglobin rotational diffusion in the cell
-
Wang, D.; Kreutzer, U.; Chung, Y.; Jue, T. Myoglobin and Hemoglobin Rotational Diffusion in the Cell. Biophys. J. 1997, 73, 2764-2770.
-
(1997)
Biophys. J.
, vol.73
, pp. 2764-2770
-
-
Wang, D.1
Kreutzer, U.2
Chung, Y.3
Jue, T.4
-
73
-
-
0002550755
-
Nearly exponential quadrupolar relaxation. A perturbation treatment
-
Halle, B.; Wennersrom, H. Nearly Exponential Quadrupolar Relaxation. A Perturbation Treatment. J. Magn. Reson. 1981, 44, 89-100.
-
(1981)
J. Magn. Reson.
, vol.44
, pp. 89-100
-
-
Halle, B.1
Wennersrom, H.2
-
74
-
-
0030303844
-
An interior trust region approach for nonlinear minimization subject to bounds
-
Coleman, T. F.; Li, Y. An Interior Trust Region Approach for Nonlinear Minimization Subject to Bounds. SIAM J. Optim. 1996, 6, 418-445.
-
(1996)
SIAM J. Optim.
, vol.6
, pp. 418-445
-
-
Coleman, T.F.1
Li, Y.2
-
75
-
-
0028937274
-
Hydrogen exchange and protein hydration: The deuteron spin relaxation dispersions of bovine pancreatic trypsin inhibitor and ubiquitin
-
Denisov, V. P.; Halle, B. Hydrogen Exchange and Protein Hydration: The Deuteron Spin Relaxation Dispersions of Bovine Pancreatic Trypsin Inhibitor and Ubiquitin. J. Mol. Biol. 1995, 245, 698-709.
-
(1995)
J. Mol. Biol.
, vol.245
, pp. 698-709
-
-
Denisov, V.P.1
Halle, B.2
-
76
-
-
33751306108
-
Hydrogen exchange and hydration dynamics in gelatin gels
-
Vaca Chavez, F.; Hellstrand, E.; Halle, B. Hydrogen Exchange and Hydration Dynamics in Gelatin Gels. J. Phys. Chem. B 2006, 110, 21551-21559.
-
(2006)
J. Phys. Chem. B
, vol.110
, pp. 21551-21559
-
-
Chavez, V.F.1
Hellstrand, E.2
Halle, B.3
-
77
-
-
0030919951
-
Water 1h magnetic relaxation dispersion in protein solutions. A quantitative assessment of internal hydration, proton exchange, and cross-relaxation
-
Venu, K.; Denisov, V. P.; Halle, B. Water 1H Magnetic Relaxation Dispersion in Protein Solutions. A Quantitative Assessment of Internal Hydration, Proton Exchange, and Cross-Relaxation. J. Am. Chem. Soc. 1997, 119, 3122-3134.
-
(1997)
J. Am. Chem. Soc.
, vol.119
, pp. 3122-3134
-
-
Venu, K.1
Denisov, V.P.2
Halle, B.3
-
78
-
-
33745727912
-
Molecular basis of water proton relaxation in gels and tissue
-
Vaca Chavez, F.; Halle, B. Molecular Basis of Water Proton Relaxation in Gels and Tissue. Magn. Reson. Med. 2006, 56, 73-81.
-
(2006)
Magn. Reson. Med.
, vol.56
, pp. 73-81
-
-
Chavez, V.F.1
Halle, B.2
-
79
-
-
0030051552
-
Proton exchange rates from amino acid side chains implications for image contrast
-
Liepinsh, E.; Otting, G. Proton Exchange Rates from Amino Acid Side Chains Implications for Image Contrast. Magn. Reson. Med. 1996, 35, 30-42.
-
(1996)
Magn. Reson. Med.
, vol.35
, pp. 30-42
-
-
Liepinsh, E.1
Otting, G.2
-
80
-
-
0027219184
-
Electrostatic calculations of side-chain pka values in myoglobin and comparison with nmr data for histidines
-
Bashford, D.; Case, D. A.; Dalvit, C.; Tennant, L.; Wright, P. E. Electrostatic Calculations of Side-Chain pKa Values in Myoglobin and Comparison with NMR Data for Histidines. Biochemistry 1993, 32, 8045-8056.
-
(1993)
Biochemistry
, vol.32
, pp. 8045-8056
-
-
Bashford, D.1
Case, D.A.2
Dalvit, C.3
Tennant, L.4
Wright, P.E.5
-
81
-
-
0030865458
-
Temperature dependence of histidine ionization constants in myoglobin
-
Bhattacharya, S.; Lecomte, J. T. J. Temperature Dependence of Histidine Ionization Constants in Myoglobin. Biophys. J. 1997, 73, 3241-3256.
-
(1997)
Biophys. J.
, vol.73
, pp. 3241-3256
-
-
Bhattacharya, S.1
Lecomte, J.T.J.2
-
82
-
-
0033862774
-
Salt effects on ionization equilibria of histidines in myoglobin
-
Kao, Y.-H.; Fitch, C. A.; Bhattacharya, S.; Sarkisian, C. J.; Lecomte, J. T. J.; García-Moreno, E., B. Salt Effects on Ionization Equilibria of Histidines in Myoglobin. Biophys. J. 2000, 79, 1637-1654.
-
(2000)
Biophys. J.
, vol.79
, pp. 1637-1654
-
-
Kao, Y.-H.1
Fitch, C.A.2
Bhattacharya, S.3
Sarkisian, C.J.4
Lecomte, J.T.J.5
García-Moreno, E.B.6
-
83
-
-
0035112206
-
Calculated ph-dependent population and protonation of carbon-monoxy-myoglobin conformers
-
Rabenstein, B.; Knapp, E.-W. Calculated pH-Dependent Population and Protonation of Carbon-Monoxy-Myoglobin Conformers. Biophys. J. 2001, 80, 1141-1150.
-
(2001)
Biophys. J.
, vol.80
, pp. 1141-1150
-
-
Rabenstein, B.1
Knapp, E.-W.2
-
84
-
-
0010279374
-
Intramolecular proton exchange in aqueous histamine. An nmr method for resolving the ammonium and imidazole proton-exchange rates
-
Ralph, E. K.; Atherton, J. N. Intramolecular Proton Exchange in Aqueous Histamine. An NMR Method for Resolving the Ammonium and Imidazole Proton-Exchange Rates. J. Am. Chem. Soc. 1980, 102, 6184-6185.
-
(1980)
J. Am. Chem. Soc.
, vol.102
, pp. 6184-6185
-
-
Ralph, E.K.1
Atherton, J.N.2
-
85
-
-
33846093109
-
Deuterium quadrupolar tensors of lhistidine hydrochloride monohydrate-d7
-
Zhao, X.; Harbison, G. S. Deuterium Quadrupolar Tensors of LHistidine Hydrochloride Monohydrate-d7. J. Phys. Chem. B 2006, 110, 25059-25065.
-
(2006)
J. Phys. Chem. B
, vol.110
, pp. 25059-25065
-
-
Zhao, X.1
Harbison, G.S.2
-
86
-
-
4344602172
-
Protein hydration dynamics in solution: A critical survey
-
Halle, B. Protein Hydration Dynamics in Solution: A Critical Survey. Philos. Trans. R. Soc. London, Ser. B 2004, 359, 1207-1224.
-
(2004)
Philos. Trans. R. Soc. London, Ser. B
, vol.359
, pp. 1207-1224
-
-
Halle, B.1
-
87
-
-
0014966029
-
The thermodynamics of absorption of xenon by myoglobin
-
Ewing, G. J.; Maestas, S. The Thermodynamics of Absorption of Xenon by Myoglobin. J. Phys. Chem. 1970, 74, 2341-2344.
-
(1970)
J. Phys. Chem.
, vol.74
, pp. 2341-2344
-
-
Ewing, G.J.1
Maestas, S.2
-
88
-
-
77957937199
-
Atomic-level characterization of the structural dynamics of proteins
-
Shaw, D. E.; Maragakis, P.; Lindorff-Larsen, K.; Piana, S.; Dror, R. O.; Eastwood, M. P.; Bank, J. A.; Jumper, J. M.; Salmon, J. K.; Shan, Y.; Wriggers, W. Atomic-Level Characterization of the Structural Dynamics of Proteins. Science 2010, 330, 341-346.
-
(2010)
Science
, vol.330
, pp. 341-346
-
-
Shaw, D.E.1
Maragakis, P.2
Lindorff-Larsen, K.3
Piana, S.4
Dror, R.O.5
Eastwood, M.P.6
Bank, J.A.7
Jumper, J.M.8
Salmon, J.K.9
Shan, Y.10
Wriggers, W.11
|