메뉴 건너뛰기




Volumn 136, Issue 16, 2012, Pages

Ligand migration in myoglobin: A combined study of computer simulation and x-ray crystallography

Author keywords

[No Author keywords available]

Indexed keywords

3-D SCALAR; CONFORMATIONAL ENSEMBLE; LIGAND MOLECULES; LIGAND-PROTEIN INTERACTION; MOLECULAR DYNAMICS SIMULATIONS; MULTI-DISCIPLINARY APPROACH; POTENTIAL OF MEAN FORCE; PROTEIN CONFORMATION; PROTEIN MATRIX; STATISTICAL ENSEMBLES; STRUCTURAL CHANGE; THERMAL AVERAGES; X-RAY STUDIES;

EID: 84860470953     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.4704586     Document Type: Article
Times cited : (6)

References (81)
  • 2
    • 4444253708 scopus 로고    scopus 로고
    • 10.1529/biophysj.104.042929
    • N. Agmon, Biophys. J. 87 (3), 1537-1543 (2004). 10.1529/biophysj.104. 042929
    • (2004) Biophys. J. , vol.87 , Issue.3 , pp. 1537-1543
    • Agmon, N.1
  • 3
    • 44849137851 scopus 로고    scopus 로고
    • 10.1529/biophysj.107.124529
    • M. Anselmi, A. Di Nola, and A. Amadei, Biophys. J. 94 (11), 4277-4281 (2008). 10.1529/biophysj.107.124529
    • (2008) Biophys. J. , vol.94 , Issue.11 , pp. 4277-4281
    • Anselmi, M.1    Di Nola, A.2    Amadei, A.3
  • 7
    • 0018791973 scopus 로고
    • 10.1016/0022-2836(79)90265-1
    • D. A. Case and M. Karplus, J. Mol. Biol. 132 (3), 343-368 (1979). 10.1016/0022-2836(79)90265-1
    • (1979) J. Mol. Biol. , vol.132 , Issue.3 , pp. 343-368
    • Case, D.A.1    Karplus, M.2
  • 11
    • 77951298113 scopus 로고    scopus 로고
    • 10.1016/j.sbi.2010.01.002
    • R. Elber, Curr. Opin. Struct. Biol. 20 (2), 162-167 (2010). 10.1016/j.sbi.2010.01.002
    • (2010) Curr. Opin. Struct. Biol. , vol.20 , Issue.2 , pp. 162-167
    • Elber, R.1
  • 12
    • 0025600834 scopus 로고
    • 10.1021/ja00181a020
    • R. Elber and M. Karplus, J. Am. Chem. Soc. 112 (25), 9161-9175 (1990). 10.1021/ja00181a020
    • (1990) J. Am. Chem. Soc. , vol.112 , Issue.25 , pp. 9161-9175
    • Elber, R.1    Karplus, M.2
  • 13
    • 0029011910 scopus 로고
    • 10.1021/bi00023a007
    • J. D. Hirst and C. L. Brooks, Biochemistry 34 (23), 7614-7621 (1995). 10.1021/bi00023a007
    • (1995) Biochemistry , vol.34 , Issue.23 , pp. 7614-7621
    • Hirst, J.D.1    Brooks, C.L.2
  • 14
  • 17
    • 0031880931 scopus 로고    scopus 로고
    • 10.1016/S0006-3495(98)74004-4
    • J. Meller and R. Elber, Biophys. J. 74 (2), 789-802 (1998). 10.1016/S0006-3495(98)74004-4
    • (1998) Biophys. J. , vol.74 , Issue.2 , pp. 789-802
    • Meller, J.1    Elber, R.2
  • 18
  • 19
    • 0029894282 scopus 로고    scopus 로고
    • 10.1074/jbc.271.30.17593
    • J. S. Olson and G. N. Phillips, J. Biol. Chem. 271 (30), 17593-17596 (1996). 10.1074/jbc.271.30.17593
    • (1996) J. Biol. Chem. , vol.271 , Issue.30 , pp. 17593-17596
    • Olson, J.S.1    Phillips, G.N.2
  • 23
    • 0030768765 scopus 로고    scopus 로고
    • 10.1021/bi970719s
    • E. E. Scott and Q. H. Gibson, Biochemistry 36 (39), 11909-11917 (1997). 10.1021/bi970719s
    • (1997) Biochemistry , vol.36 , Issue.39 , pp. 11909-11917
    • Scott, E.E.1    Gibson, Q.H.2
  • 30
    • 36549007107 scopus 로고    scopus 로고
    • 10.1529/biophysj.107.108712
    • J. Cohen and K. Schulten, Biophys. J. 93 (10), 3591-3600 (2007). 10.1529/biophysj.107.108712
    • (2007) Biophys. J. , vol.93 , Issue.10 , pp. 3591-3600
    • Cohen, J.1    Schulten, K.2
  • 33
    • 5244325378 scopus 로고
    • 10.1063/1.462993
    • R. Zwanzig, J. Chem. Phys. 97 (5), 3587-3589 (1992). 10.1063/1.462993
    • (1992) J. Chem. Phys. , vol.97 , Issue.5 , pp. 3587-3589
    • Zwanzig, R.1
  • 34
    • 5644229003 scopus 로고    scopus 로고
    • 10.1063/1.471346
    • N. Eizenberg and J. Klafter, J. Chem. Phys. 104 (17), 6796-6806 (1996). 10.1063/1.471346
    • (1996) J. Chem. Phys. , vol.104 , Issue.17 , pp. 6796-6806
    • Eizenberg, N.1    Klafter, J.2
  • 35
    • 0032000001 scopus 로고    scopus 로고
    • 10.1016/S0378-4371(97)00502-5
    • N. Eizenberg and J. Klafter, Physica A 249 (1-4), 424-429 (1998). 10.1016/S0378-4371(97)00502-5
    • (1998) Physica A , vol.249 , Issue.14 , pp. 424-429
    • Eizenberg, N.1    Klafter, J.2
  • 36
    • 0034702614 scopus 로고    scopus 로고
    • 10.1063/1.1287335
    • K. Seki and M. Tachiya, J. Chem. Phys. 113 (8), 3441-3446 (2000). 10.1063/1.1287335
    • (2000) J. Chem. Phys. , vol.113 , Issue.8 , pp. 3441-3446
    • Seki, K.1    Tachiya, M.2
  • 37
    • 0000883260 scopus 로고    scopus 로고
    • 10.1063/1.480590
    • S. Y. Sheu and D. Y. Yang, J. Chem. Phys. 112 (1), 408-415 (2000). 10.1063/1.480590
    • (2000) J. Chem. Phys. , vol.112 , Issue.1 , pp. 408-415
    • Sheu, S.Y.1    Yang, D.Y.2
  • 38
    • 17444363446 scopus 로고    scopus 로고
    • 10.1063/1.1860552
    • S. Y. Sheu, J. Chem. Phys. 122 (10), 104905 (2005). 10.1063/1.1860552
    • (2005) J. Chem. Phys. , vol.122 , Issue.10 , pp. 104905
    • Sheu, S.Y.1
  • 40
    • 65949104571 scopus 로고    scopus 로고
    • 10.1063/1.3130149
    • D. M. Leitner, J. Chem. Phys. 130 (19), 195101 (2009). 10.1063/1.3130149
    • (2009) J. Chem. Phys. , vol.130 , Issue.19 , pp. 195101
    • Leitner, D.M.1
  • 43
    • 0021796467 scopus 로고
    • 10.1126/science.4012322
    • H. Frauenfelder and P. G. Wolynes, Science 229 (4711), 337-345 (1985). 10.1126/science.4012322
    • (1985) Science , vol.229 , Issue.4711 , pp. 337-345
    • Frauenfelder, H.1    Wolynes, P.G.2
  • 51
    • 0023644307 scopus 로고
    • 10.1016/0022-2836(87)90634-6
    • C. E. Kundrot and F. M. Richards, J. Mol. Biol. 193 (1), 157-170 (1987). 10.1016/0022-2836(87)90634-6
    • (1987) J. Mol. Biol. , vol.193 , Issue.1 , pp. 157-170
    • Kundrot, C.E.1    Richards, F.M.2
  • 52
    • 25444467791 scopus 로고    scopus 로고
    • 10.1021/jp051938n
    • P. Banushkina and M. Meuwly, J. Phys. Chem. B 109 (35), 16911-16917 (2005). 10.1021/jp051938n
    • (2005) J. Phys. Chem. B , vol.109 , Issue.35 , pp. 16911-16917
    • Banushkina, P.1    Meuwly, M.2
  • 53
    • 9644265397 scopus 로고    scopus 로고
    • 10.1002/cphc.200400220
    • D. R. Nutt and M. Meuwly, ChemPhysChem 5 (11), 1710-1718 (2004). 10.1002/cphc.200400220
    • (2004) ChemPhysChem , vol.5 , Issue.11 , pp. 1710-1718
    • Nutt, D.R.1    Meuwly, M.2
  • 55
    • 0030601771 scopus 로고    scopus 로고
    • 10.1006/jmbi.1996.0562
    • M. Karplus and T. Ichiye, J. Mol. Biol. 263 (2), 120-122 (1996). 10.1006/jmbi.1996.0562
    • (1996) J. Mol. Biol. , vol.263 , Issue.2 , pp. 120-122
    • Karplus, M.1    Ichiye, T.2
  • 56
    • 0017405375 scopus 로고
    • 10.1016/0022-2836(77)90238-8
    • R. Sarma and R. Bott, J. Mol. Biol. 113 (3), 555-565 (1977). 10.1016/0022-2836(77)90238-8
    • (1977) J. Mol. Biol. , vol.113 , Issue.3 , pp. 555-565
    • Sarma, R.1    Bott, R.2
  • 57
    • 84856013906 scopus 로고    scopus 로고
    • 10.1016/j.bpj.2011.10.058
    • N. Plattner and M. Meuwly, Biophys. J. 102 (2), 333-341 (2012). 10.1016/j.bpj.2011.10.058
    • (2012) Biophys. J. , vol.102 , Issue.2 , pp. 333-341
    • Plattner, N.1    Meuwly, M.2
  • 58
    • 34948841031 scopus 로고    scopus 로고
    • 10.1063/1.2775444
    • P. Banushkina and M. Meuwly, J. Chem. Phys. 127 (13) 135101 (2007). 10.1063/1.2775444
    • (2007) J. Chem. Phys. , vol.127 , Issue.13 , pp. 135101
    • Banushkina, P.1    Meuwly, M.2
  • 60
    • 0002690528 scopus 로고
    • 10.1016/0301-0104(91)87068-7
    • J. E. Straub and M. Karplus, Chem. Phys. 158 (2-3), 221-248 (1991). 10.1016/0301-0104(91)87068-7
    • (1991) Chem. Phys. , vol.158 , Issue.23 , pp. 221-248
    • Straub, J.E.1    Karplus, M.2
  • 61
    • 0344551116 scopus 로고    scopus 로고
    • 10.1016/S0006-3495(03)74779-1
    • D. R. Nutt and M. Meuwly, Biophys. J. 85 (6), 3612-3623 (2003). 10.1016/S0006-3495(03)74779-1
    • (2003) Biophys. J. , vol.85 , Issue.6 , pp. 3612-3623
    • Nutt, D.R.1    Meuwly, M.2
  • 62
    • 41649119610 scopus 로고    scopus 로고
    • 10.1529/biophysj.107.120519
    • N. Plattner and M. Meuwly, Biophys. J. 94 (7), 2505-2515 (2008). 10.1529/biophysj.107.120519
    • (2008) Biophys. J. , vol.94 , Issue.7 , pp. 2505-2515
    • Plattner, N.1    Meuwly, M.2
  • 63
    • 0029633155 scopus 로고
    • 10.1016/0010-4655(95)00053-I
    • B. Roux, Comput. Phys. Commun. 91 (1-3), 275-282 (1995). 10.1016/0010-4655(95)00053-I
    • (1995) Comput. Phys. Commun. , vol.91 , Issue.13 , pp. 275-282
    • Roux, B.1
  • 67
    • 0000388705 scopus 로고    scopus 로고
    • 10.1002/(SICI)1096-987X(199709)18:121463::AID-JCC43.0.CO;2-H
    • B. Hess, H. Bekker, H. J. C. Berendsen, and J. G. E. M. Fraaije, J. Comput. Chem. 18 (12), 1463-1472 (1997). 10.1002/(SICI)1096-987X(199709)18: 121463::AID-JCC43.0.CO;2-H
    • (1997) J. Comput. Chem. , vol.18 , Issue.12 , pp. 1463-1472
    • Hess, B.1    Bekker, H.2    Berendsen, H.J.C.3    Fraaije, J.G.E.M.4
  • 75
    • 84943502952 scopus 로고
    • 10.1080/00268978400101201
    • S. Nose, Mol. Phys. 52 (2), 255-268 (1984). 10.1080/00268978400101201
    • (1984) Mol. Phys. , vol.52 , Issue.2 , pp. 255-268
    • Nose, S.1
  • 76
    • 0001538909 scopus 로고
    • 10.1103/PhysRevA.31.1695
    • W. G. Hoover, Phys. Rev. A 31 (3), 1695-1697 (1985). 10.1103/PhysRevA.31. 1695
    • (1985) Phys. Rev. A , vol.31 , Issue.3 , pp. 1695-1697
    • Hoover, W.G.1
  • 77
    • 0019707626 scopus 로고
    • 10.1063/1.328693
    • M. Parrinello and A. Rahman, J. Appl. Phys. 52 (12), 7182-7190 (1981). 10.1063/1.328693
    • (1981) J. Appl. Phys. , vol.52 , Issue.12 , pp. 7182-7190
    • Parrinello, M.1    Rahman, A.2
  • 78
    • 84926811618 scopus 로고
    • 10.1080/00268978300102851
    • S. Nose and M. L. Klein, Mol. Phys. 50 (5), 1055-1076 (1983). 10.1080/00268978300102851
    • (1983) Mol. Phys. , vol.50 , Issue.5 , pp. 1055-1076
    • Nose, S.1    Klein, M.L.2
  • 79
    • 0025109873 scopus 로고
    • 10.1016/S0022-2836(05)80063-4
    • Y. Seno and N. Go, J. Mol. Biol. 216 (1), 95-109 (1990). 10.1016/S0022-2836(05)80063-4
    • (1990) J. Mol. Biol. , vol.216 , Issue.1 , pp. 95-109
    • Seno, Y.1    Go, N.2
  • 80
    • 0025163070 scopus 로고
    • 10.1016/S0022-2836(05)80064-6
    • Y. Seno and N. Go, J. Mol. Biol. 216 (1), 111-126 (1990). 10.1016/S0022-2836(05)80064-6
    • (1990) J. Mol. Biol. , vol.216 , Issue.1 , pp. 111-126
    • Seno, Y.1    Go, N.2
  • 81
    • 0027179514 scopus 로고
    • 10.1002/prot.340160403
    • T. Yamato, J. Higo, Y. Seno, and N. Go, Proteins 16 (4), 327-340 (1993). 10.1002/prot.340160403
    • (1993) Proteins , vol.16 , Issue.4 , pp. 327-340
    • Yamato, T.1    Higo, J.2    Seno, Y.3    Go, N.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.